RNA id: XM_036975050.1


Basic Information

Item Value
RNA id XM_036975050.1
length 1755
RNA type mRNA
GC content 0.44
exon number 8
gene id LOC110518747
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 70231555 ~ 70314000 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGTGCAGCAGCCGAAAGACCTCCAGCGGAGAGTCGTGGTAGCGCAACGCTTGCAGAAACAGTCCTTTCAGTTTACTGTTGTATGGGCATTGGGCAGAATGGAGACCAAACCAGTGATAACCTTTCTCAAAACCCTCCTCATCGTTTACTCCTTCGTGTTTTGGATCACAGGAGTGATCCTCTTGGCAGTGGGAGTATGGGGGAAGTTTATGATCGGCCCGTATATCTCTCTGATAGCTGAGAACACCACCAACGCTCCGTACGTCCTCATCGGCACTGGGACTGTCATCATCGTCTTTGGCCTGTTCGGATGCTTCGCCACCTGCAGGGGGAGCCCATGGATGCTCAAActgtATGTAATGTTCTTGTCCCTGGTGTTCCTAGCTGAGTTGGTGGCTGGGATCTCTGGCTTTGTTTTTCGTCATGAGATAAAAGGTACCTTCCTGAGGACGTATACTGACGCCGTGTTGAATTATGATGCTGAGGATGAGAAGAGCCTGGCTGTGGACAACGTCCAAAGCAGCctgCGTTGCTGTGGGGTGAACAACTACACCAGCTGGTTGGGCAGTGTGTACTACCCTGCTAACGGTTTTCCCCTGAGCTGCTGCTCCAACTCCTCTGACTGCAGCCCTCAGGACCTCCGCAACACCACCATAAACCACACCAAGGTCTACCAGCAGGGCTGTTATGAACTGGTAACCTCCTTCCTTGAGACCAACATGGCCATCATCGCGGGAGTAACATTTGGAATTGCCTTCTCACAGttgatTGGCATGTTGCTGGCCTGCTGTCTGTCCAGGATCATTACTGCTAATCAGTATGAGATGGTGTAGCAGGGAGAGCAGaAGTACCATTCCTTAACTTGATACTGTGCCATGAAGACTTTCGCACAGTACCTTCAACTCCACTGAGGGACTCAGGCTGCAGTTGGAAGTTTCTAGTAAGCACTTATGTAAAATCAGCTTACCCTCCCCAATGCAACACTGACCTTGGTTAAGCATCTATGGGCAACTTAATCCTGCTCCATATTACAAGTTTAGCCATCTCTAACACTTTGGGTAGAAGTTGTCCTTAGGGACATATCTAGGAACAGGTCACACGAAGCCTTGATGCTAAACTTAACTATTAGGATGATGAATGGATATCTGACCCTGCATCAGTGCTAAACGCCAACATCATCCTGCCCCTTAGCAGTCTTTTTCTCACTGTCCTCTCACAGCACCACCTTGTGGTCTGGCATGCTCCATACAGGGCCTAGCATTTAAAAAGCAATGCACAGATTAGTATGAAATTATTAACCCATATTTAAAGATATACAGTAGCCAGCATACACTGTATTTTCATAATGTTTTTGATCACCGCTGTAAATACCCAAGCTACACATATATAGAGAAGATATGTTGATATAACATTGAGAGAGCATTTAGAGCTAACTTTTAGCCTTTCATTTGCATCCCTGCTATTTCGCTGCTTCATGGATGATATCTCAGACTTTTGTGTCCATATCTATGATGTTAGCTTACAATGAACTAACTGTGTAATCAATTTGGTCTCTGGATGTGTAGATGTCTTAATaattaattatttattattataacAATTAATGAAGTGTGTGTCAAGTTTGGTTTGGAACACTGAGCTGTTCCGATTTAATATATGTGATCGTAGGTTATTTTAATATATGTGAGCGTCGGTTCTTTTTAATATAAATGAGCCTCGAATTTTGACGGATAAATATATTCTTTATTGATTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU331173 lncRNA upstream 8042 70216619 ~ 70223514 (+) True G292052
TU331123 lncRNA upstream 88848 70142182 ~ 70142708 (+) True G292005
TU331111 lncRNA upstream 109054 70121346 ~ 70122502 (+) True G291995
TU331086 lncRNA upstream 127183 70104174 ~ 70104373 (+) True G291971
TU331076 lncRNA upstream 133974 70097372 ~ 70097582 (+) True G291961
TU331184 lncRNA downstream 562 70251759 ~ 70252589 (+) True G292061
TU331207 lncRNA downstream 45314 70296511 ~ 70296839 (+) True G292081
TU331208 lncRNA downstream 45988 70297185 ~ 70297397 (+) True G292082
TU331210 lncRNA downstream 47836 70299033 ~ 70299232 (+) True G292084
TU331213 lncRNA downstream 52337 70303534 ~ 70303733 (+) True G292087
XM_021597866.2 mRNA upstream 138749 70072804 ~ 70092807 (+) True LOC110520495
XM_021597860.2 mRNA upstream 161086 70057402 ~ 70070470 (+) False LOC110520493
XM_021597859.2 mRNA upstream 161086 70057410 ~ 70070470 (+) False LOC110520493
XM_021597862.2 mRNA upstream 161086 70060415 ~ 70070470 (+) False LOC110520493
XR_002472992.2 mRNA upstream 161225 70057383 ~ 70070331 (+) False LOC110520493
XM_021597870.2 mRNA downstream 40643 70291840 ~ 70293566 (+) True LOC110520498
XM_036975060.1 mRNA downstream 212567 70463764 ~ 70538145 (+) False LOC110520505
XM_036975059.1 mRNA downstream 212571 70463768 ~ 70539757 (+) False LOC110520505
XM_036975056.1 mRNA downstream 212572 70463769 ~ 70539757 (+) False LOC110520505
XM_036975057.1 mRNA downstream 212572 70463769 ~ 70539757 (+) False LOC110520505
TU330553 other upstream 161199 70057540 ~ 70070357 (+) True LOC110520493
TU330474 other upstream 279388 69949667 ~ 69952168 (+) True G291461
TU330486 other upstream 309437 69919182 ~ 69922119 (+) True LOC110504602
TU330385 other upstream 361344 69862060 ~ 69870212 (+) True LOC110520485
TU330321 other upstream 535720 69695395 ~ 69695836 (+) True G291327
TU331609 other downstream 325921 70577118 ~ 70581089 (+) False LOC110520507
TU331610 other downstream 325921 70577118 ~ 70581089 (+) False LOC110520507
TU331619 other downstream 325921 70577118 ~ 70581089 (+) False LOC110520507
TU332513 other downstream 1114986 71366183 ~ 71366423 (+) True G293204
TU332454 other downstream 1205244 71456441 ~ 71477947 (+) False il1rapl1a

Expression Profile