RNA id: TCONS_00029023


Basic Information

Item Value
RNA id TCONS_00029023
length 315
lncRNA type antisense
GC content 0.39
exon number 2
gene id XLOC_014688
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 18596786 ~ 18597326 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTAGGGCTTTGTCACTGTCTATTCCTGGATGGATGCGGCCTCTGCCTTCAGCCACCTGTAACATAATGAATGCTGCAAActgcaaaggaaaaaaaaaaaattaaatcagttgGCAATCAGCTGGTATATCATGCCCGAGAGCAACAGAGAATGGACTGCAAGATATTGTATTCTTCCTCAAACCTGCTTCCactatatatatgttttatgctCCTTTCTTAACAAAGAGCTTAATTATCATAGAGTGAATGTTTCTCCTAATCTCAATTTTTGacagagcccctattatgggtttttgagaatgacctcCCATGT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000160045

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029022 lncRNA downstream 110905 18484706 ~ 18485881 (-) True XLOC_014687
TCONS_00029019 lncRNA downstream 178385 18417603 ~ 18418401 (-) True XLOC_014685
TCONS_00029016 lncRNA downstream 231821 18363317 ~ 18364965 (-) True XLOC_014684
TCONS_00029015 lncRNA downstream 281465 18314328 ~ 18315321 (-) True XLOC_014683
TCONS_00029014 lncRNA downstream 283486 18311512 ~ 18313300 (-) True XLOC_014682
TCONS_00029029 lncRNA upstream 28108 18625434 ~ 18626514 (-) True XLOC_014689
TCONS_00030194 lncRNA upstream 146651 18743977 ~ 18753193 (-) True XLOC_014691
TCONS_00030195 lncRNA upstream 152279 18749605 ~ 18750318 (-) True XLOC_014692
TCONS_00030196 lncRNA upstream 234742 18832068 ~ 18841641 (-) False XLOC_014693
TCONS_00029773 lncRNA upstream 234742 18832068 ~ 18841798 (-) False XLOC_014693
TCONS_00029020 mRNA downstream 104229 18423378 ~ 18492557 (-) False XLOC_014686
TCONS_00029021 mRNA downstream 104264 18477055 ~ 18492522 (-) True XLOC_014686
TCONS_00029017 mRNA downstream 178023 18417093 ~ 18418763 (-) False XLOC_014685
TCONS_00029011 mRNA downstream 283405 18310386 ~ 18313381 (-) False XLOC_014682
TCONS_00029013 mRNA downstream 283461 18311211 ~ 18313325 (-) False XLOC_014682
TCONS_00029024 mRNA upstream 20282 18617608 ~ 18627025 (-) False XLOC_014689
TCONS_00029025 mRNA upstream 20430 18617756 ~ 18626952 (-) False XLOC_014689
TCONS_00029026 mRNA upstream 20431 18617757 ~ 18626515 (-) False XLOC_014689
TCONS_00029027 mRNA upstream 20431 18617757 ~ 18626973 (-) False XLOC_014689
TCONS_00029028 mRNA upstream 20431 18617757 ~ 18626992 (-) False XLOC_014689
TCONS_00029018 other downstream 178023 18417181 ~ 18418763 (-) False XLOC_014685
TCONS_00028989 other downstream 938613 17518061 ~ 17658173 (-) False XLOC_014675
TCONS_00028991 other downstream 1070051 17518733 ~ 17526735 (-) True XLOC_014675
TCONS_00028976 other downstream 1386051 17208245 ~ 17210735 (-) True XLOC_014667
TCONS_00028972 other downstream 1597044 16999627 ~ 16999742 (-) True XLOC_014664
TCONS_00029036 other upstream 237401 18834727 ~ 18834857 (-) True XLOC_014693
TCONS_00029037 other upstream 241085 18838411 ~ 18838541 (-) True XLOC_014694
TCONS_00029038 other upstream 244087 18841413 ~ 18841543 (-) True XLOC_014695
TCONS_00029041 other upstream 256731 18854057 ~ 18855476 (-) True XLOC_014696
TCONS_00029042 other upstream 264413 18861739 ~ 18861880 (-) True XLOC_014697

Expression Profile

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