RNA id: XM_036975120.1


Basic Information

Item Value
RNA id XM_036975120.1
length 2379
RNA type mRNA
GC content 0.49
exon number 12
gene id LOC110520555
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 73597442 ~ 73614530 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCCGAAACATCAGATATTAGACACCGCCAAGATTGGTTTGAGAGAAAGGATGGAAAGTAATTGGTGACTTATCAGAGGAGGATAATGGCCAAAGATGTTGGTCTGATGGAAACCAATGGAGAATTGAAGGTTTTCATTGACCAGAATCGGAGTCCTAGTAAAGGTGTCCTGTCTCTGGTTGCTGTCCATCCTGTGTCAATCCCCATGGCTAAACAACTACTGCCTAAAACCCTGGGGCCATCCAATGTCAACATTGCTCCACACATGGTGATTGGTACGCCCCAGAGGCCCAGTGTTTCCAGTGCCATACTTGTGAACAGCCCTCAAACACCCAACTCCCAGTTCCTCACACAGAGCCAGCCAGCCGACGCGTCGCCATGGTCCTCGGGGAAGCGTGGTAAGAAGGGGGAGAAGAATGGCAAGGGCCTGAGACATTTCTCCATGAAGGTGTGTGAGAAGGTGCAGAAGAAAGGTGTAACCACCTACAACGAGGTGGCAGACGAGCTGGTGGCGGAGTTCAGCGCTGCAGACAACCACATCTCCCCCAACGACTCACATGTGTACGACCAGAAGAACATCCGACGGCGTGTGTATGACGCGCTCAACGTGCTCATGGCCATGAACATCATCTCTAAAGAGAAGAAAGAGATCAAGTGGATTGGTCTGCCTACCAACTCAGCCCAGGAGTGCCAGAACCTAGAGGTGGAGAGACAAAGGCGACTGGAGAGAATCAAGCAGAAGCAGTCACAACTCCAAGAACTCATATTACAGCAAATAGCCTTTAAGAACCTGGTGCAGCGGAACCGACAGACGGAACAGCAGGCCAACAGACCTCCGCCCCCCAACTCTCTCATCCACCTCcccttcatcatcatcaacaccagCAAGAAGACAGTCATCGACTGTAGCATCTCAAACGACaaGTTTGAGTACCTGTTTAACTTCGACAACATGTTTGAGATCCACGACGATATTGAGGTGCTGAAGCGCATGGGCATGGCCTGTGGCCTGGAGGTGGGCAAATGTTCCCCGGAGGACCTGAAGGTGGCACGCAGCCTGGTGCCCAAAGCCCTGGAGCCCTACGTCACAGAGATGGCCCAGGGCCCCATCAGTAACGTCTACATCACTGGAGGATCCTCCACCAACGGGCGGCGCCATCACGGCCAGGGCagtGACAGCGGTGCAGATGGTCCCCTGGCCTCCAGCTCTAATGACTCTCACTACAGCAGCTCCCGTGTTGAGACCCCCGTGTCGTACATGGGGGATGACGACGAGGAGGACGATTACGACGAGAACGACGATGAAGATTAACTTTCTGCCGCGCCAAGCCTCTCGAACaagcagtctgtctctctctctctctctctgagtatctctctctccctgagtatctctatctctctctctctgagtatctctctctccctgagtatTTCTCCCCCTCCgagtatctttctctctctctctgtaagggGCGTTGAAGAATGTTTTTCTGGGTATGAAGAGTGTGCAGACCTCTTCTCCTCAGAGGGGGTGGTCCTGAATCACATGCTGCACATTGGCTCTCTGGGAAGTGTAGTCTATGGCTTTGGCACTGTGCTGCAGCATTTCTCTGTCTATTATCACCCTCTTCTTGGCCAGCCACCTGCTGGAGAATAAAGGGAAAAGAAACATCTTCCAGACAACCCACTGCTGTTGGAGAATGTATAGTGTTCCTTGTGTGTGAAATAGTTAGCTTTGTTATGTTTTGATTTCTTTGGACAGACTCAATGGTGAACCACTGTTTCAAGATGGCTGCCAGTGCAACTGCCCCCAGACCGCTGGCTCAGAGACACTCACTGGATCCAAAATGTCCTGTTTAGTCGCCACAACGCCCTAAGAAAGTTTGGGACTGCATTTCGAAAGTGTGGACACTGTTCTGTTATCGCCCTCTTTTGTGGCATTGATATCAATGGGCTGGTGTGTTGGGCTAGCTTCCTCTCATTCTGTAGGCAGATGCTTTTCTGGTCCTTATTTGTTTAAGTTTTGGAGAGCGCCCTTCCACACCATGGTAGTGTTTACAAGTGACGGGCACGAGCGAGGAAAATAACTCCTACCCACGCTCCCCTATAGGAAAATGTTAAGCTTTGTGTTTGAATGATGTAAACTGATCCTATGAAGATTGTAGTTTATAACATCCTTTACAGGTCAGTGGCAGAAGGAAGACCTGGACATTATTGATGTATCTAAGATGTGGGTTGTATAGGTCTGTCTCCATGGACCCCCTTCGAAGATCTCCTCTTTTTTTTTAACTGAACAACATGTACTGACTCTTCCAAAATACCTTTTCTGTAATCTAATATAATTTTGTCAATTAAATATAGAGAATGTTTTAACAA

Function

GO: NA

KEGG:

id description
K04683 TFDP1; transcription factor Dp-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU335814 lncRNA downstream 23519 73573650 ~ 73573923 (-) True G296012
TU335812 lncRNA downstream 25668 73571251 ~ 73571774 (-) True G296010
TU335771 lncRNA downstream 118886 73476854 ~ 73478556 (-) True G295979
TU335652 lncRNA downstream 379630 73216943 ~ 73217812 (-) True G295865
TU335612 lncRNA downstream 457659 73133474 ~ 73139783 (-) True G295832
TU335845 lncRNA upstream 13509 73628039 ~ 73628383 (-) True G296039
TU335848 lncRNA upstream 17129 73631659 ~ 73631961 (-) True G296042
TU335865 lncRNA upstream 44978 73659508 ~ 73660094 (-) True G296052
TU335704 lncRNA upstream 47692 73662222 ~ 73667390 (-) True LOC110520558
TU335868 lncRNA upstream 73128 73687658 ~ 73688154 (-) True G296055
XM_021597942.2 mRNA downstream 136 73591784 ~ 73597306 (-) True grk1a
XM_021584649.2 mRNA downstream 36127 73547199 ~ 73561315 (-) False LOC110505436
XM_021584646.2 mRNA downstream 36127 73547265 ~ 73561315 (-) True LOC110505436
XM_036975117.1 mRNA downstream 92321 73338170 ~ 73505121 (-) True st6gal2a
XR_005051374.1 mRNA downstream 106446 73338170 ~ 73490996 (-) False st6gal2a
XM_036975124.1 mRNA upstream 27990 73642520 ~ 73651632 (-) True LOC110520557
XM_036975132.1 mRNA upstream 47466 73661996 ~ 73682161 (-) False LOC110520558
XM_036975148.1 mRNA upstream 47466 73661996 ~ 73682830 (-) False LOC110520558
XM_036975146.1 mRNA upstream 47466 73661996 ~ 73682833 (-) False LOC110520558
XM_036975134.1 mRNA upstream 47466 73661996 ~ 73682839 (-) False LOC110520558
TU335813 other downstream 24531 73572292 ~ 73572911 (-) True G296011
TU334351 other downstream 716588 72876339 ~ 72880854 (-) True LOC110520539
TU334284 other downstream 820835 72775407 ~ 72776607 (-) True G294697
TU333986 other downstream 1022010 72571249 ~ 72575432 (-) True G294451
TU333434 other downstream 1390644 72173049 ~ 72206798 (-) True LOC110504660
TU335855 other upstream 17508 73632038 ~ 73633036 (-) False G296043
TU335849 other upstream 17774 73632304 ~ 73633036 (-) True G296043
TU335926 other upstream 158624 73773154 ~ 73775299 (-) False G296102
TU335928 other upstream 158624 73773154 ~ 73775299 (-) True G296102
TU335922 other upstream 193952 73808482 ~ 73809596 (-) True G296100

Expression Profile