RNA id: XM_036965166.1



Basic Information


Item Value
RNA id XM_036965166.1
length 1200
RNA type mRNA
GC content 0.57
exon number 4
gene id LOC110504652
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 71754279 ~ 71764744 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATGAGCGTGAAGGCTGGGTCAGAGCCGACTGCAGCCACCCTGGTTCAGGCCTATCCAGGCCAGCCAAGCAGAAATGGAGTGCTCCAAAGCCAGAGGCCCTCCCAGGCGAGTGCCCAAATCCAGCCCCAGGCTTTATCTCCACCGCGGGACCTGCATTCCCAGAGGCCCCATCCTGACAGACACATCTCCCCAGAGATGGAGATCCCTGGGCAGGCTTGTTCCGGTGGCGAGGTCCCCTTCCTGGTGCCCTCCTTCTGCCAGAGCATCTGTCAGAACTACAGCGACCTCCACATGGGGGGGACCAGGTGCTGCCTCTCGGCCCACAATGGGGAGGTCCTGCGATGTAGCGACAACCAAGAACATTCCTGTGACGTAACCCCGACCGCAGAAGACTCTCCCCCAGATCGGGCCACTGAAGACAGGCTTCTGCGTCCTCTCCAGTGGGGCTCATGCTCGGGGTCCTCCCGCTGGAGGGTGGGGAGCGGCCACGACCGGAGCGTCCTTTTTCAGGGGCTCGAGGGGCCACTCTCTAACTCGCAGCTCAACCGCTACCTGGAGAACAAGAGACTGGACCTGTAACAACAGTACATGCTGGAGAACATGGTCCATGATTGGGGCTGTGGTGAGGGCTTGCCCTGCCCTCTGCTGGCCTCAGAGTTGATTCTTACCAGCCTGGATCAGATCACCCTGCAGCTGAGCCGTGAGGGCCATCTGGAAGCGGGCCGGGCCAAAGACATGTGCCTACTGAGGGTGGCCAGCGGCCTGCAGTCCAGTGAGATCAGTACTCCCCTACTCCAGATCTCCATGGATCTGCAGCTCCCCACTGATACTgctactgATTATGAATATCGTAAGTCTTCCTCATTCTACATCCTCTTGACATGGAACTCTGAGTCCTGGGACTGCAAGTCTTCCTCATTCTACATCCTCTTGACATGGAACTCTGAGTCCTGGGACTGCAAGTCTTCCTCATTCTACATCCTCTTGACATGGAACTCTGAGTCCTGGGACTGCAAGTCTTCCTCGCTCTCCATTCTCTTGACATGGAACTCTGAGTCCTGGGACTGCAAGTCTTCCTCGCTCTCCATTCTCTTGACATGGAACTCTGAGTCCTGGGACTGCAAGTCTTCCTCATTCTACATCCTCTTGACATGGAACTCTGAGTCCTGGGACTCTGCAAGTCTTCCTAGATCCCCTTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU333114 lncRNA downstream 1956 71751912 ~ 71752323 (-) True G293739
TU333113 lncRNA downstream 2485 71751390 ~ 71751794 (-) True G293738
TU333106 lncRNA downstream 14240 71739534 ~ 71740039 (-) True G293731
TU333104 lncRNA downstream 15693 71738279 ~ 71738586 (-) True G293729
TU333095 lncRNA downstream 22483 71731579 ~ 71731796 (-) True G293725
TU333122 lncRNA upstream 20706 71785450 ~ 71785848 (-) True G293747
TU333130 lncRNA upstream 37225 71801969 ~ 71802295 (-) True G293755
TU333197 lncRNA upstream 92519 71857263 ~ 71857466 (-) True G293818
TU333201 lncRNA upstream 96727 71861471 ~ 71865225 (-) True G293822
TU333208 lncRNA upstream 135672 71900416 ~ 71900646 (-) True G293828
XM_036975076.1 mRNA downstream 37920 71708482 ~ 71716359 (-) False LOC110520517
XR_005051369.1 mRNA downstream 78108 71672459 ~ 71676171 (-) True LOC118964323
XM_036975071.1 mRNA downstream 744560 70950681 ~ 71009719 (-) True cmss1
XM_021597894.2 mRNA downstream 744576 70950681 ~ 71009703 (-) False cmss1
XM_036975070.1 mRNA downstream 803680 70945034 ~ 70950599 (-) True tmem30c
XM_036975077.1 mRNA upstream 9286 71774030 ~ 71784997 (-) False rnaseh2b
XM_021597898.2 mRNA upstream 9286 71774030 ~ 71785012 (-) False rnaseh2b
XM_021597899.2 mRNA upstream 9286 71774030 ~ 71785013 (-) True rnaseh2b
XM_021597901.2 mRNA upstream 167677 71932421 ~ 71935177 (-) False trim13
XM_021597900.2 mRNA upstream 167677 71932421 ~ 71935929 (-) False trim13
TU332200 other downstream 714127 71027619 ~ 71040152 (-) True G292919
TU332000 other downstream 1033688 70720036 ~ 70720591 (-) True G292753
TU331092 other downstream 1646329 70107540 ~ 70107950 (-) True G291977
TU330998 other downstream 1757674 69980346 ~ 69996605 (-) True G291901
TU330123 other downstream 2497735 69256005 ~ 69256544 (-) True G291138
TU333405 other upstream 138570 71903314 ~ 71903908 (-) True G293984
TU333434 other upstream 408305 72173049 ~ 72206798 (-) True LOC110504660
TU333986 other upstream 806505 72571249 ~ 72575432 (-) True G294451
TU334284 other upstream 1010663 72775407 ~ 72776607 (-) True G294697
TU334351 other upstream 1111595 72876339 ~ 72880854 (-) True LOC110520539

Expression Profile