RNA id: XM_021597886.2


Basic Information

Item Value
RNA id XM_021597886.2
length 1777
RNA type mRNA
GC content 0.59
exon number 8
gene id LOC110520510
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 70771156 ~ 70806540 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCACTACTGCGCGCTCCGCTGTATGCCACGTACAGGTTTACGTCGACAAGCGGGCAGACTTCCTCATGTGAGGCTAGGATTCTGTGTTTGCCAGCCCTGGTTAAATATTTTGGCTGACAAGGTCCTGAGAGAAATACCGACACAACAGTGGGATTAAGTCGTCCAGTTACAGAGGTGGGAGCAGTAGACTGTACCATGAACGGACAACTGGACCTGAGCGGCAAGCTGATCATCAAGGCCCAGCTGGGCGATGACATCAGACGCATCCCCATCCACAATGAGGACATCACCTATGACGAGCTGGTGCTGATGATGCAGCGTGTCTTCAGGGGCAAGCTGCAGAGCAACGACGAGGTCACCATCAAATACAAGGACGAGGACGATGACCTCATTACTATTTTCGACAGCTCGGACCTGTCTTTCGCCATCCAGTGCAGTAGGATCCTCAAACTCACTCTCTTCGTGAATGGTCAGCCGAGACCTCTGGAGTCCTGTCAGGTAAAGTACCTGCGTAAGGAGCTCATTGGCATCAGGAACAAAATTAACGGTCTCTTGGAATGTCTGGAGCCCCCCTCAGAACCTGGCCTGGCTGCCTCCGCACCAGACACGgactCGGTGGATGTATGTGAGGGGAGGGTGGTGGCAGCGGTGAAGCAGGCCCCGGTCCCAGTCAGTGCGGCCAGCATGTCGGCCTTCGACCCCCTGAATAAGCAGGACGAAGTCAGCAAGAACGTCATCTCCGCCTTTGGCCTGAGTGAGAACCATGTCTCAGctcccccGGGTGTTTCGTCTGTGGAGCGGTCAAATACTCCAGACAGCATTGCGTCATCGTCGTCCGCCGCCCCCCAGCCACAGGCCCCCTACGCAGGGATGCAGCAGGGACCCCCAGCAGCCCTCGACGGTCAGATGTACCAGCAGTACCAGTCTCCAGGTGGATACCCTCCCCAGCAGCCAGCACCGCAGCAGCAGTATGGCATGCCTGcagGATGCACCCCCCAGCCCGGCACCCCTCAGCCTCAACAGCAGCAGTTCCAGAACTACCCTGCCCCCACCTCCCAGGCCCCCACCCCCAGCCAGGGCCCAGCCCCCGGCTTTCAGGGAGGCCAACAGCAGGCCGCTCCACCCCAGGGTCCCCAGCAGTACCCCCCAGGTGCCTTCCCTCCCCAAAACTACACCTCCCAGGCCAACCAGCCTGCCAACTACAGCCTACCCCCCACCTCCCAGTCTGGCCAGGGTTACCAGGCCCGTCCCAGCTACACTCCTCCCCCCGGTAGCAACGTTACCCCCCCTCCTGGGGCGTCCAACCCCTATGCCCGCAACCGGCCCCCCTTCGGCTCGGGCTATGCCCAGCCTGGCCCTGGGTACCGGTAAAAGAGAAGGAATGGAAAACGTTATCCACCCACCCCTCCCCTTTGTGTCCTGGCTGGCTCTGTTTGGCCTGGGTTCGGTAAACATGGTCTGCTAATCGGTCCATCCGTCCTTCTGTCAGTCCTCAGTCACTGATGAGTCCATATCCAAAACAaactacaacccccccccccccccccccatctgatcGTCTGTGTTCTGTCTcgaccccaccaccacacacacaaacccatgtTATTGTCTGTCTcgaccccaccacacacacacacacacccacgttttattgtctgtgttctgtctcgaccccaccaccacacatacacacccatgtTATTGTCTGTCTCGACCCcaccaccacacatacacacccatgttattgtctgtgttctgtctcgaccccaccaccaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU332027 lncRNA downstream 27034 70743342 ~ 70744122 (-) True G292773
TU331923 lncRNA downstream 155608 70613960 ~ 70615548 (-) True G292686
TU331906 lncRNA downstream 190062 70579424 ~ 70581094 (-) True G292669
TU331606 lncRNA downstream 196897 70573179 ~ 70574259 (-) True G292420
TU331552 lncRNA downstream 206501 70555501 ~ 70564655 (-) True G292384
TU332146 lncRNA upstream 142861 70949397 ~ 70949788 (-) False G292869
TU332147 lncRNA upstream 142861 70949397 ~ 70949788 (-) False G292869
TU332148 lncRNA upstream 142861 70949397 ~ 70949788 (-) True G292869
TU332208 lncRNA upstream 234624 71041160 ~ 71041699 (-) True G292927
TU332212 lncRNA upstream 237104 71043640 ~ 71043881 (-) True G292931
LOC118964359 mRNA downstream 550692 70220330 ~ 70220464 (-) True LOC118964359
XM_036975048.1 mRNA downstream 635624 70125298 ~ 70135532 (-) True LOC110520496
XM_021597857.2 mRNA downstream 722763 70035040 ~ 70048393 (-) True LOC110520492
XM_021597856.2 mRNA downstream 722773 70035040 ~ 70048383 (-) False LOC110520492
XM_021597858.2 mRNA downstream 722773 70035040 ~ 70048383 (-) False LOC110520492
XM_021597888.2 mRNA upstream 813 70807349 ~ 70810049 (-) True jagn1a
XM_021597890.2 mRNA upstream 4068 70810604 ~ 70837491 (-) True LOC110520512
XR_005051368.1 mRNA upstream 89973 70896509 ~ 70907574 (-) True LOC118964322
XM_036975070.1 mRNA upstream 138498 70945034 ~ 70950599 (-) True tmem30c
XM_021597894.2 mRNA upstream 144145 70950681 ~ 71009703 (-) False cmss1
TU332000 other downstream 50565 70720036 ~ 70720591 (-) True G292753
TU331092 other downstream 663206 70107540 ~ 70107950 (-) True G291977
TU330998 other downstream 774551 69980346 ~ 69996605 (-) True G291901
TU330123 other downstream 1514612 69256005 ~ 69256544 (-) True G291138
TU329646 other downstream 1920302 68846611 ~ 68850854 (-) True G290713
TU332200 other upstream 221083 71027619 ~ 71040152 (-) True G292919
TU333405 other upstream 1096778 71903314 ~ 71903908 (-) True G293984
TU333434 other upstream 1366513 72173049 ~ 72206798 (-) True LOC110504660
TU333986 other upstream 1764713 72571249 ~ 72575432 (-) True G294451
TU334284 other upstream 1968871 72775407 ~ 72776607 (-) True G294697

Expression Profile