RNA id: XM_021597850.2


Basic Information

Item Value
RNA id XM_021597850.2
length 3602
RNA type mRNA
GC content 0.39
exon number 6
gene id LOC110520490
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 69949665 ~ 69971173 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTTCGATCATTCAGTGAGCGCACACTGGACACtagccgaggagtagggttgatcggAGCGTTCTGatctcacaacggcagtcaaatACACAAGTTTATTGCCCAATTTCTGGAACCGTGacgtcaaaataaaaaaaatcgacAGTTGACACTGCTGACTTTCACTCTTTCCAAGTTTGCCGTCCAACCCGGATTCACGACAAAACGTTGATCTCCTGCTTACATTGATTATAATTTCTGCAGAAAATGGAAACCTATAGAACACACATTGTCATGTGGACTGTCCTGTGGTTAGTAGAAGTCTTCCTGTGTGCCTCAGCCCATTTGGAGCCGCTCCAAGCTATTGTGGGACAAAACGTCCTCCTGCAATGCCCCTGCAAGAAGAGAAACGAGAGAATGGACATGAAATGGCAGTTAGAAGACCataccaccgtgcttcaccacaGTGGAAGTCATAACACCACAAACATCGGGGAGGGATATCAAAACAGGGTCAATCTCTTTCAGAATGAAGATAAGGACAACTGTTCCCTGCTCCTCTCAGGCATCACTGTCGCAGACAATGGGATGTACAAATGCTTCTTTCAAACCGAGACTTTGGTCTACATTCACATCACTCTGCATGTGATTGccaGCTACAGTGTCTGTATGTACCAGGTACTAGACCAGGCTCCGATGGGTTCCGGATGGGAAGAGAGGTTCGGGGTGTACCAGTGTAAAGCCAACGGGGGATACCCAAAGGGCCAGATTCACTGGAAGATGGGTGGACATCCTCTGGTGAACACCTCCAGGAGGGATGAGACCCACCTGGATAACTCTACAGGACTATACAGTCTGACCAGCATCCTGACCATGGATCGGAGTCAGGGTGAAAAACTGCAGTGTATGGTGGAGAACACAGACCAGGCATCTAAACTCAACTCCACCTGCAAGGAAAAGCCTGTATACATTAGAGAGAGTCCATTGGGGAGTCCTGAtaaagtagcagtagcagcaggtgTGTCTGTCAGCGTGGTTGTGATGCTTGTTGCGGGAGTCCTGCTGGTGATCTTCTTACTGACTAGATGTCACCGCCGTGAAACGTCAACGCAGAGCGACACAGAGGATAGAAGCGTGACCCAGCAGTTGAACATGTATGAACACTGAGTGTGTGGAGCATCTTCTCCCTCTGATACAACAATCTCTCCTCAAATGACGGACGACAAAATGGAGGGATGGTGACTTGCAACAAGACAAACTTAAACTTAAAATAATGCCTGTGTTCAAAGTAGCATTGTGGAGCAGCATTGAGCAATGTATTGTAATGTCATGTCTGAACCATATTCTGTGGCAGGAAGTGAAAGAAGTGGAGAACAGCATGATGGGAGAAATGACTGGTCAATGGACTGAACATGAGCCGAACTCAGTAAATGAAATCCCAATAAATAAAGTAGACCTAAGGCAGCCTGTATATTATAGAGTTGACTAACTACAGGTGCATTCACATTTCTAAGAAGAGAAGCAGATGATACAGGACTACTATAGTTAACAGCCATCATGGAAACTCTTGTTACATACATCTACCGCATGTTCCTGGTGTTACCCATTTGAATCATGTTGATAATTCAGGTTGATAATTCATGTTGATAATTCGCTTTCATGTACAGCAGTCATTTCACCATTTAAATATGAATTTAATTATCTGAATAATGTGAAGAATTTGACATGATCAATGTTTTCATTGCtgcttattattattatgtagctTGCTGTGAAACAAGCATGTCATGGAATGACTAAATCAAAAGATTAGTAACACTTTGGTCCAGGGTCCGTTTTGTTGTATTATTAACCATATTGGTTAAGCTTACAACACAGGAAGAGCTGATCGGAAATCAGGGAAATAAAATGACTTTTTATAGGTCTTGTCCCGAGGGACTAATACAAGTTTCACATCTGTGTTCATATTTATTTTGTGAGAGAAAAAAACTACAGACATTATACAAATACATTATCCGCCCACCTCTCCCCTTTCCACCCACATGACCTGCTTATTTGAGTACAAATATCAAAGTAGTGATTTTAAACTGTTAATTGTTGGAGTCCATATGTTGATACTTGGTTGCCTGGGTGTTAGGTGCAGTGAAGTTAGTCATCATTAAGCAGTAAGAGATTGGCAAGACAAGGGATTGGTTTAGATAAAATGCTTGATAATGATGAAGACAGATTGCCAAAAGGAGAACAATCTGTTTTAGTACTTTTATACCACTCATATTTTATGCTGTAAGTGACAATACTGGCTGTTTTTCTGTGTGGGAAAGTATTGTTCAGTTGTTTTTATGTGTTTGTACTGTTGGAAAGTAGCTGAaattctctgtcctcttccttcTTGGTGTTTCTTTTTCAAATAAACTATGTACTGTGAATATGAAATGAGATAAACCCTATATTAAATGCCATAATAAACCCTATATTAAATGCCATAATAAACCCTATATTAAACGCCATAATAAACCCTATATTAAATGCCATAATAAACGCTATATTAAATGCCATAATAAACGCTATATTAAATGCCATAATAAACCCTATATTAAATGCCATAATAAACGCTATATTAAATGCCATAATAAACGCTATATTAAATGCCATAATAAACCCTATATTAAATGCCATAATAAACGCTATATTAAATGCCATAATAAACCCTATAATAAATGCCATAATAAACGCTATATTAAATGCCATAATAAACGCTATATTAAATGCCATAATAAACCCTATATTAAATGCCATAATAAACGCTATATTAAATGCCATAATAAACGCTATATTAAATGCCATAATAAACGCTATATTAAATGGCATAATAAACCCTATATTAAATGCCATAATAAACGCTATATTAAATACCATAATAAACCCTATATTAAATGCCATAATAAACCCTATATTAAATGCCATAATAAACCCTATATTAAAGCACAGCATTGATTGTCACTGCTACGCAGATGATACACAGCCTCACATTTCTGCGTCACCAGAGAATTCTAGCTCCACGGATACATTATTAGACTGTTTTAGTGAGTTAAAtaacttcctccagctaaatcgAGACAAAAACCTAGgtacttattgttggagccaaagcacagcGAGAGAATCTAGCAGCATATTTTAATTCACaggcaataaagataaaacaaaAGGTAAAAAAAACCTAAGTGTTATTTTTATATTCTGAAGTCAATTTCgaatcacacattaggaatgCGACCAAAATTGCTTTTTACCAGGAACATTTTGAGGTGTGGatgtttctctctcaggctgatacagagagactcgtccatgcttttattacattCAGGTTTGACTACTGTattgctctcctgtctggtctacccaagaaagccattggtcaactgcagaacatacagaatgctgcagcatggGTACTGACCAAGATCAGACGGAGAGCACACATTTCATAGGTTTTAAGGTCTCTgtactggctgcctgtgagttctGTAATGCACATTGCATTGCAgtccatgtctgaaatgttctGTATAAAAAAGCTTGATTTGATTAAATGTCAAAATAAACGCAATATTAAATGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU330957 lncRNA downstream 14423 69933859 ~ 69935242 (-) True piga
TU330930 lncRNA downstream 54622 69893326 ~ 69895043 (-) False LOC110520487
TU330927 lncRNA downstream 54622 69893367 ~ 69895043 (-) False LOC110520487
TU330924 lncRNA downstream 54622 69893580 ~ 69895043 (-) False LOC110520487
TU330926 lncRNA downstream 54622 69893580 ~ 69895043 (-) True LOC110520487
TU330993 lncRNA upstream 490 69971661 ~ 69971925 (-) True G291896
TU330976 lncRNA upstream 59593 70030764 ~ 70034763 (-) False G291884
TU330977 lncRNA upstream 59593 70030764 ~ 70034763 (-) False G291884
TU330978 lncRNA upstream 59593 70030764 ~ 70034763 (-) False G291884
TU330979 lncRNA upstream 59593 70030764 ~ 70034763 (-) True G291884
XM_021597845.2 mRNA downstream 10809 69933697 ~ 69938856 (-) False piga
XM_036975045.1 mRNA downstream 10809 69933697 ~ 69938856 (-) False piga
XM_036975044.1 mRNA downstream 10811 69933697 ~ 69938854 (-) False piga
XM_021597848.2 mRNA downstream 16305 69927661 ~ 69933360 (-) True asb11
XM_021583357.2 mRNA downstream 38504 69907305 ~ 69911161 (-) True LOC110504590
XM_021597856.2 mRNA upstream 63869 70035040 ~ 70048383 (-) False LOC110520492
XM_021597858.2 mRNA upstream 63869 70035040 ~ 70048383 (-) False LOC110520492
XM_021597857.2 mRNA upstream 63869 70035040 ~ 70048393 (-) True LOC110520492
XM_036975048.1 mRNA upstream 154127 70125298 ~ 70135532 (-) True LOC110520496
LOC118964359 mRNA upstream 249159 70220330 ~ 70220464 (-) True LOC118964359
TU330123 other downstream 693121 69256005 ~ 69256544 (-) True G291138
TU329646 other downstream 1098811 68846611 ~ 68850854 (-) True G290713
TU329520 other downstream 1224751 68721808 ~ 68724914 (-) True G290602
TU329515 other downstream 1232280 68710367 ~ 68717385 (-) True G290598
TU329467 other downstream 1302045 68626332 ~ 68647620 (-) True G290567
TU330998 other upstream 9175 69980346 ~ 69996605 (-) True G291901
TU331092 other upstream 136369 70107540 ~ 70107950 (-) True G291977
TU332000 other upstream 748865 70720036 ~ 70720591 (-) True G292753
TU332200 other upstream 1056448 71027619 ~ 71040152 (-) True G292919
TU333405 other upstream 1932143 71903314 ~ 71903908 (-) True G293984

Expression Profile