RNA id: XM_021597942.2


Basic Information

Item Value
RNA id XM_021597942.2
length 3927
RNA type mRNA
GC content 0.49
exon number 7
gene id grk1a
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 73591784 ~ 73597306 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCATTTTCCTCTGGGAAATCTGATGTGTTGACTTGCGCTCTAAAAAGCCTTGTTCACATTTGGTATTTTGATGTGACTCAAATCCTTTTTCCTGCAGTCaacagccaaaaagcacatggGATCAGATATTTCATGCCACATTTAAAACCACCTTTGTTGGTTTTTAGACAGTTTTggcatatcttgttgcttgctagctactctgttgacaattttgacaagaacatgtgttagttaactagcttgttaattgtttacaatCAAATTAGGGAATGTGCTGAAGGCTAGAGGGAGATATAAACATTTTGCTTTCACCTTTCTGATCCTTCCATATCTATGAAGGCCAGGGGCCATTCTGATGTTTCGTGAGGTGTCAATTTTAGACTCTGCgccttactccctccctcccttttctacTGTGCTGCTCCCTTGTGTCTTGTTCTTTAGATAACAGGTGCTGCTCTGGCCTCCATGACACAGTCTGAATACACCAGTCACAGATTGGGCTCTCACTCTCAGCCTGAGGTATTAGGGAGTTAGTGGATAAAGGCATTACTGTCTGAAAGGTGCTGAgccaggtgtgtgtgagagatacgGGTAAAGCGCTCGGGTCAGGAGGAGGATCTTGTGTCCTCTGTCCTGCTGCTGGCACGGCTCTCCTTTTCCTTTCTCTCCCGCTGTTCATCTTTCCTCTCATCATTCCTCTCTAATCCTCCCCTTTTACTgtttcactccctctttctcctctatcaCCTTTTATTCACACTTCAACATATTCTTCGTAATCTCTTTATCTCACACTATCCCTCCTTGCCCCCCGCTCGTCTTCACCATGCTCTCCCTCTGAGTGTCCTCGCTGTCGGCGacagcctctctccctccgttGCCATGGATTTGGGCAGCCTGACCACAGTGGTTGCCAACTCTGCCTACATAAGCGCCCGCGGAAGCTTCGATGGCTCCAACCCGGCAGCCTCGCGTGACAAGAAGTACCACGCCCGCCTCAAGCTGCCCCATATCACCGTGTGTGAGGGCCTCCAGGAAACCCTGGACCTAACCTTTCAGTCAGTCTGCGTGGAGCAGCCCATCGGCAAACGTCTGTTCCGCGAGTTCCTGGAGACGGCGCCCGAATACCACGGTCCTTGCCACTTGTGGCGGGACATCGAAGAGTACGACTTAGCCGAAGACACAGACCGGGCCCAGAAGGCATCTAGGATTGTCCAGCGTTACCTGGAATCCTCTGCTAAGCTCTACTGCCCCTTCCTGACCCCGGAGACCGTGACCCAGGTGAAGGAGGCACAGCAGGGGGCTGGGGACACCCTCTTTTCCCAGACACTGGTCTCGGTGCTGGGCTACCTCCAGGAAGTTCCCTACACCTTCTTCCTGGAGAGCATGTACCTGAAGAGGTTCCTGCAGTGGAAGTGGCTGGAGATGCAGCCCATGGACCAAGACTGGTTCCAGGACTTCCGTGTGCTTGGGAAGGGGGGTTTCGGAGAGGTGTCTGCCTGCCAGATGAAGGCCACGGGGAAACTGTACGCCTGCAAGAAGCTCAACAAGAAGAGGCTGAAGAAGAGGAAAGGCTATGAGGGGGCGATGGTGGAGAAGAGGATTCTTGCCAGGGTTCATAGTCGCTTCATCGTGTCACTGGCCTACGCTTTCCAGACCAAGGATGAGCTTTGCCTGGTTATGACCATCATGAATGGAGGAGACctgaagtacCACATCTATCTGGTGGATGAGAACAACCCAGGGTTTGAGGAGCCCAGAGCCTGTTTCTACGCAGCTCAGATCATCCAGGGCATGGAGCACCTGCACCAGAAGAGAATCATCTACAGAGACCTCAAACCTGAGAACGTGCTGCTGGACAATGAAGGTAACGTGCGTATCTCTGACCTGGGTCTGGCAGTGGAGCTGAAGGAAAACCAGACAAAGATCAAAGGCTATGCCGGAACTCCAGGGTTTATGGCCCCAGAGCTCCTGAAGGGGGAGAAGTATGACACCTCAGTGGACTATTTCACCCTAGGGGTCACATTGTTTGAGTTTATGGCCGCCAAGAACCCCTTCAGGGAACGCGGAGAGAAGGTTGAGAAGGAGGCACTAAAGGAGCGCATCATGACCGGGACAGTGGTCTACCCAGAGACATTCAGTGAGAACGCCAAGTCCATCTGCTCTGCGCTGCTGGAGAAACAGGTGGACAAGAGACTAGGTTTCAAGGACGGGACCTGTGACGAGATCAGGACACACCCCTTCTTCAGCGCCATCCACTGGACGAGACTGGATGCAGgCATCCTGCCCCCCCCGTTTGTCCCTGACTCCAAGGTGGTCTACGCCAAGGACCTGGATGACGTGGGGGAGTTCTCCTCGGTGAAGGGAGTGGGGCTGGACGACCCCGACCGCGTGTTCTTTGACGAGTTCTCCTCTGGGAACATTGCCATCCCCTGGCAGGAGGAGATGATTGAGACGGGGATCTATGGTGAGCTCAACGTGTGGGGACCCGCAGGCACCATACCCAACGACCTGCGCAGGGAGTCCATCTTGGAACAGCCCAAGTCATCCACCTGCTGCTTGGCGTGATTGTCTCTTTGGAAACGGAGGACGAAGAAGGGAGCTCAGACGTTCCGGATCAGACCAACCGTAGCTCTTTGAGGTTGTGTTTAGTACACGCGGAAGTGCTGCCAACTGAATATTTTTTTGAGCGCTTTACGTTTAGAGTAGAACAACGAGAGAAACTGTAAAAAAGAAGAAACAAACATACACCTCAAAGGGCATTGATGGGAAAACACCTGGACCCAGACAAACACTCAAGACAGTCCAGAACAGCAAATCAGGTTCTACACAATAACGTTGCCATGGAGATGGAACTCCTGAGTGGCATGGCATTCTGACTGTTCATTGGTTGAGATTGAGAGAGTGTTTCGCTGCTCTTAGAGTGAAACTGTTAGATGGACTTTGGACCTTTGTACTTCAGTTGCGCCCAGCAATAGATATTCTGTATTCTCAAAGCATACTGACAGATCATTTAGCAGCATCAATATatacgtgtgtgtgagtgagagaaaacGAGATGCTTTCTGATTCTGCTCACTATAACACTAGTGAAATGTGCTAAGAAACATGAAATCTTGCAGTTCTCGAAATATGTCAATATACACTGAATCTACcaaacatcaggaacaccttcccaatatttagttgcaccccccttgccctcagaacagccccaATTGAtcgggcatgaactctacaaggtgtcacagggatccacagggatgctggcccatgttgactccaatgcttctcacatttgtgtcaagttggctggatgtcctttggatggagGACCATTCTTGTTACATACGGGAAAAtgctgagcgtgaaaaacccagcagcgttgcggttcttgacaccaactggtgcgcctggcacatactaccataccctgttcaaaggcacttcaattttttgtcttgcccattcaccctctgaatggcacacatacacaatccttgtCTCAGTTGTCTCTAGgcgtaaaaatccttctttaacctgtctcctccccttcctctacactgatttgaagtggatttaacaggtaacATTAATAAGGGAAAGAGCACTAgttaatgttttgtgtactcagtGTAAGAGCTTACCTTCTTGAACTAGTCTGTTTTCATGTATAGTGGAAAAGGGTTTGGTTACCATTGTCATAAATGCAGGTGATACTGTCTCTAGTAGATgtctatgtgtatatatagtaacTTTCAGAATATCTGTGTTGATGCCAATGCAGACTATGCGTAAGTAGCGAGAAATGAACACATTTTTCACACTGTAGTGCAAAGCACATTTTATTTACAAAACATTTGTCAATGTATCAAATGTATGAAAAAACATTGGTAGATAAAATTGCATTTTGAAAAGTCA

Function

GO:

id name namespace
GO:0038032 termination of G protein-coupled receptor signaling pathway biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004703 G protein-coupled receptor kinase activity molecular_function

KEGG:

id description
K00909 GRK1_7; rhodopsin kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU335814 lncRNA downstream 17861 73573650 ~ 73573923 (-) True G296012
TU335812 lncRNA downstream 20010 73571251 ~ 73571774 (-) True G296010
TU335771 lncRNA downstream 113228 73476854 ~ 73478556 (-) True G295979
TU335652 lncRNA downstream 373972 73216943 ~ 73217812 (-) True G295865
TU335612 lncRNA downstream 452001 73133474 ~ 73139783 (-) True G295832
TU335845 lncRNA upstream 30733 73628039 ~ 73628383 (-) True G296039
TU335848 lncRNA upstream 34353 73631659 ~ 73631961 (-) True G296042
TU335865 lncRNA upstream 62202 73659508 ~ 73660094 (-) True G296052
TU335704 lncRNA upstream 64916 73662222 ~ 73667390 (-) True LOC110520558
TU335868 lncRNA upstream 90352 73687658 ~ 73688154 (-) True G296055
XM_021584649.2 mRNA downstream 30469 73547199 ~ 73561315 (-) False LOC110505436
XM_021584646.2 mRNA downstream 30469 73547265 ~ 73561315 (-) True LOC110505436
XM_036975117.1 mRNA downstream 86663 73338170 ~ 73505121 (-) True st6gal2a
XM_036975116.1 mRNA downstream 100788 73338170 ~ 73490996 (-) False st6gal2a
XR_005051374.1 mRNA downstream 100788 73338170 ~ 73490996 (-) False st6gal2a
XM_036975119.1 mRNA upstream 136 73597442 ~ 73613774 (-) False LOC110520555
XM_036975118.1 mRNA upstream 136 73597442 ~ 73613806 (-) False LOC110520555
XM_036975121.1 mRNA upstream 136 73597442 ~ 73614417 (-) False LOC110520555
XM_036975122.1 mRNA upstream 136 73597442 ~ 73614529 (-) False LOC110520555
XM_036975120.1 mRNA upstream 136 73597442 ~ 73614530 (-) True LOC110520555
TU335813 other downstream 18873 73572292 ~ 73572911 (-) True G296011
TU334351 other downstream 710930 72876339 ~ 72880854 (-) True LOC110520539
TU334284 other downstream 815177 72775407 ~ 72776607 (-) True G294697
TU333986 other downstream 1016352 72571249 ~ 72575432 (-) True G294451
TU333434 other downstream 1384986 72173049 ~ 72206798 (-) True LOC110504660
TU335855 other upstream 34732 73632038 ~ 73633036 (-) False G296043
TU335849 other upstream 34998 73632304 ~ 73633036 (-) True G296043
TU335926 other upstream 175848 73773154 ~ 73775299 (-) False G296102
TU335928 other upstream 175848 73773154 ~ 73775299 (-) True G296102
TU335922 other upstream 211176 73808482 ~ 73809596 (-) True G296100

Expression Profile