RNA id: XM_036975085.1


Basic Information

Item Value
RNA id XM_036975085.1
length 6505
RNA type mRNA
GC content 0.49
exon number 30
gene id LOC110520523
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 72010695 ~ 72114513 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtctctttccctctctctgtctccctccctctctctttcccactctgtctccctccctgtgtgtgtgtgtgtgtgtgcgtctgcaaAAATTGGACATGCCTGCAatccctcctcttcactcctctctAGGTCTGCATGCGCATGTTGCTACTGAAGGTTGCATGCGTACATGTTCagtgtcctcccctcctcctttcctccttcccttctccaCTGCTGGCATCCCCCACTCTGCATCTCTCCATCAGTGCAGCCGGGGACGTCTGCATCTATCACAGCTTCAGcatcctccccatcccctctctgcaGCCagcatcctctcttctctctgaaaCATCCCTtgcttctctctcctttctgcagcatctctcactccatccacacCATCTGCAGTGTGAGTCAGCCAGCCAGGCACACCTCTcatttctttctccccctccgtAGAATCCTTACCCTGGGCTAGTAACTCTGCAGTCTCCCCCTCTTGCCTCCTCTCCCTTTGGCTAAGCAGCTGCGCCagtccccctcactccctcctccacGGCATCGGCTGTTTGGAGCAccagacatacacacaggcagGCTCCATCTATCCCCAGCCACGGAGTCCCTTCTCTGGGTAGCCGGGCTCCCGTTCCCCCACCTGAGGATGATGCTGTGGATGAAGACGGAGGAGATGGCCCTTGGAACGATGCTAGAAAGACTCAGACTGGTCATCCAAAATGTTGaTGAGATCATGCAGCAGGAGAACAGCCCCCTCTGTGCCATCGACATCACCCCTGACCTTAGGAAGAAGTTTGCCTTCCTGTTAGGGGGCCGAGGGCAGAACGGCAGCCCCATCATCGTGTTCCCAGAGTTCTCTGCTTTCGGAGAGATTCAAGAGAGGGAGTTCCACAACGTGCTCACTTACTTGACCAACGTTCCCAGTCTGTCTGCAGCAGGAGTGGGTTTCATTCTGGTCATTGACCGAAGGCAGGACCGATGGGCTGCCGTCAAGGGGACCCTGCTCCGCATCGCAggttcATTCCCAGGGAACCTGCAGTTGGTTCTGGTATTGAGGCCCACCACATTATTCCAGAGGACTCTATCAGACATCCTGTTCAAGTTCAACAGGGATGAGTTCAAGATGAAGGTGCCGGTGATTATGTTGAGTTCTGTGACTGAGCTTCACTCCTACATAGACCAGACACAATTGACTACTGAGCTGGGAGGAACGCAGGAGTACTGCCACGAGCAGTGGATCTCACACCGTACCGACATGGAGGGCTTTGCTTTGATGGTGAAGAGAACAGCTCAGATCCTGCAGTCGTTTGGGACAGAGCTAGCAGAGACTGAACTACCCAATGACATCCAGGCTACTGCAAACTTACTGAGATCACACACTGACAAGAAAGACAAGATGAagGAGGATCTACATGTGGCTCTAGGACAGGGCAGCAGACTGTTGGAGAGTATTAATGAGCCAGTGGTCAGAGATCCCGATCACAACAGGAACCAGGGTGAACTGGAGAACCTGTCCACCGTACAGAGaCTGTTGTCCCAGTTGGATGAGACCGAGCGGGCGTGTGATGAGTTCTGGGGGACACACCAGGCCAAGCTGGAGCAATGTCTGCAGCTCCGCCACTTTGAACACAACTTCAGAGAGATGAGATGTCTGCTGGACCAGGTGGCAGAGAGATTGACAGCTTTCTCAGAGGTGGGAATTAACCCTGCCCATGCTGATCACATCTTCTGCGACCTGAACAGCCACGAGGCGAGAGTCTTAgaggtATTGGACGAAGCCCAGGCTTTGGCCCGTGAGGGTGACGAGTTGATCCAGAGCTCTCACTACGCTGAGGACTCCATCCAGCCCAAATGCAGCGAGCTCCGAGCCGTGAGCAAGGAACTTAGTTCCACCCTGAGAGCAAGGAAAGATCACCTACTCAGAGCTATGGAACTACACCACAAtctggagagggctgcTAAGTGGTGTGGTGATGGCCTCTACCTGCTGGCCTCCCAGCCCGTGGACAAGTGTCAGTCACATGAAGGGGCGGAGTCAGCGCTGCAGGAGATGGAGCGTTACCTAGATACGGCGGGACAGAACAAACTAACTGATCCTAGCTCCATCTACAGTGATTACAAGACAGTGCTCAACCAGGACTTCAGGGACCAAATAGAGAAAGTCTTTCAGAAACAGGTATCCGTGCAGGAGATGTTTGAGAAGAGGATGGTCAGTCTGAAGAAGCTGGCAGCCAAACAGACCAGGCCAGTCCAGCCTGTGGCCCCAAGGCCTGAAGCCTTCATCAAGTCCCCACTCTCCTCGCCAGCAAAGAGAGTGCTGGAGAAGAGTTGCTCAGAGGGAGACTCTGTGAATGGGGTCAGCAGTGGAACAGTGGAGGGCCAGCTACAGAGCAGCAGAAGTACCTCACTGTCAGAGGAGGACGAGAACCTGGCCATCCTCAGAAAACATGTAATGAATGAGCTACTGGAGACAGAAAGGGGGTACGTGGAGGAACTGCACTGTGTCCTACAGGGCTATGCCTCAGAGATGGACAATCCAGCCATGGCCAGCCTCATGCCCGCTCCTCTGCAGAACAAGAAAGATGTGCTGTTTGGCAACATGCCAGAGATCTACACCTTCCACAAGAGGACCTTTCTGAGGGAGTTAGAAGAGTACCAAGGCTGCCCGGAACTTGTGGGTCGTTGTTTTCTGCTGAGGatGACAGACCTGCAGATCTATGAGAAGTATTGTCAGAATAAACCTCGCTCTGAGAGCTTGTGGAGACAGTGCTCCGACTGCACCTTCTTCCAGGAATGTCAGAAGAAGCTGGAACATAAACTGGGCTTGGATTCCTATCTCCTGAAACCGGTCCAGAGGATCACCAAATACCAGCTCCTGTTGAAGGAGCTGCTAAAGTACAGTAAGGGCTGTGAGGGGTCAGAGGCCCTGCAGGAGGCGCTCACCTCTATCCTGGGAATCTTGAAGGCTGTCAATGACTCCATGCACCTCATTGCTATCACTGGATACGATGGTCACCTGGGTGACCTGGGCCGGCTGCTGATGCAGGGGTCATTCAGCGTGTGGACGGAACACAAGAAAGGTCACGCCAAGGTCAAGGACATGGCCCGCTTCAAGCCTATGCAGAGACACCTGTTCCTGCACGAGAAAGCCCTGCTCTTCTGTAAGAGACGGGAGGAGAACGGGGAAGGCTATGAGAAAGCCCCCTCCTACAGCTTCAAACAGTCCCTTagtATGAGTGCTGTGGGCATCACTGAGAACGCCAAGGGTGACAACAAGAAGTTTGAGGTCTGGTGCAACTCACGGGAGGAGGTGTACATTGTGCAGGCCCCGACGACTGAGGTGAAAACGACGTGGGTGAACGAGATCCGGAAGGTTCTGACAACACAGCTGGAGGCCTACAGAGATCTCCCTGCATGTCTTCCAGAAGCCAGCCAACAGAGGTCGTCAGACGGACTGTTCCAGTTCCCTCCTACCGCTGGAGAACCTGTCAGCCTCGGTTCAtttagaagaggggagaggagcatGAAGGTGAAGAAGGGAGAACCCAGCAGCCCCGACGCTAACTCCTCCCCAATAACCAaagGATGGACCAAGGGCTCTCTCTCATTGGACGCCAATGAGGAGAATGATGGGTACTCTAGCACTGAAGAGCCCCTAACCTCCGACCCTGAGGACGAGGGGGGAAAGAAACTGTGTGCAGGGAAGTACACAGTGGTGTCTGACTATGAGAAGTGCAGCACCCAGGATCTGTCAGTCAAGAGTGGTGAAACAGTTCAACTGATCAAGGAGGGAGAAGATGGCCAGTGgttTGTGAAGAATCTGAAGACTAAGCAGGAGGGCTGGGTGGCTGCTGCCAACCTTTACACCCTGATTGGAGAGTCCACGTCCTGCCAGTCTCTCACCAGCTCAGAGGGCAGTGGCTCAGGGAACCTCAGCACTTCATCCAGCTGCTGTGAGACCAACACCAGCTCCTCTGACATCAAGCCCTGAACCCTTCCCTGGCCACATCAGGCCGCCCCTGGTCTCCGGAGCCGAACGCTACAGCACCAGATGGTGGCTCCCCCAACaaagcagtactttctcccccaCCCAAAACCCAACTTTGCCTCTCCTTACCCAGAGGCAAGCCCCTGGATTAGGATGCTGGTCAGCCACTTCAAGAAAATGCCAACTAATGCCAATGTTCCAGTGACCAGTCTATAGATAGTAGTGTCATTGATTAGAGAATGGATCTGGTGCCCTGGTGTAATTGTAGAGACACAGTGCAGTGTTTGTAGAAAGAAGCTACATTcatccatctatccacccatccACGGGATGAGCAAGTGGAGTATGAGGTCTAGGATTGATAGAGAGTGAACTGTTCCTAGATCTGACCGTCAGGTGTGCAAGCAGACCTGGGGCAGGCTAATATCAATGGCACTACGGCAGACAAAATGCTATGGACAAGCTGGAACCTGGCATAACCAATAGAATTTGAATAGCATTCTATGAATCTGATCAGGTGTCAGTGATGACATGGATCGTGCTGACCGTCTTGTTGTACTGTAGGCCTGTGTCACTGTTATAATTCTGTTGGTCCACATCATGGTACCTTTGACTGTCTAGAAATAGACAAGAGTCTTCATATTTTTCAAATAGAAAGTtaatgtaaataaaaaaagattATAAATGCAATGAATGTAAAGTATACCTTGTTTAGCTTTTCAGATTGTTGCTCGATGAGTGTTACCAGTCACCTCAAACATGTGACCATGGAAGTAACCAGTATGACCTATGGTAGGCCTATGACTATCTTATTGCCTGTTGGACAGTGAGGGGTAACTGTGTATTTGAAAGCTGAGGGATGTGAATGACTAGTTATGTACTTTGATAAAGATGTTATTCTACATATTtatatctctgtaatgtaatctctctctactctttctatCTTGCTTGGCCTTCCACCCCCTTGTCCTCTTAATTAGCTTACCCTGTCCTACAACATTAGTTTTGTATGACTcagaccacaggaggctgctgaggggaggactacTCATAAAAAGGCCTGGAATGTAATGAATGGAATAGTATCAAATGCATGGAAACCATTTATTCAGTTCCAGCCATTACTTTGAAActtgtcctccccaattaaggtgcctccAACCTCCTGTGATTCCGACAGAGCAGTCACAGTATTCACTGTTGGTTGTCCTCGTCAAATAACTTTATGAGATCCCTTTTTCATCCACTCCACCGGCTGTCCAGTCACATGTATTAAACATGACTTGGGATATAGGCTGTCCAGTCACATGTGTTAAACATGACTTGGGATATAGGCTGTCCAGTCACATGTGTTAAACATGACTTGGGATATAGGCTGTCCAGTCACATGTATTAAACATGACTTGGGATATAGGCTGTCCAGTCACATGTATTAAACATGACTTGGGATACAGGCTGTCCAGTCACATGTGTTAAACATGACTTGGGATATAGGCTGTCCAGTCACATGTATTAAATATGACTTGGGATATAGGCTGTCCAGTCACATGTTAAACATGACTTGGGATATAGGCTGTCCAgtcacatgggttaaacatgacTTGGGATATAGGCTGTCCAGTCACGTGTTAAACATGACTTGGGATATAGGCTGTCCAGTCACGTGTTAAACATGACTTGGGATATAGGCTGTCCAGTCACATGTGTTAAACATGACTTGGGATATAGGCTGTCCAGTCACATGTATTAAACATGACTTGGGATATAGGCTGTCCAGTCACATGTGTTAAACATGACTTGGGATATAGGCTGTCCAGTCACGTGTGTTAAACATGACTTGGGATATAGGCTGTCCAGTCACATGTGTTAAACATGACTTGGGATATAGGCTGTCCAGTCACATGTGTTAAACATGACTTGGGATATAGGCTGTCCAGTCACATGTGTTAAACATGACTTGGGATATAGGCTGTCCAGTCACATGTGTTAAACATGACTTGGGATATAGGCTGTCCAGTCACATGTGTTAAACATGACTTGGGATATAGGCTGTCCAGTCACATGTGTTAAACATGACTTGGGATATAGGCTGTCCAGTCACATGTGTTAAACATGACTTGGGATATAGGCTGTCCAGTCACATGTGTTAAACATGACTTGGGATATAGGCTGTCCAGTCACATGTGTTAAACATGACTTGAAATATAGGCTGTCCAGTCACATGTGTTAAACATGACTTGGGATATAGGCTGTCCAGTCACATGTTAAACATGACTTTGGATGTATGCTAGTCATTTTACAGGCATTTCTCCATGTGTACTGTGAACTTTGCTCCTTTTGTTAATAACTCAGTATCCAGTATATAGTCTTAAATTATTTATTGCTTTACAATCATTTATAAAGATATTGTTTATTACCTCACTATTTTCTTTAAGAAATCAGAAATTCTGTCAGCATTGTCTGTTTTTTTGTATTAAAAAGGACTTTGTGTCAACTAATGACGACCCTAAA

Function

GO: NA

KEGG:

id description
K20685 MCF2, ARHGEF14_21_22; guanine nucleotide exchange factor MCF2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU333480 lncRNA downstream 30589 71979801 ~ 71980106 (-) True G294042
TU333451 lncRNA downstream 65252 71945190 ~ 71945443 (-) True G294015
TU333424 lncRNA downstream 66163 71926065 ~ 71944532 (-) True G293990
TU333448 lncRNA downstream 85405 71925077 ~ 71925290 (-) True G294012
TU333447 lncRNA downstream 86396 71924064 ~ 71924299 (-) True G294011
TU333427 lncRNA upstream 984 72115497 ~ 72118615 (-) True G293991
TU333535 lncRNA upstream 44462 72158975 ~ 72159261 (-) True G294093
TU333537 lncRNA upstream 49798 72164311 ~ 72165605 (-) True G294095
TU333538 lncRNA upstream 51593 72166106 ~ 72166337 (-) True G294096
TU333539 lncRNA upstream 55189 72169702 ~ 72170033 (-) True G294097
XM_021597912.2 mRNA downstream 4906 71997354 ~ 72005789 (-) True LOC110520527
XR_005051371.1 mRNA downstream 4907 71997354 ~ 72005788 (-) False LOC110520527
XM_021597916.2 mRNA downstream 5698 71997354 ~ 72004997 (-) False LOC110520527
XM_021597918.2 mRNA downstream 5702 71997354 ~ 72004993 (-) False LOC110520527
XM_021597917.2 mRNA downstream 6474 71997354 ~ 72004221 (-) False LOC110520527
XM_036975087.1 mRNA upstream 7461 72121974 ~ 72206818 (-) False LOC110504660
XM_036975086.1 mRNA upstream 7462 72121975 ~ 72206818 (-) False LOC110504660
XM_036975088.1 mRNA upstream 7462 72121975 ~ 72206818 (-) False LOC110504660
XM_036975089.1 mRNA upstream 7462 72121975 ~ 72206818 (-) False LOC110504660
XM_036975090.1 mRNA upstream 149865 72264378 ~ 72266650 (-) True LOC110520529
TU333405 other downstream 106787 71903314 ~ 71903908 (-) True G293984
TU332200 other downstream 970543 71027619 ~ 71040152 (-) True G292919
TU332000 other downstream 1290104 70720036 ~ 70720591 (-) True G292753
TU331092 other downstream 1902745 70107540 ~ 70107950 (-) True G291977
TU330998 other downstream 2014090 69980346 ~ 69996605 (-) True G291901
TU333434 other upstream 58536 72173049 ~ 72206798 (-) True LOC110504660
TU333986 other upstream 456736 72571249 ~ 72575432 (-) True G294451
TU334284 other upstream 660894 72775407 ~ 72776607 (-) True G294697
TU334351 other upstream 761826 72876339 ~ 72880854 (-) True LOC110520539
TU335813 other upstream 1457779 73572292 ~ 73572911 (-) True G296011

Expression Profile