RNA id: XM_036975047.1


Basic Information

Item Value
RNA id XM_036975047.1
length 5602
RNA type mRNA
GC content 0.50
exon number 17
gene id LOC110520491
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 69980268 ~ 70034765 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCCTCAAGTTTCTTCCCATAGGCTAGCCTATTCTCTCGGGCCGCAATCACACACTATTGGCCGGGTCAGGTGACAGGCTTTGGGGAAGCTGGCCAGCCTCGTTCTCGCTTTCCATCATTTAACACGCCATCGCCAACCGGGAGTGCACGGGAACAGGATAGAGCATCGGATTTATCGGAATATTTTCCAGATATTGGACAAAACTGATTTAGGGTCAACGGCATGGGCGAGCGAACGGCATTTCTGCTGTTATGGGTTGCGACCTTGACGCTGGCATCTGAGGTGCCTTCTGATGACTCAGTGGGTCTGCTGGCAGAGCCCCAGGTAGCCATGTTCTGTGGGAAATTCAACATGCATGTCAACGTTCAGAGTGGCAAGTGGGAGTCGGATCCCTTCGGCACCAAGAGCTGCATCGGAACCAAGGAGGGCATCCTGCAGTACTGTCaggagGTGTACCCTGAGCTCCAGATCACTAACGTGGTGGaggccaaccagccagtcagcattCAGAGCTGGTGCAAGAAGGGACGCAAGAAGGGACGCAAGGAGTgtagcagtcacacacacatcgTGGTGCCCTACCGCTGCCTGGTTGGAGAGTTTGTGAGTGATGCCCTGCTGGTTCCTGATAAGTGCAAGTTCCTGCATCAGGAGAGAATGGACATGTGTGAGAGCCACCTGCACTGGCACACCGTGGCTAAAGAGTCCTGCGGAGACCGCACCATGAATCTCCATGACTACGGGATGCTGTTGCCATGCGGCATCGACCGTTTCCGAGGGGTGGAGTTTGTGTGTTGCCCAGCGGAGACACAGCGCGAGTCAGACAGTGTGGAGCTGACTGAGTCTGATGTGTGGTGGGGTGGAGATGAGACTGAATATACCGATAACAGCATGCCTCGCCAGGCGGATCAGGGGGCTGTCACCACTGAGGAGGATGACGAAGAGGATGCCTTTGACAGAGACGAGGACGGAGATGGTcttgaggatgatgatgatgaagacgaTGAGGATGACGTGACCGATGAACGGGACAGTGGTGAAGGCACCTCCAACATCGCCATGACAACCACCACCACGACCACCACTGAGTCGGTTGAGGAAGTCGTCAGAGtGCCCACCACGGCCCCCTCCCCCCCTGGCGCGGTGGACCGTTACCTGGAGTCTCCCGGAGACGACAGCGAACACGCCAACTTCCAGCAGGCCAAGGAGAGTCTGGAGGCCAAGCACCGCGAGAGGATGTCTCAGGTGatgagagagtgggaggaagcAGAGAGACAAGCCAAGAGTCTCCCTCGCGCTGACAAGAAGGCAGTCATCCAGCACTTCCAGGAGAAGGTGGAGGCCCTGGAGCAGGAGGCAGCAGGAGAGAGGCAGCAGCTGGTGGAGACCCACATGGCCCGGGTGGAGGCCCTGCTCAACAGCCGCCGCCACATGGCCCTGGAGAACTACCTCGGCTCTCTGCAGGCCAACCCACCCAGGcctCGTCAGGTGCTTGGCCTGTTGAAGAAGTATGTCCGTGCAGAACAGAAGGACAGACAACACACCCTGAAACACTACGAACACGTCCGCATGGTGGACCCCAAAAAGGCTGCTCAGATCCGACCCCAGGTGATGACCCACCTGCGTGTGATTGACGAGAGGATGAACCAATCCCTGGGGCTGCTCTACAAGGTGCCCAGCGTGGCCAAGGAAATCCAAGACCAAGTTTctgtCCTGATGCGGAGGGTTCAGTCAGAGCTGTCTCAGCAAGTCTCATCTCTGCAGAGCGATGGGAGGAGCGATGGCAGGGTGAGCTATGGAAACGATGCCCTGATGCCCGACCAGGCTTACAGCTCTGCCCCTCTGGACCCTGGCATGGGCCTGGATCGACTGGGCTTCATCCACCCAGAGAGCTTCAATCAGCCCAACACTGACAAcaacgTTGATCCTGTTGATGCTCGTCCAGTCCCAGATAGAGGTCTGCCCACTCGGCCTGTGTCTGCTCTGAAGCCTGAGGAGTTTCCTGAGGTGCgggtggagaaggaggagcgACAAAGCGCCAGCTATGAAGTGCATCATCAAAAACTGGTGTTCTTTGCTGAGGATGTAGGCTCCAACAAGGGTGCCATCATCGGCCTGATGGTGGGCGGGGTTGTCATAGCGACAGTCATCATCATCTCTCTGATTATGCTGAGGAAGAAGCAGTATACCTCCATCCACCACGGAATCATCGAGgtggatgctgcagtgacCCCAGAGGAGCGTCACCTGTCCAAGATGCAGCAGAATGGCTATGAGAACCCCACCTACAAGTTCTTCGAACAGATGCAGAACTAAGGAGCTACCCTTTGACCCCTCCCAGACCCTGAACTTCCTTTAACCCCTCACACCTAGGGCCCGTTCCATTTTGGTCCATAAACCCCTCACACCTAGGGCCCGTTCCATTTTGGTCCATAAACCCCTCGCACCTAGGGCCCGTTCCATTTTGGTCCATAAACCCCTCGCACTTAGGGCCCGTTCCATTTCGGTCCATAAACCCCTCGCACCTAGGGCCCGTTCCATTTTGGTCCATAAACCCCTCGCACCTAGGGCCCGTTCCATTTTGGTCCATAAACCCCTCACACCTAGGGCCCGTTCCATTTTAGTCCATAAACCCCTCGCACCTAGGGCCCGTTCCATTTTGGTCCATAAACCCCTCACACCTAGGGCCCGTTCCATTTTAGTCCATAAACCCCTCGCACCTAGGGCCCGTTCCATTTTGGTCCATAAACCCCTCGCACTTAGGGCCCGTTCCATTTCGGTACATAAACCCCTCGCACCTAGGGCCCGTTCCATTTTGGTCCATAAACCCCTCGCACCTAGGGCCGTTCCATTTTAGTCCATAAACCCCTCGCACCTAGGGCCCGTTCCATTTTGGTCCATAAACCCCTCGCACCTAGGGCCCGTTCCATTTTGGTCCATAAACCCCTCACACCTAGGGCCCGTTCCATTTTGGTCCATAAACCCCTCACACCTAGGGCCCGTTCCATTTTGGTCCATAAACCCCTCACACCTAGGGCCCGTTCCATTTTGGTCCATAAACCCCTCACACCTAGGGCCCGTTCCATTTTGTTCCATAAACCCTTCTAACTCCTACTCTATTGCTGTCAATGGATCTGAAAGGACTGAGTAGGTGAAACCAGTATGACTGAAGTGCCAGAAAAATCTAGAATGAATTGGGTTTGAAATAGTTATATTACTTCCAGCTATCCAGGGGTAGTGCCAAAGAGCTGGGGGCTGAAATACAACCTAGCCACACTTCATCCTTTCCTCGTAAAGTGCAGCACATCAACATTCATAGCTACTATTGGTCAGACAAGGATATCCTCATTCACCTGCATATTTTTCTATAATATCCTGTAGTGTTTGTACAGAACAGAGAAGCTCATTGATTGATTCATCTGTCCGTCTATCTGGGGGTGAGTCCTCCCCCTCAGGATAGCACTCGCAGGTCTAAGAGGGTGAAACAGAGGCCCCAAATATCCCTGCAATCTTCCTGCCTCTTCCTCACTCACTCTGACgcactctcccctccccctccatctctcccacgcactcttctcccctccctctctctcagatgaCAGCTGTGCTGTGTTTAGTGATGACATAACAGCTCTTAACACTAGCGAAGGGAGGAGGGGCTCAGTCTGCCCTGAGCTCCTCTCTGTGGGATTATACCACAAGGGAGGAGGGGCTCAGTCTGCCCTGAGCTCCTCTCTGTGGGATTATACCACAAGGGAGGAGGGGCTCAGTCTGCCCTGAGCTCCTCTCTGTGGGATTATACCACAAGGGACGAGGTTGCTCAGTCTGCCCTGAGCTCCTCTCTGTGGGATTATACCACAAGGGAGGAGGGGCTCAGTCTGCCCTGAGCTCCTCTCTGTGGGATTATACCACAAGGGAGGAGGGGCTCAGTCTGCCCTGAGCTCCTCTCTGTGGGATTATACCACAAGGGAGGAGGGGCTCAGTCTGCCCTGAGCTCCTCTCTGTGGGATTATACCACAAGCGTTTCAGGTTTTTTTTCcagaaaaatgtataaaaaaacaaaaatatataactaATACATGAGAAATATGTAAAAGGCAAAGAAATattgaatgtttttattttgtgcGTAATGTATTGAAATAAGGCAGAAAAAAACTAGCTGTAACTATATGTAGTGCATGGTGATATTGATGCCAGATATACGTAGAGAAGCTGGCTCCTGTCGCAGTACTGGGCCTCTCATATAGACTTTTAGCAGGATTGTACATTTTCTGTGTCTTCTTTGTGATCTTGTGATAtgaagaagagagaaaaaaaaaagtatttagaatCTGGTCCGCTTTGTCACTGCGACAATCTTTAAACAGAACCTGTGCTCTCCTTTGTTTCCAGCCCCTTCCTCGCTCTGTGTTACCTACATGGACCCAATTATCTCTATCTACATGTAGCTAATATAATGACGTGTAATAGTATCTGAAAGGAAGTCGATCTGTTTCATTTAGTCTGGGTGTTACTGGTGTTACTGCTCTGTTTGTTGGTTTATGTCCCTTAAATATTCCACGACTAGGAATTGTTTCAGCTCCATTCATCATTCCAGAAATCTCAGCATTCCACCCGATCTTTCCTCATTCCTATATAGTCTGTGAACATCATTAATGGAAACAGAAatcattattatgttttctttCTCAGGCTTTCAGGCTCTTTTTcgatctctcctttcctctgtctaTCCCATAGACCTCAACCCCCACAACCAGCCCTGCTTCTCTATCCATGCTGTCGGCTTGGTGTGTGAACTatgttgaattgagagagagaggggggggattgGGTGTGTCAGATTTGTACATTCTAATCTATTGTCTTTCTGATCATCAAACACTTATTCCCTCCACAATGTCTCACACAGAACATACACtatttttccatgacatagactgaccaggtgaaagctatgatcccttattgatgtacaTGTATCAAACAACCAAGGAAAGATAAGAAAAACTGTTCCTTGTTCTGTGGTGGGAATCCCcctcttgcttgttttgtcaaatCTCTCATGTCTCAGACATCCTGGCTTTAAAAGCAGAGGCTAAAGAAATACTGATCTCGGGACAATGTGCGTGAGGCAAAATACAGGGACACTGTTCAGAAAGGAGCAACTGCACAGGACTTTCAGATATAAATGTGTTATGTGGAACAGATGTCATTATGTCAGGTAGTTTTGTGTTACATTCTGAATGTTTCACCGAGCTGAACGCACCCCAGATCTGGGATCAGTATTGCGGCCGTAGTAGACGAGACATTCCCCATACCCAAAATGGAGCCTCCAATAGACATGAATGTGACATTCATATTGTGCAATTATGCCACAGATCTACATACTACTACACTCCCTCCCTACACACAAACTGAAGCTCTTAAATCAGGTAAATGTTTTGGTGTTATCAAGGATACTTGTACAGGGTATCTCCAGGGGTTAGTGGTTTCATTTGTTCATTCTGTGACTTTTTCTGTGTACCTATACAAATAATTTGCTTAGACTGAGAATGCTTTCTACACTATCCCATCAATAAAATGTTGAATGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU330509 lncRNA upstream 8338 69971698 ~ 69971933 (+) True G291490
TU330387 lncRNA upstream 34139 69871693 ~ 69946132 (+) True G291376
TU330456 lncRNA upstream 85340 69893855 ~ 69894931 (+) True G291444
TU330451 lncRNA upstream 92054 69887811 ~ 69888217 (+) True G291440
TU330389 lncRNA upstream 108935 69870856 ~ 69871336 (+) True G291378
TU331075 lncRNA downstream 62036 70096793 ~ 70096999 (+) True G291960
TU331076 lncRNA downstream 62615 70097372 ~ 70097582 (+) True G291961
TU331086 lncRNA downstream 69417 70104174 ~ 70104373 (+) True G291971
TU331111 lncRNA downstream 86589 70121346 ~ 70122502 (+) True G291995
TU331123 lncRNA downstream 107425 70142182 ~ 70142708 (+) True G292005
XM_021583366.2 mRNA upstream 56464 69915810 ~ 69923807 (+) False LOC110504602
XM_021597834.2 mRNA upstream 110059 69862032 ~ 69870212 (+) False LOC110520485
XM_036975038.1 mRNA upstream 110059 69862035 ~ 69870212 (+) False LOC110520485
XM_036975039.1 mRNA upstream 112394 69862028 ~ 69867877 (+) False LOC110520485
XR_002472992.2 mRNA downstream 22626 70057383 ~ 70070331 (+) False LOC110520493
XM_021597860.2 mRNA downstream 22645 70057402 ~ 70070470 (+) False LOC110520493
XM_021597859.2 mRNA downstream 22653 70057410 ~ 70070470 (+) False LOC110520493
XM_021597862.2 mRNA downstream 25658 70060415 ~ 70070470 (+) False LOC110520493
XM_021597866.2 mRNA downstream 38047 70072804 ~ 70092807 (+) True LOC110520495
TU330474 other upstream 28103 69949667 ~ 69952168 (+) True G291461
TU330486 other upstream 58152 69919182 ~ 69922119 (+) True LOC110504602
TU330385 other upstream 110059 69862060 ~ 69870212 (+) True LOC110520485
TU330321 other upstream 284435 69695395 ~ 69695836 (+) True G291327
TU330151 other upstream 349902 69626343 ~ 69630369 (+) True LOC110520478
TU330553 other downstream 22783 70057540 ~ 70070357 (+) True LOC110520493
TU331609 other downstream 542361 70577118 ~ 70581089 (+) False LOC110520507
TU331610 other downstream 542361 70577118 ~ 70581089 (+) False LOC110520507
TU331619 other downstream 542361 70577118 ~ 70581089 (+) False LOC110520507
TU332513 other downstream 1331426 71366183 ~ 71366423 (+) True G293204

Expression Profile