RNA id: XM_021597899.2


Basic Information

Item Value
RNA id XM_021597899.2
length 1450
RNA type mRNA
GC content 0.51
exon number 10
gene id rnaseh2b
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 71774030 ~ 71785013 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTTCCAAATTCCGTGACACGGAAGTACCTTTTTTGTGCTGCTGACGAGACGCTGATTTGTTGCACTGACAACaaccagctagctaactatcttcttgaaaaaaaatacacttttaaattgttgcgtgccattttaactagctagctagccgagATCAAAATGACCACTAAAAAGAAGCGGACACCACATTCACCAAACGACAGATGGGTTGTTGTTGCAGCAGACTCTGCAGTGGAAACACCAAAGAAAGATGACAGTGACCCCACTTTCATCCGGCTTAGGAACCCTTCAACAGATGCAGCTTCTTTGTACCTGTTGGGCAGTGGTGATGTGCAGCTGTATGAGGTCAAAGCCTTCAACGAGGACTTCCACTCCTGGTTCATTGGCCAGACAGTACAGCGAGATGGGAGACTTCTGTATGTCACTCCAATGGATCCCCTCTACCTACTGTTGCCCTACTTGATCAAAGCTGGTGAAGAGGGGAAGTTCCAGCCCGTGGACCAGGTAGTGATGGACGAGGACTTCCCAGCATGCACCAGGCTGCTGAGCTGCATACGCTCCCAGGCCTCCCTGCACCATGTGGCTGAGGagaaagAGGTGGGCAGTCAGAAGTTTCAGCgctacagccaggagaggaccaTGGAATGGTTAAAGAAAAAGGCTGAGAGGACAGTGAAGACCCTCAGAAAGAGTAACATCTCAGTGGGAGAGGGAGTAAAGTCCACAACGTATGTCCGAGTCAAGCAGGAGTCAGAGACCCAGGAAGAGGACTACCTGCGGTATGCCCATGGCCTGATATCTGAGTACATCAGTGAAGACCTGAGCAAAGCCCTCCTCAAGCATCTCCAGTTACCTGAGCTCTCAAGTCCTAAGGAGGTGGAGCCTCCCTCAAAGCCGCCCAAGAAGATGAGTGCTGCACAGAAGACCCTGGCCAAGGTGGACAAAACAGGCATGAAGAGCATGTCTGCCTTCTTCAGCCCCAAGGGCAAGGCAGAGAAAAAATGAATGTTAGAATGATGCAGCAGTTTGTGTCTGTcggtgtgcgtgtctgtctgtcggtcggtgtgtgtgtctacagtgtgtgtttctgtcggtctctgtgtgtgtcggtcggtcagtgtgggtgtctagtgtgtgtgtgtgtctgccggtGTGcgtgtctacagtgtgtgtgtctgtcggtctctgtgtgtgtgtcggtcggtcggtttctagcgtgtgtgtgtctgtcagtgtgtgtcggtgtgcgtgtctatagtgtgtgtctgtcagtgtgtgccggtcggtgtgtgtgtcggtgtagTGTTTATGTCTGTCGGTGTGCGTgtctactctgtgtgtgtgtgtcggttggtcggtgtgtgtgtagtgtgtctacagtgtgtgtgtgtgtctacagtgtgtgtgcacgcacacaTGTGCTTTTGGTAATAAAGAAAATAACTATT

Function

GO: NA

KEGG:

id description
K10744 RNASEH2B; ribonuclease H2 subunit B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU333114 lncRNA downstream 21707 71751912 ~ 71752323 (-) True G293739
TU333113 lncRNA downstream 22236 71751390 ~ 71751794 (-) True G293738
TU333106 lncRNA downstream 33991 71739534 ~ 71740039 (-) True G293731
TU333104 lncRNA downstream 35444 71738279 ~ 71738586 (-) True G293729
TU333095 lncRNA downstream 42234 71731579 ~ 71731796 (-) True G293725
TU333122 lncRNA upstream 437 71785450 ~ 71785848 (-) True G293747
TU333130 lncRNA upstream 16956 71801969 ~ 71802295 (-) True G293755
TU333197 lncRNA upstream 72250 71857263 ~ 71857466 (-) True G293818
TU333201 lncRNA upstream 76458 71861471 ~ 71865225 (-) True G293822
TU333208 lncRNA upstream 115403 71900416 ~ 71900646 (-) True G293828
XM_036965166.1 mRNA downstream 9286 71754279 ~ 71764744 (-) True LOC110504652
XM_036975076.1 mRNA downstream 57671 71708482 ~ 71716359 (-) False LOC110520517
XR_005051369.1 mRNA downstream 97859 71672459 ~ 71676171 (-) True LOC118964323
XM_036975071.1 mRNA downstream 764311 70950681 ~ 71009719 (-) True cmss1
XM_021597894.2 mRNA downstream 764327 70950681 ~ 71009703 (-) False cmss1
XM_021597901.2 mRNA upstream 147408 71932421 ~ 71935177 (-) False trim13
XM_021597900.2 mRNA upstream 147408 71932421 ~ 71935929 (-) False trim13
XM_021597903.2 mRNA upstream 147408 71932421 ~ 71937033 (-) True trim13
XM_036964604.1 mRNA upstream 192800 71977813 ~ 71979314 (-) True LOC110505427
XM_036975078.1 mRNA upstream 201307 71986320 ~ 71995551 (-) False LOC110520524
TU332200 other downstream 733878 71027619 ~ 71040152 (-) True G292919
TU332000 other downstream 1053439 70720036 ~ 70720591 (-) True G292753
TU331092 other downstream 1666080 70107540 ~ 70107950 (-) True G291977
TU330998 other downstream 1777425 69980346 ~ 69996605 (-) True G291901
TU330123 other downstream 2517486 69256005 ~ 69256544 (-) True G291138
TU333405 other upstream 118301 71903314 ~ 71903908 (-) True G293984
TU333434 other upstream 388036 72173049 ~ 72206798 (-) True LOC110504660
TU333986 other upstream 786236 72571249 ~ 72575432 (-) True G294451
TU334284 other upstream 990394 72775407 ~ 72776607 (-) True G294697
TU334351 other upstream 1091326 72876339 ~ 72880854 (-) True LOC110520539

Expression Profile