RNA id: XM_021584646.2



Basic Information


Item Value
RNA id XM_021584646.2
length 1198
RNA type mRNA
GC content 0.51
exon number 8
gene id LOC110505436
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 73547199 ~ 73561315 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TCTCGTGTGGAGCGTGTTCTCAGACGCTCAAGAGCATTTCCAGGATATTTCAGTTCACTGCTCAGTCGTGTGCAAGAACTATGGACAGCAAGGGGATTTTGTCTCTCACCCTTCTACTCCTCTTGTCACAGAgtcctgcctccctctctttgaCAGTGAGCACCAGTGAGGCCAAAATGGAGGTCCACGAGAACACagacgCTGTGCTGTCCTGTCAGTTCAAGACAGAGAAGGAGACTAACCCTCGTATTGAGTGGAAGAAGAAAGGGAAGGACATCCACTTTGTTTATTTCGATGGAAAATTCACCGGATCCTTTGCAGGTCGGGCCAAGATCGAGGGCGCAACGGTGACACTGCATGCCGTTACCCAGAAGGACTCTGGGTTGTATCGCTGTGAGGTCAGCGCACCAGCAGACCACACAAACCTAGGAGAGGTCAATGTCACCCTCAACGTACTGGTGCCCCCCCACACCCCGTTCTGTGAGGTGCCCAGCTCAGTGCTGTCTGGGACAAGTGTAGAGCTCCACTGTAAGGACAAACTCAGTGTGCCCCCGTCTACCTTCCTCTGGTATAAAGACAACAAGGCCCTGAGCGCCACACACACCCCTGACATCGTCtatagcatggacactgacacgGGAACACTGAATATTAAGAGTGTGTCCAAGGCCGACTCAGGCCAATACCGCTGTGAAGTCTCCAATCGCGTGGGGGCGTCCAAAAGCTCTGTGGCCCATCACATGAAGGTCATAGAATATCCGTTGAGCATGACGACATTGATAGCCGGAGCTGTAGGCCTCTTCCTGCTCATCCTCATATGCTGCCTGGATGTGTGTCTCCCATTGACAGGGCTGCTGCAAAATGGtccacctcctccccccaccAGAAATGTGAGTGTGTTGCCATTccctgttgttgttgatcaggAACGGTAATTATTCCTTGTACTGGCAGTATTAACTTAGTTGAGCAGTGGTCTTGTTTTAAATTGGACTGTTCTTGGAGCAGTTGTTGACCACACCAGTGTATTGATAAGCCTGAGTTGTTGAGTGAGTTGGTAATAATAGTAACCAGTCTAGTTAACTGATGGATACGCCTTTCCCTTTCTGCAGCCCAAGAACTACAAACACACCCAGTCCTTCATGATCTGAGGGtatagcacgcacacacacacacacataaacacacacacacacac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU335771 lncRNA downstream 68709 73476854 ~ 73478556 (-) True G295979
TU335652 lncRNA downstream 329453 73216943 ~ 73217812 (-) True G295865
TU335612 lncRNA downstream 407482 73133474 ~ 73139783 (-) True G295832
TU335601 lncRNA downstream 424096 73120665 ~ 73123169 (-) False G295823
TU335812 lncRNA upstream 9936 73571251 ~ 73571774 (-) True G296010
TU335814 lncRNA upstream 12335 73573650 ~ 73573923 (-) True G296012
TU335845 lncRNA upstream 66724 73628039 ~ 73628383 (-) True G296039
TU335848 lncRNA upstream 70344 73631659 ~ 73631961 (-) True G296042
TU335865 lncRNA upstream 98193 73659508 ~ 73660094 (-) True G296052
XM_036975117.1 mRNA downstream 42144 73338170 ~ 73505121 (-) True st6gal2a
XM_036975116.1 mRNA downstream 56269 73338170 ~ 73490996 (-) False st6gal2a
XR_005051374.1 mRNA downstream 56269 73338170 ~ 73490996 (-) False st6gal2a
XM_036975115.1 mRNA downstream 280655 73162516 ~ 73266610 (-) True uxs1
XM_036975112.1 mRNA downstream 507881 73025288 ~ 73039384 (-) True fhl2a
XM_021597942.2 mRNA upstream 30469 73591784 ~ 73597306 (-) True grk1a
XM_036975119.1 mRNA upstream 36127 73597442 ~ 73613774 (-) False LOC110520555
XM_036975118.1 mRNA upstream 36127 73597442 ~ 73613806 (-) False LOC110520555
XM_036975121.1 mRNA upstream 36127 73597442 ~ 73614417 (-) False LOC110520555
XM_036975122.1 mRNA upstream 36127 73597442 ~ 73614529 (-) False LOC110520555
TU334351 other downstream 666411 72876339 ~ 72880854 (-) True LOC110520539
TU334284 other downstream 770658 72775407 ~ 72776607 (-) True G294697
TU333986 other downstream 971833 72571249 ~ 72575432 (-) True G294451
TU333434 other downstream 1340467 72173049 ~ 72206798 (-) True LOC110504660
TU333405 other downstream 1643357 71903314 ~ 71903908 (-) True G293984
TU335813 other upstream 10977 73572292 ~ 73572911 (-) True G296011
TU335855 other upstream 70723 73632038 ~ 73633036 (-) False G296043
TU335849 other upstream 70989 73632304 ~ 73633036 (-) True G296043
TU335926 other upstream 211839 73773154 ~ 73775299 (-) False G296102
TU335928 other upstream 211839 73773154 ~ 73775299 (-) True G296102

Expression Profile