RNA id: TU330486



Basic Information


Item Value
RNA id TU330486
length 259
RNA type TUCP
GC content 0.54
exon number 2
gene id LOC110504602
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 69915810 ~ 69923807 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cgcagctcagaGTACAAGGCCATTGTCAAACCCATGGACATCCATACGTCCACAGCTAAGATCTGCTTCCGAGCAGCAGCCATATGGCTCTTCTCCATGACCCTAGCTGTTCCTGAGGTGGTCTTCTCCGACCTTCACACCTTCAACATCGGCCAGACCAACGACACCTTTGTGACATGCGCTCCCTACCCCCATGCTGGGGATCTGCACCCTAAGATCCACTCTATGGCCTTCTTTCTCATCTTCTACATCATCCCCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU330456 lncRNA upstream 24251 69893855 ~ 69894931 (+) True G291444
TU330451 lncRNA upstream 30965 69887811 ~ 69888217 (+) True G291440
TU330389 lncRNA upstream 47846 69870856 ~ 69871336 (+) True G291378
TU330425 lncRNA upstream 81257 69837711 ~ 69837925 (+) True G291414
TU330422 lncRNA upstream 86127 69832750 ~ 69833055 (+) True G291411
TU330509 lncRNA downstream 49579 69971698 ~ 69971933 (+) True G291490
TU330521 lncRNA downstream 109882 70032001 ~ 70034765 (+) False LOC110520491
TU330526 lncRNA downstream 109882 70032001 ~ 70034765 (+) False LOC110520491
TU330529 lncRNA downstream 109882 70032001 ~ 70034765 (+) False LOC110520491
TU330516 lncRNA downstream 109932 70032051 ~ 70034765 (+) False LOC110520491
XM_021597835.2 mRNA upstream 48970 69861894 ~ 69870212 (+) False LOC110520485
XM_021597836.2 mRNA upstream 48970 69862022 ~ 69870212 (+) False LOC110520485
XM_021597834.2 mRNA upstream 48970 69862032 ~ 69870212 (+) False LOC110520485
XM_036975038.1 mRNA upstream 48970 69862035 ~ 69870212 (+) False LOC110520485
XM_036975039.1 mRNA upstream 51305 69862028 ~ 69867877 (+) False LOC110520485
XM_036975046.1 mRNA downstream 58149 69980268 ~ 70034757 (+) False LOC110520491
XM_036975047.1 mRNA downstream 58152 69980271 ~ 70034757 (+) False LOC110520491
XR_002472992.2 mRNA downstream 135264 70057383 ~ 70070331 (+) False LOC110520493
XM_021597860.2 mRNA downstream 135283 70057402 ~ 70070470 (+) False LOC110520493
XM_021597859.2 mRNA downstream 135291 70057410 ~ 70070470 (+) False LOC110520493
TU330385 other upstream 48970 69862060 ~ 69870212 (+) True LOC110520485
TU330321 other upstream 223346 69695395 ~ 69695836 (+) True G291327
TU330151 other upstream 288813 69626343 ~ 69630369 (+) True LOC110520478
TU328723 other upstream 1693876 68223725 ~ 68225306 (+) False G289883
TU328273 other upstream 2156759 67761737 ~ 67762423 (+) True G289517
TU330474 other downstream 27548 69949667 ~ 69952168 (+) True G291461
TU330553 other downstream 135421 70057540 ~ 70070357 (+) True LOC110520493
TU331609 other downstream 654999 70577118 ~ 70581089 (+) False LOC110520507
TU331610 other downstream 654999 70577118 ~ 70581089 (+) False LOC110520507
TU331619 other downstream 654999 70577118 ~ 70581089 (+) False LOC110520507

Expression Profile