RNA id: XM_036975111.1


Basic Information

Item Value
RNA id XM_036975111.1
length 1290
RNA type mRNA
GC content 0.54
exon number 6
gene id fhl2a
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 73025288 ~ 73039384 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attTAAGAAAGTGAGGGGGGACATTCTCAAGTTCTCCTGTTTTTCCTTTGCCTCCTTATATGGTCAAACCATGACGGTGGAATCAGTGGGCAAGAGGGGAGTAGGTCAGAActcagaaagaaagagagagagaagaatgagagCAAGAGGAAAGTGGTGAGaagtgtagaggagagaggtatgCAGCGTCGTGTGCATGGGACACTGGGGACTTCCAGAGGCAGCCGGCCACACAcgcgtacaaacacacacacacacacacacacaggtcagcagAGTGACAGGCCAAACACAGAGAGGGATAACCAGAGGTTTATCAGGGGCTGGACTGCTGGCAGCTGCAAAGCTTGGGATTCCCGGTGCAAAGATGACAGAGCGCTATGACTGCCACTACTGTAAGGAATCCCTGTTCGGGAAGAAATACGTCCTGAGAGAGGAAAACCCATACTGTGTCAAATGCTACGAGAGCCTGTACTCAAACACCTGTGAGGACTGCAAGAAACCCATCGGCTGCAACACCAggGACCTTTCCTACAAGGACCGCCACTGGCACGAGGAGTGTTTCCAGTGCTTCCAGTGTAAACGCTCTCTGGTGGACAAGCCCTTCTCCACCAAGGATGACCAGCTGCTCTGCACTGAGTGCTACTCCAATGAGTACTCCTCCAAGTGCCACGAGTGCAAGAAGACCATCATGCCTGGCTCCAGGAAGATGGAGCATAAGGGTAACAGCTGGCATGAGACCTGCTTCACCTGCCAGCGTTGCCAGCAGCCCATCGGCACCAAGAGCTTCATCCCCAAGGAGAACCACAACTTCTGTGTGCCCTGCTACGAGAAACAGTTTGCCATGCAGTGTGTGCACTGCAAGAAGCCCATCACTACTGGCGGGGTGACCTATCGCGACCAACCCTGGCATAAGGACTGCTTCCTGTGCACCGGCTGCAAGCAGCAGCTGTCTGGCCAACGCTTCACCTCCCGTGACGACTTTGCCTACTGCCTCAACTGTTTCTGCAACCTGTATGCCAAGAAGTGTGCTTCCTGCACCACCCCCATCAGTGGTCTGGGTGGCAGTAAGTACATCTCGTTTGAAGAGCGCCAGTGGCACAACGACTGCTTCAACTGTAAGAAGTGCTCTGTCTCCCTGGTGGGCCGGGGTTTCCTCACCGAGCGTGACGACATCCTGTGCCCCGAGTGTGGCAAAGACATCTGACATCTGGCAGGCAGCGAGTGGCCGACACGTCTGATTGGAAATTAACGAAACAACCAGGAAGTAACAACGACCTATCAGAGCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU335499 lncRNA downstream 51483 72948008 ~ 72973805 (-) True G295738
TU335515 lncRNA downstream 59518 72964648 ~ 72965770 (-) True G295753
TU335512 lncRNA downstream 62614 72962307 ~ 72962674 (-) True G295750
TU334375 lncRNA downstream 132017 72893018 ~ 72893271 (-) True G294763
TU334374 lncRNA downstream 132751 72892337 ~ 72892537 (-) True G294762
TU335547 lncRNA upstream 11998 73046614 ~ 73049200 (-) True G295785
TU335559 lncRNA upstream 34132 73068748 ~ 73099306 (-) True G295797
TU335589 lncRNA upstream 86049 73120665 ~ 73123169 (-) False G295823
TU335590 lncRNA upstream 86049 73120665 ~ 73123169 (-) False G295823
TU335591 lncRNA upstream 86049 73120665 ~ 73123169 (-) False G295823
XM_036975108.1 mRNA downstream 144024 72870852 ~ 72881264 (-) False LOC110520539
XM_036975104.1 mRNA downstream 186835 72791304 ~ 72838453 (-) True LOC110504714
XM_036975101.1 mRNA downstream 190824 72791304 ~ 72834464 (-) False LOC110504714
XM_036975115.1 mRNA upstream 127900 73162516 ~ 73266610 (-) True uxs1
XM_036975116.1 mRNA upstream 303554 73338170 ~ 73490996 (-) False st6gal2a
XR_005051374.1 mRNA upstream 303554 73338170 ~ 73490996 (-) False st6gal2a
XM_036975117.1 mRNA upstream 303554 73338170 ~ 73505121 (-) True st6gal2a
XM_021584649.2 mRNA upstream 512583 73547199 ~ 73561315 (-) False LOC110505436
TU334351 other downstream 144434 72876339 ~ 72880854 (-) True LOC110520539
TU334284 other downstream 248681 72775407 ~ 72776607 (-) True G294697
TU333986 other downstream 449856 72571249 ~ 72575432 (-) True G294451
TU333434 other downstream 818490 72173049 ~ 72206798 (-) True LOC110504660
TU333405 other downstream 1121380 71903314 ~ 71903908 (-) True G293984
TU335813 other upstream 537676 73572292 ~ 73572911 (-) True G296011
TU335855 other upstream 597422 73632038 ~ 73633036 (-) False G296043
TU335849 other upstream 597688 73632304 ~ 73633036 (-) True G296043
TU335926 other upstream 738538 73773154 ~ 73775299 (-) False G296102
TU335928 other upstream 738538 73773154 ~ 73775299 (-) True G296102

Expression Profile