RNA id: XM_021597957.2


Basic Information

Item Value
RNA id XM_021597957.2
length 3380
RNA type mRNA
GC content 0.48
exon number 6
gene id LOC110520571
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 73852084 ~ 73868375 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCACCCGATGTGCCTCGTTGCCTTTTCTGTGGGACAATTAAATAAATATAACGGGACCGTTATACGGGATCACTTTCTGGGTCCGTCTGTGAAAGCACTCATTCTGCCTTTTCACTGATGCCCCATGGTGACAGTATAACCCAGATCCGCAGGGGACTGGTAGTGGCATGACACCGTTGCCATGGTGACATCAGACCGTGAGACTGGGCCTGATCATGGGAGGCAGAAAGGAGGCACTGTTTGGAAGAACCTGTCCAAATACACCCCTATCTTCTTTTTTCTGGCCCTGTCTGGAATCATCTTCCTGTTGCGCAACATTCACACTCTTGagAAGCTCAACTGCCAAACAGTGTCGACACTCTACCAGTTCCAAAGCAGCATTCATTCAGCCTTCACCCCAGAGGAACAACCTCCTGTGGATCACAACCGGAGCTACTGTGGCCACCTGGGCCTGGAGCCCTCAGCCGAGGAGGCTCTGGAGCAGCGTTACCTCCTGGAGTCCATCGCGTGGCCAGAGCCTCAGCCTCGGCTGACGCCTAGACCCCTGCGGCAGACCAGCGACCCTGCACACAGCCTGTTTGCAATCCTGCCAGGAGGGGGCGGGAGAGAGTGGCATGTGGGGGATCAGCTAGAGGCGCTAGTCCATATGCATGACTTCCAGGGGCGTCCCAAGCGTCACGGTGGGGACTTCCTGCTGGCCCGGCTGCATTCCCCAGAGTTGGGGGCGGGTGTTGCAGGACAGGTGCTGGACCACCGGAATGGGCTCTACTCAGCCGTGTTCCCGTTACTATGGGAGGGGTCTGTACGGGTAGAGGTGACACTAGTCCATCCTAGTGAGGCAGTTGCTGTGCTGCGTCGGTTACGAGAGGAACATCCCGACCGTGTCTTCTTCAAGAGTCTGTTCCGCTCTGGATTCCTGTCTGAGACCACCGTGTGCAACCTGTGCCTGCCAACCACCCGTCAGCCGCTGTGCAATTATACGGACCCTCACACAGGTGAACCATGGTACTGCTACAAGCCCAAACTGCTCAGCTGTGACACGCGGATCAACCACGCCAAAGGAGGCTACCAAAAACACCTGCTCACCAACAAAGAGTCACTGCTCTTCCAGAGTGGTGTAAACATCAAAGTCCGTGTTCATGCTTCCGGGTCTGACAGTGTCATTGTGCAGCCTGAGAAGAAAGacaaaccagagagggagagcagcagtgtgagaGCGGAGCCTATCAGGGTCACTCCATCTGGGTATTACTTCCAAGGGTCATGGCGAGCGCTGGGTGGTGTCGCAATGCATCAGTTTAACGACTCTTCTGCCATTACTCAGTGTCTGAAGGGCAAGGTGGTGTACATGTATGGAGATTCCACTGCTAGACAGTGGTTTGAGTACCTCAATGCCTTTGTCCCAGAGCTGAAGGAGTTCAACCTTCACAGTCCTAGGAATGTGGGGCCTTTCATGGCAGTGGACAGCACCCACAACATCCTGCTGAGATACCGCTGTCACGGTCCTCCAATACGCTTCTCCACTGTCATTGCCAGTGAGATGCGCTATGTAGCTAACGAGCTGGACGGCCTGGCGGGAGGCCCTGATACCGTGGTGGTCCTCAGCGTTTGGGCCCATTTTAGCACCTTCCCTGTAGAGGTCTACATACGCAGGCTACGCCACATTCGACGGGCGGTGATGCGGCTTCAGGACCGGGCTCCGGGGACCCTGATAGTGGTGCGTTCAGCCAACCTCCAAGCCCTGGACCCAGAGGTGAGCCTGTACAATAGTGACTGGTTCTCAATACAGCTGGACGGTGTGCTCAGGGCCATGTTTAGGGGTCTGGATGTCTTGCTGGTCGATGCCTGGGAGATGACCCTTGCTCACCACCTCCCCCATGCTCTCCACCCGCCTCCAGTCATTGTCAAGAACATGATTGACACTATCCTCTCTTACGTATGCCCAGAGAAGAGCTAGCCCGAGAAAGGAAAAGAGTATGGAAGATTACAAATTTGTGTGAGATGGGGAGTGTGGTTATGTTTACAAGAGTTACTTATAGTGTAATCACAAAGCTCACCTGTTTACTGCGAGCATGGCCTGATGTAGCCTAAGCCCTATCTGCTGTGTACCTGCTTCCTGTATATGGGATCCGCTGTTGTGAAGTGACCTAGTGTTTTTATCAACCATCTCACAGTCACAAATAAAccaggagagatggggagataaaCAACGGGACTGATTGAATCAGTCAACTATGAACAGATTACTGACTTTGACCCCACCTGCTGTATTTAAAGTTGAATGGCCAACAGTTCAAACGGTTCTTGTTTCAAAGGATTATTTTAAGAAATGTGTGTGAAAAGTTTTATGCAATAGTTTCTGACATTCAGTGTTTTGTTTTATGGGAAACAGCCTTGTTATTGAATTGTGACTCAcagattgttaaaaaaaaaaaaaaaactacagatTTCAACTAATTCTGTTCAATACACTTTTGCAAAACTTGAATGGAATATcggctgccataaagtgcaataaGTATATGTAGGCTACTGCAGTGCAGTAGGGGATTTTGAGAGTGGGAAATGCAGTAAAACAAATGCATGGAAAATGACACATTTGCCAAATCCTGTACTTTAGTCTTGCATTAATGATGTTCTCACTCTAAATATCAAGTATGTTTGGTTATACACAAACTGGAGCAAAGTTTAGAAGGTATTTTGACAAAAGTACATGTGAGGAAAATAATGGTTGCAAACCTCAATGTGAATCCAGCTCTTGTCATGTCAAATAAATCAGTTTGGTTTAGTGTGGGCCTCTGGGAAATGCCCAAGGCATGTCGCCGCAATTTAGCCTACAACTTAACAGATGAATATTTGTTAACTGAGTTCTGTACCAAATCATGTGCTTTCCTATGTATTCCATGTCCAAGGATGTTCAGAAACGTAACCCTTGAGGACtttgtctgctggtttttgtcATCCATTAAGAAGTTTACAGGCCTGAATCAGATGGTGATGGAAACGTTCTAGGTCATCAACCAGCAGACAGCCTTCCTTCAGGACTGGCTTTATTCTTCTTATTACGTGTTATTTTTCAAGTACTTCTGCAACAGTTTACATCAAAATGTGACGTTATTTAAATCTAGGAATAACTTTTATCATGTAACTGTTTACCCTTTTAAGACTCTTGTTAGGCAGTCTCAAAGTGATGCCATTTTGTAGCTAACAGTTACAGCAGTATTATTGCCTATGCCATACACCACAGCTGGAATGCTTTAACATGTTACCGTTTGCCAAGCTTCGCTATTGCCAAGTGTTACCTCACTTTCTACCAGTTACCATAACAGTGTTAACTTGCCACAATTCAAATATATCTCCCATTGAACAATTGCAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU335982 lncRNA downstream 6106 73845287 ~ 73845978 (-) True G296141
TU335970 lncRNA downstream 27420 73824192 ~ 73824664 (-) True G296129
TU335961 lncRNA downstream 33615 73817522 ~ 73818469 (-) True G296120
TU335957 lncRNA downstream 38954 73811954 ~ 73813130 (-) True G296117
TU335923 lncRNA downstream 41648 73809885 ~ 73810436 (-) True G296101
TU336009 lncRNA upstream 2135 73870510 ~ 73871479 (-) False LOC110520572
TU336011 lncRNA upstream 3850 73872225 ~ 73872570 (-) True G296164
TU336012 lncRNA upstream 4359 73872734 ~ 73872956 (-) True G296165
TU336050 lncRNA upstream 60486 73928861 ~ 73929759 (-) True G296193
TU335989 lncRNA upstream 79696 73948071 ~ 73949708 (-) True G296144
XM_036975153.1 mRNA downstream 92350 73739671 ~ 73759734 (-) True zgc:92313
XM_036975135.1 mRNA downstream 154722 73661996 ~ 73697362 (-) False LOC110520558
XM_036975143.1 mRNA downstream 154722 73661996 ~ 73697362 (-) False LOC110520558
XM_036975150.1 mRNA downstream 154747 73661996 ~ 73697337 (-) False LOC110520558
XM_021597959.2 mRNA upstream 2114 73870489 ~ 73877384 (-) False LOC110520572
XM_021597958.2 mRNA upstream 2114 73870489 ~ 73877576 (-) False LOC110520572
XM_021597963.2 mRNA upstream 15166 73883541 ~ 73889222 (-) True LOC110520575
XR_005051379.1 mRNA upstream 92041 73960416 ~ 73973401 (-) False LOC110520576
XR_005051378.1 mRNA upstream 95228 73963603 ~ 73973401 (-) False LOC110520576
TU335922 other downstream 42488 73808482 ~ 73809596 (-) True G296100
TU335926 other downstream 76785 73773154 ~ 73775299 (-) False G296102
TU335928 other downstream 76785 73773154 ~ 73775299 (-) True G296102
TU335855 other downstream 219048 73632038 ~ 73633036 (-) False G296043
TU336010 other upstream 4598 73872973 ~ 73873817 (-) True LOC110520572
TU336013 other upstream 9344 73877719 ~ 73880371 (-) True G296166
TU336000 other upstream 102107 73970482 ~ 73971830 (-) True LOC110520576
TU336182 other upstream 370812 74239187 ~ 74239795 (-) True G296315
TU338161 other upstream 2092172 75960547 ~ 75963074 (-) True G298065

Expression Profile