RNA id: TU336001


Basic Information

Item Value
RNA id TU336001
length 1573
lncRNA type sense_over
GC content 0.42
exon number 1
gene id LOC110520576
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 73960416 ~ 73973401 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtcaggagacactgtgactccatccgaggacacccccggacagggccaaacaggaaggataagATACTGTGGATCCCTGAAGGAAAGAGCTTATTAGTGTAGGAAGCATTTGATATGGTTAGCATTTGTTTTGGCTTTGTTTGATTATTAGGAGGTTTTTATTTAAATAGTATTGAATTTGAAAGGGATATATGACTTCTATGATGATTAGGATTATTGTTAGGATCAAGATAGATTGATAAAGGAAATGCAAGGACTTTAGAGATTGCCACTCAGACACGTTTTTTTCTAAAATCAATAATTTTAGATAAAGTCAAACAGCGAGACGCTTAGTGGTATTTGAGAGATAGGAGGGAAAAGGGTTACTGTTTAAAtcgataaatatatatttaagaaAATATATAAGTTGCACAGATACTTCTTAAAGTAGAAAAGACACTTGACAGAGAATTCGTACAGGATTGACATGAATGGACGCccaagggagaattggacatgtggaaAATGAAAGGGGCGCTCCTACATGATGATGTCAGACATAAGAATAATttactaatcttacctaagtcattgTTTAGAGTAGGCAAGGTggttacctgggcagagccaggtatcaaagGGGGGATGGGTAAATTGTGTTCTAGGATAGGATGTGACCTACTGGAtattaaaattaaaaaattaaaaaaaatagctAACAAGTAGGTATAGAAGTTAAAGATATAATCAGATAGAACaaatgagaaactgtttgttaaccaaacctgtatgtccaagattttatgcactacaggtgaattacaggtgaagtcactcaatccagtccctgAGGCCTGTTGGGGGGAACATAccaaggactcctggtgacagctagctgaaagagctacccggATTCATATCACACTGCGGGAGGGTAAGACACATTGAGACTGTCGAACAATaacagtgttcgagaggagaactggaattaacagaattcTGGGGGCTATCTCTCGAATGAAGATTTCCTTACCTGTCATTCCATccctgtttttgttcatagaagtgaaaGTGTGTCTGGCTCTTGCTAATGATGTGTTCTCTGGAAGAGGGTAGGGCTTTATGGGTGGGCTGTCCATCCTGAGCTGTCTGGTTGTGGGACCTTATTCCtgataccccaccatacccctgtctgcgcattatgccctgaatatattctaccatgcccagaaatctgctccttttattctttgtccccaacactctaggcgaccagttttgatagcctttagccgcacgctcatactactcctcctctgttccgtgggtgatgtggaggtaaacccaggccctgcatgtcctcaggcaccctcatttgttgacttctgggATCGAaaaaaccttggtttcatgcatgtcaacatcagaagcctcctccctaagtttgttttactcacggctttagcacactctgctaaccctgatgtccttgccgtgtctgaatcctggctcaggaaggccaccaaaaattctgagatttccatacccaactataacactttccgtcaagatagaactgccaaagggggaggag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU335996 lncRNA downstream 4313 73957970 ~ 73958987 (-) True G296151
TU335993 lncRNA downstream 7253 73954904 ~ 73956047 (-) True G296148
TU335999 lncRNA downstream 11198 73951026 ~ 73952102 (-) True G296152
TU335998 lncRNA downstream 11745 73950507 ~ 73951555 (-) False G296152
TU335990 lncRNA downstream 13129 73949925 ~ 73950171 (-) True G296145
TU336060 lncRNA upstream 12739 73977611 ~ 73977948 (-) True G296203
TU336066 lncRNA upstream 18230 73983102 ~ 73983378 (-) True G296206
TU336073 lncRNA upstream 44447 74009319 ~ 74009676 (-) True G296213
TU336133 lncRNA upstream 146084 74110956 ~ 74113300 (-) True G296267
TU336162 lncRNA upstream 201690 74166562 ~ 74167156 (-) True G296295
XM_021597963.2 mRNA downstream 74078 73883541 ~ 73889222 (-) True LOC110520575
XM_021597958.2 mRNA downstream 85724 73870489 ~ 73877576 (-) False LOC110520572
XM_021597959.2 mRNA downstream 85916 73870489 ~ 73877384 (-) False LOC110520572
XM_021597957.2 mRNA downstream 94925 73852084 ~ 73868375 (-) True LOC110520571
XM_021597956.2 mRNA downstream 95330 73852084 ~ 73867970 (-) False LOC110520571
XR_005051411.1 mRNA upstream 8580 73973452 ~ 73973615 (-) True LOC118964355
LOC118964353 mRNA upstream 9458 73974330 ~ 73974439 (-) True LOC118964353
XR_005051412.1 mRNA upstream 12508 73977380 ~ 73977551 (-) True LOC118964361
XM_021597964.2 mRNA upstream 21029 73985901 ~ 74028822 (-) True LOC110520577
XM_021597965.2 mRNA upstream 139648 74104520 ~ 74107240 (-) True LOC100136284
TU336013 other downstream 82929 73877719 ~ 73880371 (-) True G296166
TU336010 other downstream 89483 73872973 ~ 73873817 (-) True LOC110520572
TU335922 other downstream 153704 73808482 ~ 73809596 (-) True G296100
TU335926 other downstream 188001 73773154 ~ 73775299 (-) False G296102
TU336000 other upstream 5610 73970482 ~ 73971830 (-) True LOC110520576
TU336182 other upstream 274315 74239187 ~ 74239795 (-) True G296315
TU338161 other upstream 1995675 75960547 ~ 75963074 (-) True G298065
TU338234 other upstream 2090249 76055121 ~ 76057006 (-) True G298131
TU338309 other upstream 2201131 76166003 ~ 76166401 (-) True G298192

Expression Profile