RNA id: XM_036975140.1


Basic Information

Item Value
RNA id XM_036975140.1
length 8750
RNA type mRNA
GC content 0.46
exon number 15
gene id LOC110520558
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 73661996 ~ 73697362 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGATTTCGGGTTAAATATTCAAAATGGCGGACGGAGGAGCAGCGAGTCAAGATGAGAGTTCAGGACCAGATTCTAGAATGAGTAATGCGTCAGGAACGAGTAAATGTGGAATGGAGAGTCAGAGTGAGGACGGCAACACAGAAATCCAAACGAATGGACTGGACTTTCAGAGGCAGACGGTTCAGACCACAAGCGCAATcaccaacgcacacacacaggctctcCTCCAACAGttGACCCTGTCTCCAGCgcagcagcagttgttgttgcaaCAGGCCCAGGCCCAGCTCCTAGCAGCAGCCATGCagcagcagtcagccagccagcagaGCAGCACTACGGGGGCCAGCATCTCTGCCTCTGCAGCCACCCCTATCACACAACTGCCCCTGTCCCAGCCCATCCAGATCACCTCTATTCCCTCTGGTTCTACCCATCTTCCAGGCCAGCTAAGCCAGCTGGGATACCCCTATGAGATGGCGACCTTCAGCAGTTACCTACCTCAGTTACAACAGCTGCAGCAGCAGAACCTGACCATGCCCCAGTTTGTCCTGGTTCAGCCTGGCCACCACATCGCTACCCAGCTGCAGCCTGGCCAGTTCATCATCTCACAGTCACCACAGGGCCAGCAGAGTCTCCTGCAAGGCCAGAGTCTTCTAACTCAACTACCTCAAAGCCAAGCCAacctcctgcaggctcatcccAGCATCACGCTCTCCACACAGCCAGCGACTCCAACCCGCACGATAGCAGCCACGCCCATCCAGCCTCTGTCCCACAGCCAGACCTCGCCCCCTAAACGCCTGGCCACGCCCAGTCTGGAGGAGCCCAGTGACCTGGAGGAGCTGGAACAGTTTGCCAAGACCTTCAAACAGAGACGCATCAAACTGGGCttcacacaggGAGATGTTGGCCTGGCTATGGGCAAGCTGTACGGTAACGACTTCAGCCAGACCACCATCTCCCGCTTTGAGGCCTTGAACTTGAGCTTCAAGAACATGTGCAAGCTGAAGCCACTGCTGGAGAAGTGGCTCAACGATGCAGTTTATGCAGACAATCTGTCGTCTGACCAGGCCCTGTCCAGCCCCAGCGCCCTGGGCTCCCCTGGCCTGGGTATGGAGGGGCTGAACCGCAGACGCAAGAAGAGGACCAGCATCGAGACCAACATCCGCTTGGCCTTAGAAAAGAGATTTCTGGAACAGAACCAAAAACCTACCTCTGAGGAGATCACCATGATCGCCGACCAGCTcaacatggagaaggaggtgatCCGGGTGTGGTTCTGTAACCGCCggcagaaagagaagaggatCAACCCCCCCAGCGGTGGATATAGCAACACAGGGACAGGCAGCAGCCCCATCAAAACCATCTTCACCCCTACGATCCCCCTGGTGGCCAGTACGGCCAGCCTTGTGACCAGTAACACACCGACCACACTGACTGTAAACCCAGTGATGCCTCTCAACAGCACCAGCGTATCTGGCCTGACCTTCACAGGCACGACCATAGGAGCAACCACAAACACGGCGTCTGTCATCTCCACGGCACCCATGGTTACTGCGGTGACCAGCTCCCCATCGCTAAGCCCTTCCCCCACGGCCCTCCAGGCCACGGCGGCGGAGACGGGCGGAACCCAGGAGCACACGGTGGTCACGCAGGCACCGTCGTCCCTAGCGACCACTCTGGGGACGGGTCAGGTGATGGTGGCTGGACTGGGCCTGTCGGCCGCCCTGCAAGGCGCCGCCCAGTTACCCACCAGCGCTAGTTTCGCCGCCATGGCCGGGCTTAACCAAGGACTTATGGCGTCAACGCAGTTCACTCCTGGggGGGCCTTGCTGAGCTTGGCTCCAGGGGGGCTGGGAGGGGCTCTAAACCCCGCCATGTTGAGCAACAGCACCCTGGCCACCATCCAAGGTCTGTGGAGCGCTCTGGCATCAGGCGGTGCTCTCCCCATCACCTCGCTGGATGGGAGCGGTAACCTGCTGTTCGCCAACACCTCCGCCGGCAGCACCCCCAACCTGATGCAACCCCTCTTCCTGAACCCCCAGAACCTGTCCCTGCTCACCACCAACCCTGTCAACCTGGTGTCAGCCGGAGCTGCTGGGGGAGGGGCCCTGCAGGTCTCAGCTGACCACCAGGTCACCACGGCGACTGTACCAGTTCCCGCCTCCACCATCACCTCTGCCTCCAGGGCCCAGTGAAGCTGGAGgcctcaaatggaaccctatgccctatttagtgcactactcttggttAAATGTAGCGTACGATATGTCTGGCTCTGGCCATATTAGGGCACtatatgggggaatagggctgtTGTTTGGGATTTGGCCTTAGACTAATGGCTCTACCCACCtgttcctcctctttcttctctctgtcaCGTCATTATTTAAATATTTTGCTGCCACCAAAAAGAAACCCTCTGTGAAGCGGgttggaatttttttttttttttaatgttggtATTTTTTCCATTCTCTCTTCCCTAGTACTCCAAAAATGATGTTTTGGTCGTTGGACGCTTCAGGTCACACAGGAGGACTGGGGCAGCCATTTTCTGAGGCATGATCGTCTTGAACTCTATGGTTTGTGCTCCTTGTGTGCCGCCTGACCTAACGTCTTGGGAGAGTAAATAACAGAGAAGACCCACCTTTTCTACTCCGTCAACTTTTTCACAAGTAGATATCTTTCTCTTCCCTGTTCAGAACTTATTCTGAAGTACTTCTAACCAAAAATGTGTGATTTttacttttaacatttttttttctaacaAAAATGATTTACTACTAAGTTCACAATCTACATCATCACTAAAAGGGGGGTTTGTGCGTCTCCCCTGTCTAGGTTGAGTTTATAGTGTCGGAGGCTCTGTTGGAAAGGCCTCAGCACGAATATCAAAGTTTTATTTTAGAGGCGTTTTAGTTTGTTTTCTCTTGTTTTTATGTGAGTGGACATTTTCAGAACTTTACGTCTAACATTAAGTTTTaactgctatatatatatatgtatatatatataattagttTTATTGTGGTTATAAGGCTTTAAAAATCTAGTAATAATAAGTGGCTGATATATAACGGTTATGGTTGCTTTAAGGAACAGGGTTAGCTGCgtggtctctctctggtcctctcggTCTGGTAACACTGAGTTTGACATTTCGCAGTAGCCCAGTGGCCATGGAGCATTTGTAAATGGTAGTCTAGGTGCGGACCATAGACACTGATATAAGAAATGATAACACTTAGAGCTTTAACCCGGGTTACATATGGACCCATGtctgtggggtggggggtggggtgggggggggggggggggggggggtcagggttCACAGTTCAGGGGTCAGGCAGTATAGGGGCTAAGTGGTTTTCTTGTGACCTTTACAGCTCAGGCAAATACAGACGCCTCAGTTAGCTGTATGATACATGGAGTTCTGTGACTGAGTGTTCTCTGACGGTCTGTCTGTATGGTTGCCATGCCAACTGGATGACGTTGGTGTGCGGTAGATGGGGACgttgtgtattttttttaatgccACCAATGAACTGCAGTCTGCCTGTTTTGAAAGTTTTTTAACATGTTTTATGATCCTTTATTTCTGCAGTCTTTCGACTGGCTTACTTCAAATATACCAAAAATATTTGTTAAAACTAGTgctgtttattgtcagtgtagctTAGCCTAGTCCTAATATTTATGAGtataaaatctctctctctctctctctctctctacacacaacaGGAGATGAAAATGCAATATGTTGATGATCACTTTCCAAAGACAAACGTATTTTTAAATTTGACTATGGCTCTCCCTGCTCAGCTTTAAAGTAGCAGGGCAAATAACCAAAAAGAAAGGTATGGGAAGACAGGTGTCTCCCTGTATAATGTTCATATATTTGAGGGGTGTTTAGGTTTGAATGGTAGCGGTTATATGATATCAATGGGTGCTTATCCTCTAGGCTCGGTCTCGTTTCTCTACATGTTTCCCCCTATGATGATATGGCAGACTGTCCTGACCCTTTCCAGACTGGCATATCcgcttgggcaacagtttggactGTAGTCAGGCTTTCAATAGTCGGGTAAGGGCTGTCCATTTTGAGTTTTTCTACTAATCCTCAGCCATGAAATAAAAAGCTTGAACCAAAGTCGTTTTCTCACTAGCTGCTGTGCCTGTGTGAGCCAGCAAGTGCTGTTCACACGATCACTATCTTACATAATACTACTACTGACAAGTTTTCTCCTCTTAAACCCACCTGTGTGCATCCCCCACCTCTAACCCGCTTCTAAGGAACAAGGATATTTTAGCTTTAATGACCAGCTGCTTTAACTTAGAATGGAGGCAAACGTTCTGCGTGTTTTCTTCTTCTAGCTTTGTGACCATATCCTGTTAGCAGGTCTCGATTTCCTGTGGTTGAagccttctctccttcccctcaatGCCCAACTAGCTTTACTATGGGGAGCTCATCCACTGGCAGCACCAGTAAAGATGTTTCGGACCAAGATCCTGACCTGTAACCAAGCAGCGTAGCCTCTGTGCTGCCCTTATCGAACTGCCCCTTTtcgtaacaacaacaacaacagcacacAGCAATAGTGTTGTTCTATCGGCCCTAACATAACCAGATTAATGACTGCCTGGTTTGAAAGCAGAGAATTCGCTCCACGCTGTTCAGTTTTTGTGCTCCTTTTTCACCCGTGAATTACTTTGACTAAATACCTCAGCAGCACTTAAACATTAGGTTCTCTAAGAAATCTGACACCCGCTGAATATTATAGAATGTACAAGAACTGTATGGCTGAATTGTACAAGATGGCCAAAAAAAAGAGTCATCGTTATCTCAAACTAGGACaaactactactgctattttCTAGTACTACTACTTATGGATATTTCCAGGTTTTAACAGTTTAACATTATTTTGTGATCCTTCTTGCCAAAGCGAAAGCCTTTCTCTCTGCGGCTGGGTTGACGTCTCCATGCTGCTCACTTGGCTGGCGTTCTGTCCGAATGGGACTTGTCGTTCTATTTGTAGtcctggttgtagtcattcaccAGTCGTGAAGTGCGGTAGCTAGGTGAACCAGTGTCCATTGGCACCATTGGAAGTTAATGAAATATTTATCTGCGGAACGACTAAAGGATAAGAgaaaaaaagctttttttttctctcttcttaattctatacatatatatatatatacacaacacATGTAAGatattcatattttatatttgaactAGTATGTTATCAAGACTGAATGTGATGTTTTGTCATGCTTATATtcaaaagacaaaaaaaacatttttttttattaatcatAGCAATTTTGAAAAACTTTCAAGACCAAAAACTTAGACCGCGCCCCCTTGGTGCATGAATCACAGACACCTGTAGCCATCACGTGTGGGTGTGGTCTGTTGAGTGGGAGGGGCTTGCTCTGGTGCTCCTATTGGACAGTCCCCGTTTGTGCTGTTGCTAGGGAAACAGACTGAAGCGCCTAATCttttttgtctgtgtgtttggttTACTATGGACTTGATTTGCTGTGCTGTTTTTAACAATCgttagatttttttaaaaattacGTATGCCTTTAATTGTTTTGTATAGCACGAGAGGGCAAGATCACTGGCTTCCTTAGTTTGACAAAATATGAAAATGATAATTTACGCCTTATCGTTATTTAGAAGACAAAAGCATTGTAGCATATGTTTGTGTGAGAGTAATCTAGTGAGAGAGGCTGCCTCCTCGCTATCTTTTGTGTTTAGCTAGCCTACTCAGTGCATAGTTCTTGGGCTTGTGCTGTTCTGGCACAGTTATGTTGCTACCTATGACTTTAGGGGTGACTCAGACAGGTGGCAATACCTGTAGGAAAGGCTTTACTATTAACTGAACTccagcagaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaaaggaagagagaaggaagagctGACTGAAGACCACAACGGTGCATTTGTTCTCAGCTTACAGATAAAGTATAATCATAAGAGCATTCAAGGAAGATGGGAATGAGAGTATGGAACAGTAGCTGAGTGTGTCAGTGATCCATTGCCTGTGATGGAGGCTGATACATGATCTTTGTTGGTATGCGATGGTGCACCAGTGAATCCTCTGGTTTGCTATATTTAATTATAACCTGTTGTGATGGCTCAGTCAGTGGATCCTTCAAACATACAGGATATTTGTGCGTTAGAGTGGATCCCCTTTGATACAGTTTTATTGTGTTTGGTGCCGTTGTGGATCTGGATGTCTCTCAGGTTTGTCTGATGCTCTAGAAGTGGTTCTGTGTTGATGCATGTGGCacagtggttgtgtggttgtgcaTGTGGCacagtggttgtgtggttgtgttgtcTGTGTGGTGGGTGTAAAGGTTTAGTAAAGGGAGAGGGCAGCGAGACACCAGGAAGTCTGGGGTAACTAGCTTGGTTAAGGGAGCTGCTGTATACCTCATTTAGCTCATTTAGCTCGAGACTGAGTGAAATTTGCTTTAAATCTACTTTAGCAAAGAAAAATATTAAacttaagaagaaaaaaaacataaacAACACCAAAAACACATGGTCCTATCAGAGAAGCTCACAAATGTCTGTTTTAAGAGTACAGAGTGTCATGACAGCTGCTGCCACCGGGGGGAGACAGGACACACTCCAGCACTTAAGAATGTCTGCTTCTCTTTATTTtgaacaacatcatcatcatcgctCACACTAAACACACAGTGACCTCTCACACCTCCACCTCCTATTATAATGCTGAAAGTATACTCACATTTCACTTTTTAGTAGTATGTACTTGATTTATCCCAATCTTATTCTGTTTTCTATGATTTGACAATCCTGTCCTTTTTTATATTCTTATTTAGATTGTAAATGTAGATGTTGGTGTGTCTACTCACCTGGTGGTGCGCTGCCTCGCTGCACTCTCTTTCCTGTGGTAATGTTAACCAAAGACTTCCAAAGTGATTGTATATGGACTAGACCATCTCTCACCCCTCCGCCTCATCATCCCGCGAGAAAAGACATGCAGCTGTGCTCACACACGCTCTTCCCTGAGCACCTGTAATGTCGATACGCCTGTATGGCAGAGCTGCGTGCGCACAGCGGACACAACAGGCACCTGTAGCAGGGCCTGTGGGGGAGGATAGGTGGAGTTTCGAGGGGCAAAGTGAGGTTCTCTGATAGACAGATCAATTATCCAATCCCGTGATGTCTGGGTGATGTTTGTTAATACACATTGAGGGTGCATCCTGTGCACGCTGTAAAGGCTCAGGAGTCACTttttctgtccctctgtctgtctctgtctgtctctgggacTGTTGCTAGGACACACCTTTTCCGTCTCAAAGACGGTCACAAAAATACACGGTTTCTGCTTCTTGGATACAGTGCGTATGTCTGGCTCCCTATCTGTGTATTGTAGTTGCCAGGATACATTGTCTCTAGGATACAAATTCTCtggttctttctctctgtctgaccactgttttctttctctgtctctgtgtctctctcttgcttctctctcCCGCTGTGACACTATGCATCATGGTCCTTCACTACACATGGCCTGTGTCTGATTGGCTAAGCTCTTTGGTCAATGGAGTCCCAGGGAAACGTTATATGATGCTTTATTCCAAGTGGGGGAGTTGTAGGATCTCACAAGCGCTATCCCAAAGCAAAAAATATCCAAATATTTAATGTTTGACAAACGCAGATACCAAAgatcactctctctgtcctgtcactttctctttctctctctctctctctctttctctttctctttctctttctctcaccctgcAGCTTGTGTATTAAGAGATAAACCCAGCACTGGCTTTAGCCCGAGCCCCAGTAATTCCAAAGCTTAGATGTATATTTTGGTATATTTCTGAGAAATCTAAATGGAAAAAAAGTCTGTTGTTTTAAAACAACAATCTTGTCTGTTTGGTGTATCGATCTTTTTCTGTCACAGCATGGAACTAATTGCAGAATTGTCTTACTCTTGGTAGATTAAAGATATAGTATTTTTGTATGTTTTGGGGTGTGTAAAAAAATTCTGTGTGTGAATATATCAGTTAACACGGCCCAAGTGTCAatggtttttaaaaaaaaacaggcagaaaaatacaataaaaacaaAAGGTCAACTTGTAAATAAACCTTCTGTTTGTGGATTTTTGAGAAATGCATTCTGTAAAATCATTGATAATTCTCCCTCTGTAAACCAAGCTAAACTAAAGGAATGTGCTCCTTTATCTTCTGACTAGTTTTTCCTCTGAGTACACCGTCTGTCACTGTCACTCTAGAACTCTGGGAGCCATGCTGTCGTTGTGACACGCGGTTCCACTGTTACACCATGGACTAGAACACTGCTCACTGTTGCCACGGGGACACATGCCTCATATCCAactaagaaccccccccccccccccccccccccccagacatggCAGTTGGCAGCATATAGAACTGAAAGATTGTGTAGAACATTAAGTATGTGAATCAGGATACATGGTAGATTTGATGCATTTGTCTGCTGTATTTCTTTTTAGGTTTTTATATGTATATAAAGATGAATCTtttactgtaactgtacagttcTCTTTTGttgtaaacgtcattaaaccatTTTCCAGGTGTTTTAACATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU335865 lncRNA downstream 1902 73659508 ~ 73660094 (-) True G296052
TU335848 lncRNA downstream 30035 73631659 ~ 73631961 (-) True G296042
TU335845 lncRNA downstream 33613 73628039 ~ 73628383 (-) True G296039
TU335814 lncRNA downstream 88073 73573650 ~ 73573923 (-) True G296012
TU335812 lncRNA downstream 90222 73571251 ~ 73571774 (-) True G296010
TU335871 lncRNA upstream 377 73697713 ~ 73699561 (-) True G296057
TU335883 lncRNA upstream 18969 73716305 ~ 73716793 (-) True G296068
TU335884 lncRNA upstream 19836 73717172 ~ 73717461 (-) True G296069
TU335886 lncRNA upstream 22772 73720108 ~ 73720353 (-) True G296071
TU335887 lncRNA upstream 23825 73721161 ~ 73721509 (-) True G296072
XM_036975124.1 mRNA downstream 10364 73642520 ~ 73651632 (-) True LOC110520557
XM_036975120.1 mRNA downstream 47466 73597442 ~ 73614530 (-) True LOC110520555
XM_036975122.1 mRNA downstream 47467 73597442 ~ 73614529 (-) False LOC110520555
XM_036975121.1 mRNA downstream 47579 73597442 ~ 73614417 (-) False LOC110520555
XM_036975118.1 mRNA downstream 48190 73597442 ~ 73613806 (-) False LOC110520555
XM_036975153.1 mRNA upstream 42335 73739671 ~ 73759734 (-) True zgc:92313
XM_021597956.2 mRNA upstream 154748 73852084 ~ 73867970 (-) False LOC110520571
XM_021597957.2 mRNA upstream 154748 73852084 ~ 73868375 (-) True LOC110520571
XM_021597959.2 mRNA upstream 173153 73870489 ~ 73877384 (-) False LOC110520572
XM_021597958.2 mRNA upstream 173153 73870489 ~ 73877576 (-) False LOC110520572
TU335855 other downstream 28960 73632038 ~ 73633036 (-) False G296043
TU335849 other downstream 28960 73632304 ~ 73633036 (-) True G296043
TU335813 other downstream 89085 73572292 ~ 73572911 (-) True G296011
TU334351 other downstream 781142 72876339 ~ 72880854 (-) True LOC110520539
TU334284 other downstream 885389 72775407 ~ 72776607 (-) True G294697
TU335926 other upstream 75818 73773154 ~ 73775299 (-) False G296102
TU335928 other upstream 75818 73773154 ~ 73775299 (-) True G296102
TU335922 other upstream 111146 73808482 ~ 73809596 (-) True G296100
TU336010 other upstream 175637 73872973 ~ 73873817 (-) True LOC110520572
TU336013 other upstream 180383 73877719 ~ 73880371 (-) True G296166

Expression Profile