RNA id: XM_036975048.1


Basic Information

Item Value
RNA id XM_036975048.1
length 3827
RNA type mRNA
GC content 0.52
exon number 11
gene id LOC110520496
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 70125298 ~ 70135532 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTGGCTGTCTGCATTCCACAGGAGCGCACAGGCAGACCGAACAGTGCGGTAGCCGGGGTTGTGACCGGCCAAATTAACCTGTAAATAGTTCTAACTGATACGGCTGGCACACTTTAGTGTACACTTCAGTGTACATTTATGTAGATATTTCTTTAAAAGAAGGAAAATAAAAAAAGTGAAATGCTGTTTTTCATTATACTTTTCTCATATTTACTGCAACTAATATCCTTATAGAATGACTTGTATAGCTGTCTGTAACAACCGATTAAACTGTGAGAGGAGCTGGTGCACCTACATCCAATAAGGTACTACACACAATTTTTATCCTATCCTTTGGAATATAATAATCATCATGGTGATCATGACGGAGAGCAGCCAGGGGGCCCAGCCCAACCATACCCAGGGAAGGCCTCTCCAGGTCGGCTTCTATGAGATCATAAGCACGCTGGGGAAAGGAAACTTTGCCGTGGTCAAACTGGCAAGGCACAAAGTCACCAAAACACAGGTGGCCATAAAGATCATTGACAAGACGAGACTAAACCCATCCAACCTAGAGAAGATCTACAGGGAGGTCCAGATAATGAAGCTGCTTAACCACCCCCATATCATCAAACTCTACCAGGTAATGGAGACTAAAGATATGCTGTACATTGTGACAGAATACGCCAAAAATGGAGAGATGTTCGACTACTTGACCTCAAACGGGCGCATGAGCGAGGACGAGGCGCAGAAGAAGTTCGGGCAGATTCTGACGGCAGTGGATTACTGCCACAGGCACCACATCGTTCACAGAGACCTCAAAACTGAGAATCTACTGCTGGATGCCAACATGAACATCAAACTGGCCGACTTTGGATTCGGTAACTTCTACAACGCAGGCGAGCCCCTGTCTACGTGGTGCGGCAGCCCCCCTTACGCAGCACCCGAGGTGTTCGAGGGGAAGGAGTACGAAGGGCCACAGTTGGATATCTGGAGTCTGGGTGTGGTTCTGTACGTTCTCGTGTGCGGTTCCCTTCCGTTCGACGGGCCCAGCCTCCCTGCTCTCAGACAGAGAGTCACAGAGGGGCGCTTCAGAATCCCCTTCTTCATGTCTCAAGACTGTGAGAACCTGATCCGTAGGATGCTGGTGGTAGACCCAGCTAAGAGGATCAGTGTGGCCCAGATCAAGCAGCACCGCTGGATGCTGGCTGACCCCACAGCTCTTCACCAGACCCTCAGCATGACCCTTCCCCTCACAGACTACAACTCTAACCTGGGGGACTACAGCGAGCCTGTCCTGGGCATCATGCAAACCCTGGGCATTGACCGCCACAGGACCATTGAGTCTCTGCAGAGCAGCAGCTACAACCACTTCTCAGCCATCTACTACTTACTGTTGGAGAGGATCAGGGAGCACCGAGCCCAGCAGCTCAGCCGTCAGTGTGGACCCTGGAACCAGAGACCCAGGAGCACCTCTGACTCCGGTACCCCAGAGGTCATCATGGAGGACAGCTTCAGACCTTCAGCCTACCCCATTCAATGCAAGAGTACCCCTCCCATGCACGCGGAGATGGAATATGACCAAGGTGCATTGTTCCAACGTGTGGTGTTCCCGGTGGAAGCCAGTCTGAACCGACTGCTGTGTAACCGCTCCATCTCCCCCAACAGCCTGGTGGAGACCAGCATCAGTGAAGAGGTGCGGCCCCGCGACCTGGAGGAGGaggtcacacacacctgctcGGCCCTCGTCCTGCCCACCACCACCTCCCGGCGACACACCCTGGCCGAGGTCTCTGCTCGCTTCCACCAGTGCAACCCCCCCTGCATCGTTGTCAGCCCCTCCGATGGTGCGTCGTCTGACAGCTGTCTGAGGTCCTCGTCCACCCCCAACCCCGCTCTGCACCCCGCTGTAGGTGGCCTGTCAGCCGTGCTGGCCATTGGGACTGAGCCTGGGGCACTGGTCCCCGCCGATAGCCCACCGGCCCTCTCCTGTCACCTCCTCCCCCAGGCTCAGGCTGCCAGCTTCCAAGAGGGCCGCAGAGCCTCCGACACCTCCCTGACACAAGGTCTGAAAGCCTTCCGCCAACAGCTGAGAAAGAACACGCGCACTAAAGGCCTTCTGGGTCTGAATAAGATCAAAGGTCTGGCGAGGCAGGTCTGCCCTCCGACCTCCGACCGCAGTAGCCGTGGCACCTGGGGATCATTAGGCCCCACCATCAGTGAGCACCGCAGCATGCTGGAGGAAGTTCTGCACCAGCAAAGGATGCTCCAGATCCAGCACAAGCCCCAACCTCAGCCTCCTTGGCCAGCACCTACCCAGAATCCCCCGCTCTTCCTGACCCAGCAGcagcccccctcccccacctcagTCTTCGCCGCCCCCTCCACCCTGTTCGACAACCccgccccctccctcctccagggGGAACCCCAACACACCCTGCCCTCCCACCAGAGCCCCCTGGCTCTCCAGCATGCCTTCTGGCAGCAACCTCTGGAGTTATCTTCACCCTCCTAtggctcctcttcctcctgctcctcctcttcctcctgctcctcctcttcctctctctcccctgtgggTACTGCTGCTTACCTCCTCGAGGCTCGACTGCACATAAGCCAGCAGTCCAGCCTCTACCTCGAGACCAACCTCTACCACCAGACCAACCCCCAGGACCAAGCCCAGGACCAGACCCAGGCTTTCACCAAGGGCCCCTTCCCCCTCATGCCTATGCAGGGGATGTGGAGTCTGGATTCAGCCTCCGGGAGAGAGTCTGAGATGCAGGAGCTGGGCTGCGGTGGACAGCAGCAGCTGAGAAGCTGTGTGATGGTGAAGTAATGGGGGGAAAGAAAGGAGAAGCAGAAAACAACAACTTCTTATTGGAACAGAGTGATTGTTCTGCATGAGGACAAAATGTCCTGGTGATGTCATCACTGATGGACAGGAAGGGTAAGCGCTTTTTGACAGTGGGAACAGAACTTTGAGACGTGGAGCTTCTCACAGACCATCAGATGATGAGCAGATGACGACAGATCAGATCCTCTAAAAGTGTGAAAAGAGAACAATTGGGTAGAAAAACTGAGCAAAGTGGAGATAGATTTTTTTAAACTGATGCAAGTCACAAATCTACACTCTTGAACAACATGCAAACACACATctagttgtgtgtgtctgtgtgtgatcacATAAGCTGAGAATTAAGCAATAACCAAACTCTGGAGTGACGGCTCTGAGGTCTCATCCGAACCCCCAGAGAAGCAATAAAGGTCTGGGACCCCCTCAACACAACAGGGGACCTCCGTTCCTCTCCTTTGTCCCTGATGGGGACCCCAACTCACCCCTGTCCCGCTGGGGAGGGGTGAGTGAAGGACTAGTCTTGAAACCCCAACGAGGACTGGTATCAATGTACCATACTAGATCATTTAAGACCTATTTCAAcagtttcatttttatttttttcatcaagtTTGAAAACAGGAGGATCCAGTCTTCCTGATTTTGTTTTGTGTTACTTTTCCAGTTTtgctcactgtatatagaccttaATTACTTATTACTTATTGTTTTCACTTAATTAGAAAAGACCAaagttatttctttatttttactttgtTTGTCTTTTGGAGAAGATATgacttattggtcacatacacatgtttagcaggtgttattgtgggtgtagcgaaatgcttgtgttcttagctccagcagtgcagtaatatctaaccatacacaacaatacacaccaatctaaaagtaaaagaatggaatttaGAAATATAGTAACATTAGGAGTAGGAGTATATTGGtgttataattatatatatatatatacacacatat

Function

GO: NA

KEGG:

id description
K19008 SIK1; serine/threonine-protein kinase SIK1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU331354 lncRNA downstream 4569 70120408 ~ 70120729 (-) True G292214
TU330976 lncRNA downstream 90535 70030764 ~ 70034763 (-) False G291884
TU330977 lncRNA downstream 90535 70030764 ~ 70034763 (-) False G291884
TU330978 lncRNA downstream 90535 70030764 ~ 70034763 (-) False G291884
TU330979 lncRNA downstream 90535 70030764 ~ 70034763 (-) True G291884
TU331398 lncRNA upstream 74035 70209567 ~ 70210180 (-) True G292252
TU331402 lncRNA upstream 79867 70215399 ~ 70215747 (-) True G292256
TU331428 lncRNA upstream 108337 70243869 ~ 70252589 (-) True G292272
TU331431 lncRNA upstream 112653 70248185 ~ 70248966 (-) True G292274
TU331434 lncRNA upstream 148124 70283656 ~ 70284013 (-) False G292277
XM_021597857.2 mRNA downstream 76905 70035040 ~ 70048393 (-) True LOC110520492
XM_021597856.2 mRNA downstream 76915 70035040 ~ 70048383 (-) False LOC110520492
XM_021597858.2 mRNA downstream 76915 70035040 ~ 70048383 (-) False LOC110520492
XM_021597853.2 mRNA downstream 154125 69949665 ~ 69971173 (-) True LOC110520490
XM_021597849.2 mRNA downstream 154126 69949665 ~ 69971172 (-) False LOC110520490
LOC118964359 mRNA upstream 84798 70220330 ~ 70220464 (-) True LOC118964359
XM_021597886.2 mRNA upstream 635624 70771156 ~ 70806536 (-) False LOC110520510
XM_036975066.1 mRNA upstream 635624 70771156 ~ 70806539 (-) False LOC110520510
XM_036975067.1 mRNA upstream 635624 70771156 ~ 70806540 (-) True LOC110520510
XM_021597888.2 mRNA upstream 671817 70807349 ~ 70810049 (-) True jagn1a
TU331092 other downstream 17348 70107540 ~ 70107950 (-) True G291977
TU330998 other downstream 128693 69980346 ~ 69996605 (-) True G291901
TU330123 other downstream 868754 69256005 ~ 69256544 (-) True G291138
TU329646 other downstream 1274444 68846611 ~ 68850854 (-) True G290713
TU329520 other downstream 1400384 68721808 ~ 68724914 (-) True G290602
TU332000 other upstream 584504 70720036 ~ 70720591 (-) True G292753
TU332200 other upstream 892087 71027619 ~ 71040152 (-) True G292919
TU333405 other upstream 1767782 71903314 ~ 71903908 (-) True G293984
TU333434 other upstream 2037517 72173049 ~ 72206798 (-) True LOC110504660
TU333986 other upstream 2435717 72571249 ~ 72575432 (-) True G294451

Expression Profile