RNA id: XM_021597909.2


Basic Information

Item Value
RNA id XM_021597909.2
length 2963
RNA type mRNA
GC content 0.45
exon number 16
gene id LOC110520524
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 71986320 ~ 71996884 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgtagattaggacctaatttatttatttcaatagaCTGATTTCCTCATTAACTTAGTAAAATCTTAAACATTGttgcgtttgtatttttgttaAGTACGATTCCTGACGTTTACTGTAGTTGGCAATGCACAATGCCCTCTTGCACCCCCCCAAGTAGAATGAAACCAAAACCACACAGATACTTGCCTCGACAACATTTCTGAAGAAGCGAAACCGGATGCCCAGCCAACACGGAATTTCTTAGTGGCAGACTGGCGGAGGTTGGCGCGAACAATTATCTGATTTGGGGAAGTTGTTGCGAAAGATAATACACGAACACCAGCAGGATGGGTACCGATCAACATGGCAAGAAAGTCCAATGCGTACTTTGTCTAACGTCCGCGGAAAATCGGACAACTGGACCGTTATCAACGAAAGGTTATATCACCGCTCATCAGAACTGTTTGctgtattcatcaggGATTATTTGCAAGAATTCGCCAGAGTTTGACGACTTGTTTGGTTTCTCTGTGGAAGACGTCCTTAAGGAGTTGAAAAGGGGAAACAGACTGATTTGTTACAGATGTAAGAAGAAGGGTGCCACGGTGGGATGTGAGGTGAAACGCTGTAAGAAGTCCTACCACTACCCCTGCGCTGTGCGAGATGGGGCCCAAAATGTCGATGACCACACAGAAGAGAAGTTTACGTTGTACTGTCTGAAGCATCATCTGGCGATAGCAGCAACCAATGAAACAGTGAGTAGAGCTTTGTCTACCAACGGTGATTCAGACACAACGATGAACAACAACGGAGAAACGTCACCCAAGTTGTTGAGGAAAGAGCTGAAAGGACTTGTTGATGCAGTGGCAGGACCCTCATCTTACCATAGTGACTCCAACGTGTCTAGTAAACGAcgacagaaacaaacacccaAGAGACGGTTGAGCTGCTCTAGCACACCGGAAGTGAAATCATCAAAAAAGTCCAGAAAGTGGAGCAAGAGTATTCAGAACGATTTCTCAAACTCAGACGGAGTTGTGAATGGAATTGACATGGAGTTAGCCCCTTTGGAGTCTGATCTAGAAGACAGTGTGTTCTCTGAACACAGAAATCATGCTGAGGCTCTCACCAGAGGATGTCAGCCAGAACCTGAACACAGAGACGATAGCGATGGGGACCATACAGTCATAGACTCATCTCAGAGTCTGTTGCTGCCTGTGATGCTGTGTGGTGTGTCTGAAGAACCCTCTCAGGACACAAACCTCGCAGtgtgcAGCTCTCAGCCGTGTTCTGCGGCTAGTCCTGGTTCACCTGTCCTCTCTGGTCGACAGGGCAGCTCTCTCACACTTGGTCCCATCTCATCTGTCCACTCTGGTCGACAGGGCAGCTCTCTCACACTTGGTCCCATCTCATCTGTCCACTCTGGTCCACTCAATGTCACCAACACACCTACTCGTACCAGTCCACCAGTCTCACCTGTCCCGCCTGATTACTGTTTCACCCCTGTGTCCTCTCCACACTCTGTATCCAATCGTCCCCTGGCTGGGCCCGGAGGCCTGGGTTCACCTATTGGTTCTGGCTCTGACTCTGCAGCCAGCAGAGTGTTCTGGAGAAGGTGTAACGAAGCAGGCTGTACACAGTCCATCTTCACCACCTTCTTTTCTGACATGGTCAGCATCTCCAATAGGATCCTGTCGGATAAGGCCAGTCAGGAGGATTATGATCTCTCTCTGAGAGTGATGGAGGCTTCTGGAAAATTATCACAGATGCTCtcagagcaggagagagagtTTAAGAAGAAGCAAATGGAGTTACAGAGCGCTACGGCAGCCATACGGGATGCCAGGTCAGCCCTGAAGAGATAAGCAGCCCTGCCAGGTCAACTACAACCCCCATAATCCACCTTCCCTCATTCAGTTCATTGGCATCACAAGATTTTATGGGGTGCATTATGCAGCCATATTGAGAATTTGATTTCACAATAGTTTTCACGTAGATCCACTTTCTTACCTTGTCAATATTATAATCCCCCCCAAAAAgtactgttgttgtttatactgtatgttcaaaCTCCGAGACCGAGAACCAATTATGAAACAAGAGGCTGCCATTTTGCTTGCCAGTAACAAAGGATGTTTTACCtttaaacaatatatatttttatgaatAGATCCCAAAAATGGTTGCTATTGTGTTGATAgcaagtatacaaaacattaagaacaccttctctttccatgccatagactgaccaggtgaatccaggtgaaagctataatcccttattgatgtcacttgttaaatccacttcaatcagtgtagatgaaggggaggagaccagttaaagaaggatgttttaGCCttgtgacatggattgtgtatgtgtgccattcagagggtgaatggacatgGCAaacgatttaagtgcctttaaacgggtAACCACCCAAATGACAGCCAGCCAATCatactggtttgtgtcaagaactgccacattgctgggtttttcacactcaaaacactttcccgtgtgtatcaagaatggtcaaccacccaaaggacagcCAGCTTTACACTACTatggagtcaatatgggccaacatccctgtgaaactcttttgacaccttgtagagtccatgccctgatgaattgaggctgttctgagagcaaaggggggtgcaactcaatattgtgTTCCAAATGTTTAGTGTACTCAGCGTATATTTGTATGTGAAATTGTTGCATTGCGTATTACCTCAAGGCATTCATTTCAATCATTTTTATATCCCGGACTGAAATTTGACATCTTCTGTACCTAGAACTTCTTATAATCTACATGATTAGGGTTTAGAGTTATTCCTAAATCCTATGAGTAGGAACAACTTGCATGTGTCTAATTGCTCATCCACTTCTTTTAACTGCACTGTTACATGTTTTCACACTTTTTATTCATTCGGTAATAAATGAAGAACCAAACTTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU333480 lncRNA downstream 6214 71979801 ~ 71980106 (-) True G294042
TU333451 lncRNA downstream 40877 71945190 ~ 71945443 (-) True G294015
TU333424 lncRNA downstream 41788 71926065 ~ 71944532 (-) True G293990
TU333448 lncRNA downstream 61030 71925077 ~ 71925290 (-) True G294012
TU333447 lncRNA downstream 62021 71924064 ~ 71924299 (-) True G294011
TU333483 lncRNA upstream 20191 72017075 ~ 72018622 (-) True G294045
TU333427 lncRNA upstream 118613 72115497 ~ 72118615 (-) True G293991
TU333535 lncRNA upstream 162091 72158975 ~ 72159261 (-) True G294093
TU333537 lncRNA upstream 167427 72164311 ~ 72165605 (-) True G294095
TU333538 lncRNA upstream 169222 72166106 ~ 72166337 (-) True G294096
XM_036964604.1 mRNA downstream 7006 71977813 ~ 71979314 (-) True LOC110505427
XM_021597903.2 mRNA downstream 49287 71932421 ~ 71937033 (-) True trim13
XM_021597900.2 mRNA downstream 50391 71932421 ~ 71935929 (-) False trim13
XM_021597901.2 mRNA downstream 51143 71932421 ~ 71935177 (-) False trim13
XM_021597899.2 mRNA downstream 201307 71774030 ~ 71785013 (-) True rnaseh2b
XM_021597915.2 mRNA upstream 470 71997354 ~ 72003306 (-) False LOC110520527
XM_021597919.2 mRNA upstream 470 71997354 ~ 72003578 (-) False LOC110520527
XM_021597914.2 mRNA upstream 470 71997354 ~ 72003763 (-) False LOC110520527
XM_021597917.2 mRNA upstream 470 71997354 ~ 72004221 (-) False LOC110520527
XM_021597918.2 mRNA upstream 470 71997354 ~ 72004993 (-) False LOC110520527
TU333405 other downstream 82412 71903314 ~ 71903908 (-) True G293984
TU332200 other downstream 946168 71027619 ~ 71040152 (-) True G292919
TU332000 other downstream 1265729 70720036 ~ 70720591 (-) True G292753
TU331092 other downstream 1878370 70107540 ~ 70107950 (-) True G291977
TU330998 other downstream 1989715 69980346 ~ 69996605 (-) True G291901
TU333434 other upstream 176165 72173049 ~ 72206798 (-) True LOC110504660
TU333986 other upstream 574365 72571249 ~ 72575432 (-) True G294451
TU334284 other upstream 778523 72775407 ~ 72776607 (-) True G294697
TU334351 other upstream 879455 72876339 ~ 72880854 (-) True LOC110520539
TU335813 other upstream 1575408 73572292 ~ 73572911 (-) True G296011

Expression Profile