RNA id: XR_005051371.1


Basic Information

Item Value
RNA id XR_005051371.1
length 2042
RNA type mRNA
GC content 0.43
exon number 9
gene id LOC110520527
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 71997354 ~ 72005789 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGCACTTCCAGAGTAGGCGTTCGGGGGGCACGCTAGACAGCTAATTAGCACCGTTCTCCGTTAAAGTGCTGTAACATGGCGATATGCCCGTGGGGGGACACTACCCTATACATTTGTATCAATTCAACTTTTTGTTTTCTAGCTGATAAAGATAAtgtccttatgcttccaaaactgTACCACATGTGAtgcgtgttaatgttcagaccagGCATCTGGGCTCTTAAAACTCCCCCTACAAAATAAGCCTTTGTCCAATGACTAGTGTAATATAATGCAACTGAGAGTCAAGGGCTAATAGAGCTCTAGATCAACCAAAAAGTGCTCAAATTAATACTGTAAAGTGTGTGTATTGAATCTTATCGGGTTTTGTATTGCTTGTAAATGTAATTCTAGAATGCGTATAGAAGCCTACAGCTAAACTATTATTCGCTACGGTAGTTTACATCACATGCAGCGCGCAGACACAGTGAAAACAACCCACAGGATAACCCTACCCGCACAGCCAGAGAAGACCGAAAAATGGAAAGCAAAAAACATACCACAGAAAACCAGAATTTGACCCAAAAGATAAAAAATAGGGAGCTCAGAATCGTGAAAAACAGGGCACGAGTTAAATCAAATGTATGGGATCATTTTGGAGTAATCGTTAACGCTGACAAACAACATGTGGATGGATTCGCAGCATGCAAAAAGTGCAAGCGGGTGTTAGCCTATGACAGCCATAGAACAGGCACTTCCAGCTTGAAAAAACACATTGAGAAATGCACGTCGTTGAAGTACAGCAAAAGAGAAGCTGCAATAAAGGAAAAGACGCTGTCCAAGAAGAGCACACATGAGGATGAGGAGCCACACCCTAAAAGAGGGATGTCAAAGCAAGAACCCAATACTTTAGAGGTAGCTTTGACAGAAGGTGGAGCTCCCGAGCAGTTTGAGTTTCAGTATGGACTTGAGGGACCAGCATTTGAGAATGGGGAGTCCTCCAAGAGCCATCTGTCCATCATCAAAGTAGAACAACTGGACTCCCTCCTCCCAGACCAAACAGACTCCAGCTGTGGTTCAGGGTCACCTGGGGATTCGGGGCCTCCTGGCTCATCTGGTTCTGGGTCCAATACTAGTCTGGCTTCACATTTTTTCAAGAAGTGCCACCAGGCAGGCTGCACACAATTCATCTTCTCTGAGTTCGCCTCCCGCCTCAGCATCATCACTGAGAGGATTGCATCCCAGCAGGCCAGCGAGGAAGATTTCAACCTCACCCTGAAAGTGCTGGAGGCCTCTGGGATGCTGCCAGAGATCTTTACCAAAAGAGATCAAGAAATGGAGAAGAGACTGAgggagctacagagagagactgtagcGGTGAGGACTGCCAGGTCTGCAATGAGAGATGCTTGCGTCATGAGCTTCACCTCATGACGGAGCACCGCTGAATATCAAAGCAGTTTTATAAGGTGTTATAACCAGGGCCTGGGTTTTCTGACAACTTGACTGAACTAGGAAGGTATAGGACCTGGAGTTTTCCCTGGTCCAATCCCCTCGTCAGGAAAAACAGGTCCTCCTTTTAACCAAAATGTAAATATTTCAAACCTTTTGTATTTGACATTTTTCTACCCGTGTTCAAACTTGAACTCTGACATTTGACTCTATCTGAACTGACATTTGAATGCAGTTTTTCACCCTGGCCACTAACTTGAGTGGCATGTTATACCTTAAATTGGTAATATAATCTTTTGACAGACATTGGTTCTGAGGTTATTGGTGATGTTTTTATGTTAGTAAGTGATCCTTAGTCTACCcctctgtactgtatgttatatgCTCACTAACCCTTAACAGACTTACTATATCCTAATATACTGAATGTGCAAATTAGTCTATTTTGTGACGGTTACTATGTCCACTAGTACTATAAGAAATGATTTAGAATACACTAATATAGTATACTTGAGAGTAAAGTTGAGACCTGTGACGTTCTGAGAATGAATTAAACTTATGTAAATGGTTTGTGATTATTTCATATAAAAAAATGTCTTGAACTTGa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU333480 lncRNA downstream 17248 71979801 ~ 71980106 (-) True G294042
TU333451 lncRNA downstream 51911 71945190 ~ 71945443 (-) True G294015
TU333424 lncRNA downstream 52822 71926065 ~ 71944532 (-) True G293990
TU333448 lncRNA downstream 72064 71925077 ~ 71925290 (-) True G294012
TU333447 lncRNA downstream 73055 71924064 ~ 71924299 (-) True G294011
TU333483 lncRNA upstream 11287 72017075 ~ 72018622 (-) True G294045
TU333427 lncRNA upstream 109709 72115497 ~ 72118615 (-) True G293991
TU333535 lncRNA upstream 153187 72158975 ~ 72159261 (-) True G294093
TU333537 lncRNA upstream 158523 72164311 ~ 72165605 (-) True G294095
TU333538 lncRNA upstream 160318 72166106 ~ 72166337 (-) True G294096
XM_021597909.2 mRNA downstream 470 71986320 ~ 71996884 (-) True LOC110520524
XM_021597911.2 mRNA downstream 472 71986320 ~ 71996882 (-) False LOC110520524
XM_021597910.2 mRNA downstream 475 71986320 ~ 71996879 (-) False LOC110520524
XM_021597908.2 mRNA downstream 479 71986320 ~ 71996875 (-) False LOC110520524
XM_036975078.1 mRNA downstream 1803 71986320 ~ 71995551 (-) False LOC110520524
XM_036975081.1 mRNA upstream 4907 72010695 ~ 72114512 (-) False LOC110520523
XM_036975082.1 mRNA upstream 4907 72010695 ~ 72114512 (-) False LOC110520523
XM_036975083.1 mRNA upstream 4907 72010695 ~ 72114512 (-) False LOC110520523
XM_036975080.1 mRNA upstream 4907 72010695 ~ 72114513 (-) False LOC110520523
XM_036975084.1 mRNA upstream 4907 72010695 ~ 72114513 (-) False LOC110520523
TU333405 other downstream 93446 71903314 ~ 71903908 (-) True G293984
TU332200 other downstream 957202 71027619 ~ 71040152 (-) True G292919
TU332000 other downstream 1276763 70720036 ~ 70720591 (-) True G292753
TU331092 other downstream 1889404 70107540 ~ 70107950 (-) True G291977
TU330998 other downstream 2000749 69980346 ~ 69996605 (-) True G291901
TU333434 other upstream 167261 72173049 ~ 72206798 (-) True LOC110504660
TU333986 other upstream 565461 72571249 ~ 72575432 (-) True G294451
TU334284 other upstream 769619 72775407 ~ 72776607 (-) True G294697
TU334351 other upstream 870551 72876339 ~ 72880854 (-) True LOC110520539
TU335813 other upstream 1566504 73572292 ~ 73572911 (-) True G296011

Expression Profile