RNA id: TCONS_00029031


Basic Information

Item Value
RNA id TCONS_00029031
length 936
RNA type mRNA
GC content 0.41
exon number 7
gene id XLOC_014690
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 18657029 ~ 18682510 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCATAAACTGCTGTGCTTTGCCACCAAAAGGACAAGATGCCTCACCTTAAGTGTGAGTTTGAtcatctgtttatttatattcTCTCAACCCTCTATACAAAGACACATCTTTGGAGTTTGTGCATGTGGTCAGTGTGTGGCTGACATCTTTTATGACGCATGGTTCCGAATGCACTACGACCCCAACATCGAACTTCTACTGACTAAGAAAAACAGCATACTCAGCGATGCACTCTACAGGTGGTGGCAAGTAAGTaaaagaaaaaataatccaCTTGATTATACTATGTTATTTGGCATATTCCCAAATGAAGAAGATTACTCTGATGCTGGTCCAGGCCGCTGCAGAACCTGTGCTGTAGTGGGGAATTCAGGGAACCTTAATGGATCTCACTATGGTGTTCTCATCGATGCCCATGATCTTGTCATTAGgaTAAATAAAGGACCAACTGAGGGTTTTGAGCGGGATGTGGGGCTTAAGACCACTCACCGTATGATCTACCCTGAGAGTGCTGTGGACATGGATAACTCCACTTATTTGGTGCTGATTCCTTTCAAGACTCTAGATCTGCAGTGGCTAATTAGTGTATTTACAACAAAACACATTGATCGAACATACATTCCAGTAAAACCCACTATAAAAGCAAACAGAAACAAGGTGAGCACAAATTTTCTGAAGTATGTCCAAGAACATTGGCTGCAGAAACATGGCAGATATCCATCCACTGGTTTTATTACACTTATATTTGCCCTGCACATCTGTGACCAGGTGAGTGTTTTTGGGTTTGGAGCAGATAAAGATGGAAACTGGCATCATTACTTTGAACATAAAAAGCATCCTCGGAATGCTGGCAATCATGGAGGAAGCTATGAGTATCTTATAGCACTTAAGCTTCACGAGAAACAAGGAATTCGTCTGTATAAAGGATGGTGA

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0003836 beta-galactoside (CMP) alpha-2,3-sialyltransferase activity molecular_function
GO:0008373 sialyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-100922-174 Predicted to enable beta-galactoside (CMP) alpha-2,3-sialyltransferase activity. Predicted to act upstream of or within protein glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000180771

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029029 lncRNA downstream 30716 18625434 ~ 18626514 (-) True XLOC_014689
TCONS_00029023 lncRNA downstream 59904 18596786 ~ 18597326 (-) True XLOC_014688
TCONS_00029022 lncRNA downstream 171349 18484706 ~ 18485881 (-) True XLOC_014687
TCONS_00029019 lncRNA downstream 238829 18417603 ~ 18418401 (-) True XLOC_014685
TCONS_00029016 lncRNA downstream 292265 18363317 ~ 18364965 (-) True XLOC_014684
TCONS_00030194 lncRNA upstream 61467 18743977 ~ 18753193 (-) True XLOC_014691
TCONS_00030195 lncRNA upstream 67095 18749605 ~ 18750318 (-) True XLOC_014692
TCONS_00030196 lncRNA upstream 149558 18832068 ~ 18841641 (-) False XLOC_014693
TCONS_00029773 lncRNA upstream 149558 18832068 ~ 18841798 (-) False XLOC_014693
TCONS_00030197 lncRNA upstream 149558 18832068 ~ 18844413 (-) False XLOC_014693
TCONS_00029024 mRNA downstream 30205 18617608 ~ 18627025 (-) False XLOC_014689
TCONS_00029028 mRNA downstream 30238 18617757 ~ 18626992 (-) False XLOC_014689
TCONS_00029027 mRNA downstream 30257 18617757 ~ 18626973 (-) False XLOC_014689
TCONS_00029025 mRNA downstream 30278 18617756 ~ 18626952 (-) False XLOC_014689
TCONS_00029026 mRNA downstream 30715 18617757 ~ 18626515 (-) False XLOC_014689
TCONS_00029039 mRNA upstream 164413 18846923 ~ 18855513 (-) False XLOC_014696
TCONS_00029040 mRNA upstream 164914 18847424 ~ 18855717 (-) False XLOC_014696
TCONS_00029045 mRNA upstream 307401 18989911 ~ 19026028 (-) False XLOC_014700
TCONS_00029046 mRNA upstream 308932 18991442 ~ 19026028 (-) False XLOC_014700
TCONS_00029047 mRNA upstream 308961 18991471 ~ 19025998 (-) False XLOC_014700
TCONS_00029018 other downstream 238467 18417181 ~ 18418763 (-) False XLOC_014685
TCONS_00028989 other downstream 999057 17518061 ~ 17658173 (-) False XLOC_014675
TCONS_00028991 other downstream 1130495 17518733 ~ 17526735 (-) True XLOC_014675
TCONS_00028976 other downstream 1446495 17208245 ~ 17210735 (-) True XLOC_014667
TCONS_00028972 other downstream 1657488 16999627 ~ 16999742 (-) True XLOC_014664
TCONS_00029036 other upstream 152217 18834727 ~ 18834857 (-) True XLOC_014693
TCONS_00029037 other upstream 155901 18838411 ~ 18838541 (-) True XLOC_014694
TCONS_00029038 other upstream 158903 18841413 ~ 18841543 (-) True XLOC_014695
TCONS_00029041 other upstream 171547 18854057 ~ 18855476 (-) True XLOC_014696
TCONS_00029042 other upstream 179229 18861739 ~ 18861880 (-) True XLOC_014697