RNA id: XM_021597890.2


Basic Information

Item Value
RNA id XM_021597890.2
length 4273
RNA type mRNA
GC content 0.50
exon number 3
gene id LOC110520512
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 70810604 ~ 70837491 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCCCAGTAGTAGATATAAGACAGGTCCATGCCGTGATGCTGTTCGGAGCTCATAACCCAGGGTTGTCTCAGTacatccatctgtctgtctctccatctgtctgacTGCAGTGATTATTCCCCCTTTAAACGGCCACTCACAGAGAAAGGCCATGGTTGTACCTCCCTTCTccgcccccctccctctcctagtggcTCTGCTTCAGCTTGCAGTACTACCTCTTGTCCACGCGGGGGCGTACTACAGACACAAGCAGCACCCGCAGCAGCATCAGCCCACGCCACACCTGTCCCACATGGGCATAGGGGGTAAGGAGCAGCACCCTCAGCAGCATTGGCCAGGAAAAGAGATGCCCCACATGCAGTACCCCCAGTACAGAAAAGAGATCCCACAGATGTCCATGCACATGGGCAAGACGAACCCCCACAAGGGTGGAGTAGTCAACAGTGGACAGGATAAAGGTAAAACCATCCCCAGTGGGGCAGTGGGAGGTCTCCCTGGGGGTCTGCCAGGAGAGCAGGGCCCAGCTGGGCCTCCCGGACCTGAGGGTCCCTCTGGGCCTCCAGGACCTCCCGGGGAAGGACAGCCAGGAGGGGAAGGAAAACCAGGCCACGCTGGTCCCCCAGGATTCCCTGGAATAGGAAAACCAGGACTCCCAGGAATTCCAGGCAAGCCAGGCAGCATGGGAGAGCCAGGAGTACCTGGAGAATTGGGCCCCAGCGGCAGAGAGGGTCCGATGGGGCAGCCAGGGCCTCAGGGGTCCCCTGGTCCTTCAGGTCTTCCAGGGATAGGAAAACTAGGGGCTGGGGGGTTGCCAGGACAACCAGGATCCAGAGGAGAGCCAGGACACAAAGGCCTGCCGGGACTACCAGGATTACCAGGACCCAAGGGTGACAAGGGGATTGGACAGCCAGGACAGCCAGGCCACAAAGGACTAGCAGGACCTCCTGGACCTCCAGGACAGGGAGGGATGCCTGGTGTGGGCAAGCCTGGAATGAATGGCATGTCAGGGCCACCAGGAGGACCAGGGAAACCAGGCCTCCCTGGAGAGCAGGGGCTGGCTGGACCAGCAGGAGAGGGCGGAGAGCCCGGTCCACCAGGGCTGCCAGGTCAGGGAAAACCTGGCCAGAATGGTCTGCCGGGACAACCAGGAATGCCCGGTGGGAAAGGGCACCCAGGCCCTCCAGGTTTTCCAGGGAAGCCTGGATTGCCTGGATTCGGAAAACCAGGATTCCCAGGACCCAAAGGAGATAAGGGGATGGCTGGGATGCCTGGAGGCCCAGGACCAAAGGGAGACAAGGGCCATGGAGGACTGCCTGGTATGCTAGGACAGCCTGGATCAATTGGACCAGCTGGTCCCCTTGGCCCTATGGGACCCCCTGGAGGTCTGGGTCAACCAGGGCCAAAAGGCGAGGCTGGAGAAGGAGGTCATAAGGGGTTGCCTGGTGGGCAAGGGGAGCCTGGTCCTACTGGACTGACTGGTCAGAATGGCTTccctggagagggaggagagcctGGGCCAAGGGGTCCCACTGGGCCTGTAGGACCCCAAGGGGAAGGCGGACACAAAGGGTTACCAGGCGCCCCTGGCATTCCAGGCCTACCTGGgccaaagggagagggaggacttCCAGGCGAGAAGGGTCCCCAAGGTCCTAAGGGCATTCCAGGTCTGGGAGGTGCAGGTGGGCCGATCGGACCTCCTGGTGCTCCTGGGTCTAAAGGTGACAGCGGAACTCCTGGTCTTCCCGGCGTTGATGGTAAGGGAAACCCAGGTGTCCCTGGTCCTCTTGGACCTCCAGGTAAAGAAGGTCCTGGAGGACCACCGGGAAGCCCAGGCCAGCCAGGTCCACCTGGTCCCCCAGGGCCTCCCGGACCCACTGACATGGGAGCAGTCCTCCCTGAGATGGGTTTTCCTCCTGGGCTGGACGGAGTCAAGACTGCCGGTTATGGCAAGAAGGGAAAATATGGAGGAAACGGAGGAGAAGTGATGGGCCCCAACGGCCTGGAGATGCCCGCGTTCACGGCTCTGGTGACCACGCCCTTCCCACCTGTGGGCACGGCTGTGGTGTTTGACAAAATCCTGTACAACGGCCGTCAGAACTACAACCCCCAGACAGGCGTGTTCACCTGCGACATGCCCGGGATCTACTACTTTGCCTACCACATCAGCTGCAAAGGTGCCAACGTGTGGGTGGCGCTGATGAGGAACGATGAGCCTGTGATGTACACATATGATGAGTATAAAAAGGGCTTCCTGGATCAGGCATCGGGGAGCGCAGTGTTACCTCTACAGCCCGGGGACACTGTGTACCTCCAGCTACCCTCGGACCAGGCCGCAGGACTATACGCTGGCCAATACGTCCACTCCTCCTTCTCTGGGTACTTGTTGTACCCCATGTAAGAACACCAACCttcagagaggaagagatggtcACAAAGAGAGAGAATGTTGGAGAAATGTAAACATTGATTATAGAATTCTTTAAATTGATATGTTGTTTTAAAAACATCAATTATCTGCTGAGATTGACGCTGTTGAGATCGACAGTGACGGGAGGACATGTCGGACCATCCCAGGGAAATTCTGAGAGAGGAGTGTGCTTGTGTGAGGGTACATATATGCAGTTTTTAATAACAATTTATGTTGGGGTACAAAGATTGCTGCATCTATCTACTGGTCTGAGAAGTTGTCACAACAACACTGCATTAAAATATTCCATTACAGCAACTGGGTTCATTTATTGTAAAATGTGGTGATATATATTGGTTTGATTTATAGTACAGCACAGACTGATGTGGAGACTGTAGAAGAAAGAATGGGATATCTGAGGTAtatatttagtattgtgtttTCCCCAGCCCCTACATGTTCCTATTTAAACTGGCAGCTGCCATAAACAAAACTGTGGCAAAGAATGTAAATTGGATAACTTTAAAAAGAAAACTAAAGAAAATAAATTGAATAGCTATATTGGCACCTGAACTTTTGTATTACGGTACTTATAAAATGGCAATTGAAAACCAATAGAGACAGTTCAAGATTCACATAAAGTGGTGCTATCATTTATGTGACATTTTAGTTTGTTACAtaactttgttgttttgtttttgttttatttgtgtgattattttttgttgttactTTTGCAGACAAGCATCATCTATGATGTTTATAGGGGTGATTTTGTTGCATGAAATGGATGGGAATGTAATGCATTATGGGTGTATTGGTTCAAAGCGATGCCTCTTGTGGCACGTACAGAGTAATGCTCCAACAGACACTGACTAGCCCACAAAAATGAAAACCACTGCTCTCATTACAAAGCCCCTtcttgctgtatgtctctgttGTCAGCTGAATGAAGCAGGAGCACTATACTGACAGAGGTATGAAACAAGTTTGACCAACAGATAGACACTCATTTTGATGGCCTATACGGTTATGTAAGTAGGATAGGAATTGATAATCAATTGTGAATAACTTTTGAAAAAGAGAATTGAATTAATTAATTACTCTGGGGAAAATGGTGTGTAGGCCTATTCCCTCTGGGTTCAGCAGTACAGAATTTAAGTCATTGGGTTAAAGGTACTGTATGTGGAGGTTAAGATTGAAGGTTAATAAATACTTTGATGTCAATTAGCGAGAATAATGCCCAAAACAAACCAGGAGGAGGTGTTTGTGGTTACAAGTTAGTGAGGAGACTTATAGACAACGAATATAGACAAAGAATAGAATgtcaaaagagagagggggaagggtgaAAATGCCTTCCTGCATgccccctccctcacctctcacccACCTATATATCCCTATACCTCACCCCTCTAGTCTACCCTTCCTTTCTACCCATCTCTACTCTTCTACCCCTCCCCTGACTCCAGGTATCAATTCTGTTTTCTATCTTTATTTCACTCAATGGTGCTAAACACAGTataatctagaagaaaaagaaacgcacacctattaagacgaggtgctggctagcggagtagaaaacttgaaaataaaagagagccgcacactctaggagctcagatgcaaaaatgtaattaccaacgtttcaacAGCCAaggattataccctgatgaagacagcttggctgtcgaaacgttggtaattacatttttgcatctgagctcctagagtgtgcggctctcttttattttcaagctAAACACAGTATAACCAAACAAAACCTTGAGTTTTTATGTttttactgttatactgtagatgttgttttttaaataaagatgatttaaCTAAAA

Function

GO: NA

KEGG:

id description
K23455 COL8A; collagen type VIII alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU332027 lncRNA downstream 66482 70743342 ~ 70744122 (-) True G292773
TU331923 lncRNA downstream 195056 70613960 ~ 70615548 (-) True G292686
TU331906 lncRNA downstream 229510 70579424 ~ 70581094 (-) True G292669
TU331606 lncRNA downstream 236345 70573179 ~ 70574259 (-) True G292420
TU331552 lncRNA downstream 245949 70555501 ~ 70564655 (-) True G292384
TU332146 lncRNA upstream 111906 70949397 ~ 70949788 (-) False G292869
TU332147 lncRNA upstream 111906 70949397 ~ 70949788 (-) False G292869
TU332148 lncRNA upstream 111906 70949397 ~ 70949788 (-) True G292869
TU332208 lncRNA upstream 203669 71041160 ~ 71041699 (-) True G292927
TU332212 lncRNA upstream 206149 71043640 ~ 71043881 (-) True G292931
XM_021597888.2 mRNA downstream 555 70807349 ~ 70810049 (-) True jagn1a
XM_036975067.1 mRNA downstream 4064 70771156 ~ 70806540 (-) True LOC110520510
XM_036975066.1 mRNA downstream 4065 70771156 ~ 70806539 (-) False LOC110520510
XM_021597886.2 mRNA downstream 4068 70771156 ~ 70806536 (-) False LOC110520510
LOC118964359 mRNA downstream 590140 70220330 ~ 70220464 (-) True LOC118964359
XR_005051368.1 mRNA upstream 59018 70896509 ~ 70907574 (-) True LOC118964322
XM_036975070.1 mRNA upstream 107543 70945034 ~ 70950599 (-) True tmem30c
XM_021597894.2 mRNA upstream 113190 70950681 ~ 71009703 (-) False cmss1
XM_036975071.1 mRNA upstream 113190 70950681 ~ 71009719 (-) True cmss1
XR_005051369.1 mRNA upstream 834968 71672459 ~ 71676171 (-) True LOC118964323
TU332000 other downstream 90013 70720036 ~ 70720591 (-) True G292753
TU331092 other downstream 702654 70107540 ~ 70107950 (-) True G291977
TU330998 other downstream 813999 69980346 ~ 69996605 (-) True G291901
TU330123 other downstream 1554060 69256005 ~ 69256544 (-) True G291138
TU329646 other downstream 1959750 68846611 ~ 68850854 (-) True G290713
TU332200 other upstream 190128 71027619 ~ 71040152 (-) True G292919
TU333405 other upstream 1065823 71903314 ~ 71903908 (-) True G293984
TU333434 other upstream 1335558 72173049 ~ 72206798 (-) True LOC110504660
TU333986 other upstream 1733758 72571249 ~ 72575432 (-) True G294451
TU334284 other upstream 1937916 72775407 ~ 72776607 (-) True G294697

Expression Profile