RNA id: XR_005051412.1



Basic Information


Item Value
RNA id XR_005051412.1
length 172
RNA type mRNA
GC content 0.46
exon number 1
gene id LOC118964361
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 73977380 ~ 73977551 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTCCTCACCAGCATTATTTCCTTTGATCATTTGAACAGGGCGAAGGAGTACCAAGCACACACAAGCTGCATTCAGTAACGATTATCGTGCTGACCCCTGTGAATTTCCCAAATGTGGAAATCTCAATTGCATAATTTATGGCAGTGGGGGACTAAGTTCACGCTCTCCCCTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU336001 lncRNA downstream 12508 73963300 ~ 73964872 (-) False LOC110520576
TU335996 lncRNA downstream 18393 73957970 ~ 73958987 (-) True G296151
TU335993 lncRNA downstream 21333 73954904 ~ 73956047 (-) True G296148
TU335999 lncRNA downstream 25278 73951026 ~ 73952102 (-) True G296152
TU335998 lncRNA downstream 25825 73950507 ~ 73951555 (-) False G296152
TU336060 lncRNA upstream 60 73977611 ~ 73977948 (-) True G296203
TU336066 lncRNA upstream 5551 73983102 ~ 73983378 (-) True G296206
TU336073 lncRNA upstream 31768 74009319 ~ 74009676 (-) True G296213
TU336133 lncRNA upstream 133405 74110956 ~ 74113300 (-) True G296267
TU336162 lncRNA upstream 189011 74166562 ~ 74167156 (-) True G296295
LOC118964353 mRNA downstream 2941 73974330 ~ 73974439 (-) True LOC118964353
XR_005051411.1 mRNA downstream 3765 73973452 ~ 73973615 (-) True LOC118964355
XR_005051379.1 mRNA downstream 3979 73960416 ~ 73973401 (-) False LOC110520576
XR_005051378.1 mRNA downstream 3979 73963603 ~ 73973401 (-) False LOC110520576
XM_021597963.2 mRNA downstream 88158 73883541 ~ 73889222 (-) True LOC110520575
XM_021597964.2 mRNA upstream 8350 73985901 ~ 74028822 (-) True LOC110520577
XM_021597965.2 mRNA upstream 126969 74104520 ~ 74107240 (-) True LOC100136284
XM_036975206.1 mRNA upstream 187967 74165518 ~ 74246111 (-) False LOC110504742
XM_036975194.1 mRNA upstream 187967 74165518 ~ 74438683 (-) False LOC110504742
XM_036975195.1 mRNA upstream 187967 74165518 ~ 74438683 (-) False LOC110504742
TU336000 other downstream 5550 73970482 ~ 73971830 (-) True LOC110520576
TU336013 other downstream 97009 73877719 ~ 73880371 (-) True G296166
TU336010 other downstream 103563 73872973 ~ 73873817 (-) True LOC110520572
TU335922 other downstream 167784 73808482 ~ 73809596 (-) True G296100
TU335928 other downstream 202081 73773154 ~ 73775299 (-) True G296102
TU336182 other upstream 261636 74239187 ~ 74239795 (-) True G296315
TU338161 other upstream 1982996 75960547 ~ 75963074 (-) True G298065
TU338234 other upstream 2077570 76055121 ~ 76057006 (-) True G298131
TU338309 other upstream 2188452 76166003 ~ 76166401 (-) True G298192
TU339219 other upstream 2805292 76782843 ~ 76787731 (-) True G299024

Expression Profile