RNA id: XM_036975092.1


Basic Information

Item Value
RNA id XM_036975092.1
length 5331
RNA type mRNA
GC content 0.48
exon number 19
gene id LOC110520531
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 72490848 ~ 72542128 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTGGACTGCTTGTGTCCTTCTTGCTGAAATGTCATTCGCTGCCGGATGAGTGGCTGTGCTGGCGGCAGCGATACGCATGTAGCACTATGCATGCAGTCTGCTGCTCGAACGCATCACAGTGAACTGCATCTGACAGCTTGCCAAGTTGGAGAACAAAAAAAAAGACCAAACACAGATGAGGGAAAAGCAGACCCGCTGGATTTCCACAAACCCAGAGTCACCTGCATCCACCCGATAgaggagaagggaaaggaaggagagatcTTTCGTTGTGGCCGTCCCCCTCAAAGCTCGCATGTATGAAAggataatgtttttgttttaatgTCCGGGATGATTGTGTACCAGGGGTAGATATTGAAATAgcaagaaaaaaaacacactgcTTCGTTGTATTTTTCACCGCGACTGGGGCCATGAATTCGGCAGAGCAGACGGTCACTTGGCTGATCACACTGGGGGTACTGGAATCGCCGAAAAAGAACATTTCGGATCCCGAGGCATTTCTCCAGACCTCCCTCAAAGATGGGGTTGTCTTGTGCAGACTGCTGGAGAGACTGAGCCCGGGCTCCACTGACAAAATCTACCAAGAACCGAAGAACGACGGCGACCGCTTGAGCAACATAAAGGAGTTTCTCAAAGGTTGCACTTCGTTTCGCGTCGAGCCGTTTGAGCCCAGTGATCTGCTCCTAGGACTGAACTTCTCCAAGATACTCAGCAGTCTGGTGGCTCTGAACAAAGTGACTGCAGACATTGGAGTGGACAGTGTGTGCACCCGTCACTCGGCGGACCATCGGATCAAGTCGTTTGAGTCTCTGGCCTCCCAGTCATCATTGGGCCGATCCTCCAAGCTGCTTCAGAACCACAGCCTGGACATGTCTGAGGGCAGCCGGACGCAGCTATTGGTCAAGGCTCGCTTCAACTTTGAGCAGACCAATGAGGACGAGCTGTCCTTCAACAAGAGTGATGTCATCAACGTGACACGCCAGGAGGAGGGCGGCTGGTGGGAGGGGAACCTCAACGGCAAGACCGGCTGGTTCCCTAGCAACTATGTCCGTGAGATTAAAGGCCGTGacAAACAAGTGTCTCCCAAATCTGGGACCCTGAAGAGTCCTCCAAAAGGCTTTGACACTACAGCCATCAGCAAGACCTACTACAACCTGgTGCTGCAGAACATtctagaaacagagacagaatatTCCAAGGACCTCCAGAGCCTTCTGACTAACTACCtcagatctctccagagcacAGAGAAactgaGCAGTACAGATGTGTATCTGATCCTGGGGAACCTGGAGGAGATCAGCACCTTCCAGCAGATGCTCGTCCAATCACTGGAGGAGTGCACCAAACTTCCAGAGAGCCAGCAGAAGGTAGGGAGCTTCTTCCTGAATCTCATGCCCCAGATGAAGGCTCTCTATGTGGGTTACTGCTCCAACCACCCCTCGGCAGTCAACGTGCTCACCCAGCACAGTGAGGAGCTGGGGGAGTTTATGGAGGGGAAAGGAGCCAGTAGTCCAGGTATCCTGACTCTGACCACAGGTCTCAGTAAACCCTTCATGAGGCTGGACACATACCCCACACTAACGAAGGAACTGGAAAGACacatggagGAGAGTCACCCCGACCGGCCAGACATCCAGAAGTGTATGACAACATTCAACAGCCTCTCGGCCCAGTGCCAggaggtgaggaagaggaaggagctgGAGCTGCAGATAGTGACTGAGTCCATCAGGCTGTGGGAGGGAGAGGACATCAGAACACTGGGCTCTGTTCTCTACACGAGTCAGGCTCTGGTTAACAGCCCAGGAGCAGAGgagaaGTTGGAGCGTTACCTCATGCTCTTCCCTCATGTCCTCCTCATGCTGTCTGCCACTCCAAGGATGAGTGGCTTTATATTCCAGGGGAAGCTGCCACTGTCTGGTATGACTGTGACCCCGCTAGAGGACAGTGAGACCCACAAAAACTCCTTTCAGCTTTCTGGCCGTCTATTTGAGTGTCTTCAGGTGGTGTGTAACAGTCAGCAGGACCTGCAGGACTGGGTGGACCATCTGACCCGGCAGACTAGACAAGCCACCGCCCCCAGCCACAAACCCCTCACGGTCCCCTGCCACAcgttGCCCTCCCACCCTTTGACTCCATCCCGTCATGCAGAGGGCTGTGCGATGACTGTGGCCCCAGCCTACCACACCCTGCCCCACCCCTCATCACACGGGGCTCCACACAGCACCATGATGTGGGGGCCTCTGGAGCCCCCCAACACCCCCAAACCCTGGAGCCTCAGCTGCCTGCGTCCTGCACCCCCCCTCAGGCCCTCTGCAGCACTCTGCTACAAGGAGGACCTTAGTAAGAGTCCTAAGAGTGTAAAGAAGCTCCTTCCTAAACGAAAGCCTGAGAGGAAACCGTCAGAAGAGGAGTCTGCCCTGAGGAAGAGTACAGCTGCTCTAGAGGAAGATGCTCAGATTCTGAAGGTGATAGAAGCTTACTGTACCAGCGCCAAGACCAGACAGACCCTCAATtccaCCTGGCAGGGTACTGACCTGATGCACAACCACGTCCTGGGGAACATGGAGCGGTCCAGCGTGGACTCTCCGGGCCACCGTAGCAGCGTGTCCCGACCTGACTTGACTGGCTCAGACTTGTCGGAGGACTCTGACTACGACTCTGTGTGGACGACCCACAGTTACAGGATGGGCTCAGCATCGTGTAAGAGCTGCATCTCTCACCAGAACTAAACCCCCAAAACTACCGTGGTCGTACCCTACCATACCGCGCGATACAGCACagcacatcacagcacagcacagcacagcacgtTCACCTCTTAACCTGTGGTCTAGAGGAAAACCAACCAGTTTTTAAgtctatttatttaatttatttgtaattattattgtgttcattttatttttatttgtgttTGTAATTTTTGGGAGATTGTACTCTCTTTGTTTGAAAATCTACCATGTTACCTTGACCTCTCTCTTTCCGTATTTGTCAGGTAGCTTGTGTTGGGCATCGTCTGGGGTTCTGTGTGTCTGATATTCAGATGTGGTTCAGGAAGGAAGGCATTCTATTGACCATGTTCTCTAACCTAGCTCCTTCTTCCACATATATTACAGCAGCAAATGTTGTGCTGACCTTTGACATTTCCAATGAATCGATATACTTTTGTTATTACTATGACTGCCTTAAGGCTTTTACCCCTGTTGCAGTACCCCCTGCAGTATTTCACACACAGGACACAGCATCGACAGTAGTACTTCTACGATATTGGTATTAATaggatattatatagtatatgAGATCGAAGTTCCCCTATAAACAGCATGCATGCTTCATTCCCAGGGTGACGATTTACACTCTTATCAGATTTTACCCCAATCCAAAATGCAGTACTTTTAAACTCAATATTCCCTCAACAGTTTAACAATGATATTCTCAAAAGCAGTACAACTTTAGGCCCTAAGCAGAGCCACAAGCCTGGCAGGTCCAGTTTCTATATCCCAAGAAGGAAACATTTGTTTGTATCCTTCAAAACATTACCATGCTCTTCCATGCGTTAGTAATAACTCTTCTCCTGAGAAAGTATTTCCTTATGCCACGTTAAGAATTCCCAGGGGACAGTTTTTCAAAGGTTATCTGGATTCCGGCTATTGGATCAGCTATTGGATAGGAATGGGGACACCCGTTCAATTTATTCTATTCctatgcatttaatcctatccgATAGCCAGATAGATAActtttgaaaaactgggcccAGTTTACTGTCCACTTAAAATTAGTCTGCTCTCTCCACAGAtcagtcttctctctctgcagatcagtcctctctctctgcagatcagtcctctctctctccgcagaTCAGTCTTCTCTTTCTGCAGATCAGTCTTCTCTCATCGCAGATCAgtcttctttctctctgcagaTCAGTCTTCTCTCTTCGCAGATCAgtcttctttctctctgcagaTCAGTCTTCTCTCTCCGCAGATcagtcttctctttctctgcagatcagtcttctctctctccgcagatcagccttctctctctccgcagATCAGTCCTCCATCTCCGCAGatcagccttctctctctccgcagATCAGTCCTCCATCTCCGCAGatcagtcttctctctctccgcaGATCAGTCCTCCATCTCCGCAGATCAGTCTTCTCTTTTCGCAtatcagtcttctctctctctgcagatcagtcttctctctctctctgcagatcagtcttctctctctctctgcagatcaGTCTTCTTTCTCCGCAGATCAGTCTACTCTCTTTCCTCAGATCAGTACTCTCTCTCCGcagatcagtcctctctctccacagttatCCTGACAATATATGGAATAAATGGCTTTGTTATTTATGTATTTCTAcaaataatttgttttattttacctaCATTATTTTGTATTACATATGTGATTAGTATTATTTTAATTTCACTGTGTATGTCAATGTTTACAACCAATTAGTGGAACATACAGTTAACCTCTCTCTACATGATGGTGAAATGGTATCAGCGTTTATACATTGAGCATGTGAGGTTGGGATTCATTTGTGCACAACCTCTGTGGTAGAGTATTGAAATGTGTTAACCATGAACAGTTTCTGTACCTCCTCTAACCAGTGTGTTTAACATCAAACTGAGTGGATGGTGTAGCCTAGTAATTACGCTTGCCATAGATATTGAGTGTCCCTGTACAGCTCATCCATACTGTAAATCTACAATGTCAGTGTTGAGGAAGTGTCAACCAAAAGAGAACTTAGTCTTGTGGGAGAGGTCATATGTGACATACTTATTCATCAACACAGATCAACATGAACTAAAATAAATGATCTCCTTTTTGTACATAGTGGATGTCAATAGAACAAAAAATAAGCCAAACAGTGGTTCTATCAGTATTTGAGCTAAGAATATGACTGTCCTCGTGTTGTGTCTTCTACTTTGTAACTGCAGTGTATTCTGTGGTTGGTCAGGTCATGTGACTGCAGTGTATTCTGTGGTTGGTCAGGTCATGTGACTGCAGTGTACTCTGTGGTTGGTCAGGTCATGTGACTGCAGTGTATTCTGTGGTTGGAAAAAAACTAAAGAAAAGCAGAAACTGAGAGTTGAAGTGACTGCTTTGTCCAACTGTGTCTTCTGTATGCTCCAATGATGTATAGGACCTATCCCACACCTGTGATCAAAATGTCCTACCTACCTATCTTACCTAcatacctactgtacctacctagaaacctacaatatatacagactgatgtacagtaccagtcaaatgtttggacatgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU333860 lncRNA downstream 164 72488680 ~ 72490684 (-) True G294361
TU333868 lncRNA downstream 4178 72486162 ~ 72486670 (-) True G294367
TU333867 lncRNA downstream 5059 72485488 ~ 72485789 (-) True G294366
TU333865 lncRNA downstream 5905 72484016 ~ 72484943 (-) True G294365
TU333863 lncRNA downstream 9443 72480846 ~ 72481405 (-) True G294363
TU334012 lncRNA upstream 67784 72609912 ~ 72611224 (-) True G294470
TU334016 lncRNA upstream 69838 72611966 ~ 72612375 (-) True G294472
TU334021 lncRNA upstream 81049 72623177 ~ 72623637 (-) True G294477
TU334036 lncRNA upstream 101114 72643242 ~ 72645495 (-) False G294491
TU334038 lncRNA upstream 101114 72643242 ~ 72645495 (-) False G294491
XM_036975090.1 mRNA downstream 224198 72264378 ~ 72266650 (-) True LOC110520529
XM_036975087.1 mRNA downstream 284030 72121974 ~ 72206818 (-) False LOC110504660
XM_036975086.1 mRNA downstream 284030 72121975 ~ 72206818 (-) False LOC110504660
XM_036975088.1 mRNA downstream 284030 72121975 ~ 72206818 (-) False LOC110504660
XM_036975089.1 mRNA downstream 284030 72121975 ~ 72206818 (-) False LOC110504660
LOC110504707 mRNA upstream 234588 72776716 ~ 72782874 (-) True LOC110504707
XM_036975102.1 mRNA upstream 249176 72791304 ~ 72825267 (-) False LOC110504714
XM_036975103.1 mRNA upstream 249176 72791304 ~ 72826819 (-) False LOC110504714
XM_036975101.1 mRNA upstream 249176 72791304 ~ 72834464 (-) False LOC110504714
XM_036975105.1 mRNA upstream 249176 72791304 ~ 72834464 (-) False LOC110504714
TU333434 other downstream 284050 72173049 ~ 72206798 (-) True LOC110504660
TU333405 other downstream 586940 71903314 ~ 71903908 (-) True G293984
TU332200 other downstream 1450696 71027619 ~ 71040152 (-) True G292919
TU332000 other downstream 1770257 70720036 ~ 70720591 (-) True G292753
TU331092 other downstream 2382898 70107540 ~ 70107950 (-) True G291977
TU333986 other upstream 29121 72571249 ~ 72575432 (-) True G294451
TU334284 other upstream 233279 72775407 ~ 72776607 (-) True G294697
TU334351 other upstream 334211 72876339 ~ 72880854 (-) True LOC110520539
TU335813 other upstream 1030164 73572292 ~ 73572911 (-) True G296011
TU335855 other upstream 1089910 73632038 ~ 73633036 (-) False G296043

Expression Profile