RNA id: XM_021597963.2


Basic Information

Item Value
RNA id XM_021597963.2
length 1776
RNA type mRNA
GC content 0.40
exon number 5
gene id LOC110520575
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 73883541 ~ 73889222 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACACCAATAGGAATTAGGAGCGTCTTGTTGTGGTACTGTGCTAGATAGGTTGCGCTGTGAAGAAAAGTCACCACCTTGTAAAAGCTCTCAAATCAAGGCCACCGGGAATGAGCACTGTTAGCTACATGCCAATAGGTTTGCATTAGAAGGTCGAAAGTATTACAACGCTTTTGACATTTTTCCCGAACCGTTTTATGACTACATTGCTGCAAATATTAGATATAGGGCAATACCAATACTCAAGTCGAACTAATTTACCTTCGTAGCTACgtatttagcaagctagctagcttgctaggtcAGGTGTAGCTAACGTTAGACAGCAACATTAGCCTTTTGCAAACATGGCTGCGATGAGAGTTTCCTATCACAAACTGCTGGATAAGATCGGGCTAATGTTGCCAGCAAAACTGAGACCTCTCTACAATCACCCTGCAGGTCCAAAGACTATTTTCTTCTGGGCCCCGATGTTCAAATGGGGTCTGGTCGGGGCTGGTCTGGCAGATATGAGTCGACCAGCTGAGAAACTGAGCTTTTCCCAGTCTGCTGTACTGACAGCCACAGGTCTGACCTGGTCCAGATACTCTTTGGTCATCATTCCAAAGAACTGGAACCTCTTTGCTGTCAATTTATTTGTGGGTAGTGCTGGAATATCCCAGCTCTACAGGATCTTCCAGTATGAACAAGGGAAGAAGGCACTAGCAAAGGAGGAAGCTGCCCCAGCAGAGTCTTGAATTATGTCACCAGTCCATCTCCATGGACTGTAAGGGAGCTTATCACCGGCACAAACCCAGTCCCTCTAAGCCCCTCCATCCCTTTTCCATCCTCACTCGATtttacagtagaaaaaaaacaatgttttctTCACTGTAGATCATGTAATTTGCCTGGATTTCTTCAGGGTTATAATGGCATATTAACCCTTACCAAACACGCAAATGTTTGTCATCTACGCACAAGCTGTAGTATTTAAGTTTTACTTCATACAACAAATGGCATGACTGTTTTTAATTTGTTCATGATTAATGTTTAGCGTGCACGTTTTGGGAAGTGTTGCATTTTTTCCGTTATTTCTTTTGAGTAGTCGTCATTCCTCATGGAGTGGTTTCCAAACAAGGAAGGTCTTGGATCTGTGTTGATTGTGGTTAAAAAGAATGTCTCCCCaaattaaaaatgttttaaaaaaaatgtcactTTCATCCCATATGCTTATTCAACTATTTTCAGCAATTTTGGTAACTATGTCTATATCAGTAGGATGATTCAACCGTACATGCATACCATGTGACTGTTCCTTCCACGTGTAGTAAACACTTTAACAAATAaatcaggtaaaaaaaaaaacatttcatataGCTTTTAACTGTAGACTTTCAAATGCCAGTAGGAAATCACCTTTTTCCCCCTGATCATTAGGAGGAACCTTTTGGTAATGTGTCCTATGTGTTCCAGTATTGGGAGCTGAATCTAGCGTGGTACTTGGACCCAAGAAGGACAACATGTATTGGCCCTGTAGTCAAGGTCCTCGTCTCCTATTGGTTGGTTCTCAGTAGTTGGGAGACGCATAATCTGTTAGTGTAACTAGATGAGAATTTAAAAAGTAATTTTGTTCATTGATCTCTGAAATTTTATAGCAATAACTGGCTAAATACATTGGTCCACAATGCACTGAAACATGAACAGGCACTTATGTATGTCGAGGTTATATCTTTAGTgtctatgatatatatatatatgccctTATTTGTTCTGTTGAATTAAAAAATCTTGGCATA

Function

GO:

id name namespace
GO:0006850 mitochondrial pyruvate transmembrane transport biological_process
GO:0005743 mitochondrial inner membrane cellular_component

KEGG:

id description
K22139 MPC2; mitochondrial pyruvate carrier 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU336012 lncRNA downstream 10585 73872734 ~ 73872956 (-) True G296165
TU336011 lncRNA downstream 10971 73872225 ~ 73872570 (-) True G296164
TU336009 lncRNA downstream 12062 73870510 ~ 73871479 (-) False LOC110520572
TU335982 lncRNA downstream 37563 73845287 ~ 73845978 (-) True G296141
TU335970 lncRNA downstream 58877 73824192 ~ 73824664 (-) True G296129
TU336050 lncRNA upstream 39639 73928861 ~ 73929759 (-) True G296193
TU335989 lncRNA upstream 58849 73948071 ~ 73949708 (-) True G296144
TU335990 lncRNA upstream 60703 73949925 ~ 73950171 (-) True G296145
TU335998 lncRNA upstream 61285 73950507 ~ 73951555 (-) False G296152
TU335999 lncRNA upstream 61804 73951026 ~ 73952102 (-) True G296152
XM_021597958.2 mRNA downstream 5965 73870489 ~ 73877576 (-) False LOC110520572
XM_021597959.2 mRNA downstream 6157 73870489 ~ 73877384 (-) False LOC110520572
XM_021597957.2 mRNA downstream 15166 73852084 ~ 73868375 (-) True LOC110520571
XM_021597956.2 mRNA downstream 15571 73852084 ~ 73867970 (-) False LOC110520571
XM_036975153.1 mRNA downstream 123807 73739671 ~ 73759734 (-) True zgc:92313
XR_005051379.1 mRNA upstream 71194 73960416 ~ 73973401 (-) False LOC110520576
XR_005051378.1 mRNA upstream 74381 73963603 ~ 73973401 (-) False LOC110520576
XR_005051411.1 mRNA upstream 84230 73973452 ~ 73973615 (-) True LOC118964355
LOC118964353 mRNA upstream 85108 73974330 ~ 73974439 (-) True LOC118964353
XR_005051412.1 mRNA upstream 88158 73977380 ~ 73977551 (-) True LOC118964361
TU336013 other downstream 3170 73877719 ~ 73880371 (-) True G296166
TU336010 other downstream 9724 73872973 ~ 73873817 (-) True LOC110520572
TU335922 other downstream 73945 73808482 ~ 73809596 (-) True G296100
TU335926 other downstream 108242 73773154 ~ 73775299 (-) False G296102
TU335928 other downstream 108242 73773154 ~ 73775299 (-) True G296102
TU336000 other upstream 81260 73970482 ~ 73971830 (-) True LOC110520576
TU336182 other upstream 349965 74239187 ~ 74239795 (-) True G296315
TU338161 other upstream 2071325 75960547 ~ 75963074 (-) True G298065
TU338234 other upstream 2165899 76055121 ~ 76057006 (-) True G298131
TU338309 other upstream 2276781 76166003 ~ 76166401 (-) True G298192

Expression Profile