RNA id: TU336000


Basic Information

Item Value
RNA id TU336000
length 1349
RNA type TUCP
GC content 0.33
exon number 1
gene id LOC110520576
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 73960416 ~ 73973401 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGAGTGGGACGCTGACAACGATACAGGAGACGGAAATGGATACAGGAAGCACAACAGGCATAGGAAAGAAGAATTTGAGTTGGTTGGAAGAGATGGATTTTGAGTCAATTTCAGATTCAGAAGACATGGAAAAGATTGATAGAACAAGGGGAGGCTACAGGAAGAGGAAAGCGTCGGTGTCGGTGAAAAAGAACGGAAAAGGAAGAAAACATGACAACAGGTAGAAGATaatgagaaaatatatatattttttattatttattggaATGGTTCATTTTTTGTCAATCAATGCGAATGGTTTAAGAACAATGGAAAAATTTCAAagaatagtaaaaatgaagaattCAGAGATTTTATGCCTTCAAGAAACACATTGGGACAATGTATGTATTTTAGAAGTTAAAAAAATATGGAGAGATTTTATTTTTGTTAACAATGGCAGGAGGAATTCAAGTGGTGTTGATATTTTATTGAGGAAGGATGTAGTAGATAATGTGAAACATatatataatgataataatgggAGGATTTTAATTTTAGATTTTGAATATATGAGTATGGTTTttagaattataaatatttatgCGCCTAATACTGAAATAGAGCACAAAGATTTATTTTTAGAATCAGGAAAATGGTGTGAGGGAAACtgtgttgtagttggggattttaATGTTAAAATGGATAGACTGGATATGACAAGATGAGCTATTTTTAGAAGTGATCTAGGTATCTAGGGGGGTTTTAAAGAAGATGATGTTAGAAAAAGGAATGATtgatagatggagagaggaaaaTCCAGACAAAATATAATTTTCTAGAAGGCAGGTGGTTTTAGGGGATTTGAAACAAACAAGGATAGATCTGGGTTTAGTAAAATAAGGTTTAAGGAATTTTATGAAAGATATTAAGtatgtttttacaacttttagTGATCATGCAGGTTTAACATTTTCAGTGGGCTTAGATAAGGAAAAAACAGGGGTGGAATATGGTGTATGAATGCAGGGTATTTAGAAGATGAGGAATATGGGAAACAACTTAAATCTTTGATAGCATGTGAAATGGAGGATAAGCAGAAAGAGAATGATAAGTGTTTATGGTGGGACAAGGTTAAGGAAAAAATTAAAGTTTTTAGTGTAAAATATGCAAGGAAAAAGAGAGGTAGGGTGAAAAGAGAAGAAAATGAGTTGAGAGCTAAATTGGATGAAGAAATGGGGAAGTGTGACAGTGAGCCTAATTATAATATAGAAACGTTTTTGGATTTAAAAGCACAATTGAGTAAATATGAAATAGATAAGTGTAAGGGTGCAATTATAAGAAGTAAGGCAAAGTATGTTTTGGATGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU336001 lncRNA downstream 5610 73963300 ~ 73964872 (-) False LOC110520576
TU335996 lncRNA downstream 11495 73957970 ~ 73958987 (-) True G296151
TU335993 lncRNA downstream 14435 73954904 ~ 73956047 (-) True G296148
TU335999 lncRNA downstream 18380 73951026 ~ 73952102 (-) True G296152
TU335998 lncRNA downstream 18927 73950507 ~ 73951555 (-) False G296152
TU336060 lncRNA upstream 5781 73977611 ~ 73977948 (-) True G296203
TU336066 lncRNA upstream 11272 73983102 ~ 73983378 (-) True G296206
TU336073 lncRNA upstream 37489 74009319 ~ 74009676 (-) True G296213
TU336133 lncRNA upstream 139126 74110956 ~ 74113300 (-) True G296267
TU336162 lncRNA upstream 194732 74166562 ~ 74167156 (-) True G296295
XM_021597963.2 mRNA downstream 81260 73883541 ~ 73889222 (-) True LOC110520575
XM_021597958.2 mRNA downstream 92906 73870489 ~ 73877576 (-) False LOC110520572
XM_021597959.2 mRNA downstream 93098 73870489 ~ 73877384 (-) False LOC110520572
XM_021597957.2 mRNA downstream 102107 73852084 ~ 73868375 (-) True LOC110520571
XM_021597956.2 mRNA downstream 102512 73852084 ~ 73867970 (-) False LOC110520571
XR_005051411.1 mRNA upstream 1622 73973452 ~ 73973615 (-) True LOC118964355
LOC118964353 mRNA upstream 2500 73974330 ~ 73974439 (-) True LOC118964353
XR_005051412.1 mRNA upstream 5550 73977380 ~ 73977551 (-) True LOC118964361
XM_021597964.2 mRNA upstream 14071 73985901 ~ 74028822 (-) True LOC110520577
XM_021597965.2 mRNA upstream 132690 74104520 ~ 74107240 (-) True LOC100136284
TU336013 other downstream 90111 73877719 ~ 73880371 (-) True G296166
TU336010 other downstream 96665 73872973 ~ 73873817 (-) True LOC110520572
TU335922 other downstream 160886 73808482 ~ 73809596 (-) True G296100
TU335926 other downstream 195183 73773154 ~ 73775299 (-) False G296102
TU335928 other downstream 195183 73773154 ~ 73775299 (-) True G296102
TU336182 other upstream 267357 74239187 ~ 74239795 (-) True G296315
TU338161 other upstream 1988717 75960547 ~ 75963074 (-) True G298065
TU338234 other upstream 2083291 76055121 ~ 76057006 (-) True G298131
TU338309 other upstream 2194173 76166003 ~ 76166401 (-) True G298192
TU339219 other upstream 2811013 76782843 ~ 76787731 (-) True G299024

Expression Profile