RNA id: TCONS_00030199


Basic Information

Item Value
RNA id TCONS_00030199
length 945
lncRNA type inter_gene
GC content 0.41
exon number 6
gene id XLOC_014693
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 18832068 ~ 18844413 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCGGAAACCGAATGGTCTTTTCGACTTGGTTCAGAGGAGCACGCGGATTGCACCCCTGTTCCAGTATGGCTGCTATCATCCCCATTTTGATCGTCACTGTAGTGTCAAATGTTTCTGGAATGCTCGCTATACCATTGTGGGGACATGACAAACTCTGTTGCACAACTCTGGCAGCTGAGGACGATTTGAGCTTGTGGGAGTGACAAACTGTGCGACCCTGATATAGCCACCTGATGGCTGTGAGCTCCCTTCAGGAAAGATGCAGAATGAATCATTTCAGTTGAGGAGTCTGAACATGGTGTCAAACAAAAGCTAAAGAGATATAGGCTCTATCCTATTTAGGGACGCATGACAATCTCTGTACAACCCTGATAAAAGCAGCTCATTACAAGAAAGGGCTGTCCCATCAACTAAGCAAGCTAAAGGTGACTGGAAAGGCACCAAAACTCCACCAATTGACAGAAATTGAGAAGAAACTTGGGACGAGTTCTCCTTTGGCTTAATAAATGAAGAGTCGGAGCTGAAGTTGTCAAGTGGAAGATTGGCTTTGGTGTTCTTctgcataaatgaataaatgaattgatatGCATTGCACTTTGGTTTGCAAGTCAATGAACAGATACATTTCAAAAACAGACATGTAGGAGGATTTAGAATGGATGAAAATAACCTAAATAAAAGATTGATAAAGCTCAATAATGGCTTGAGGAATTGTTTTGGTGAACACTTTCTCACTTTCTGTGAATGGAGGCTAACATTTTGTACAGTTTATCTGCGGGGTCAGAAGCTCAACTTTAGGCCTTGTCTTAACTTaagtcttgtaggtcttaaaggAAATATAAGActcgtttaaaatgatttatgtaaagctacccaatcaatcCAACACGTCTAATCACCCAAAAAAACCTTTGACCaaattattaattactaataacagtctg

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0065003 protein-containing complex assembly biological_process
GO:0006364 rRNA processing biological_process
GO:0006396 RNA processing biological_process
GO:0006413 translational initiation biological_process
GO:0060429 epithelium development biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0071013 catalytic step 2 spliceosome cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0005685 U1 snRNP cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0005730 nucleolus cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030194 lncRNA downstream 78875 18743977 ~ 18753193 (-) True XLOC_014691
TCONS_00030195 lncRNA downstream 81750 18749605 ~ 18750318 (-) True XLOC_014692
TCONS_00029029 lncRNA downstream 205554 18625434 ~ 18626514 (-) True XLOC_014689
TCONS_00029023 lncRNA downstream 234742 18596786 ~ 18597326 (-) True XLOC_014688
TCONS_00029022 lncRNA downstream 346187 18484706 ~ 18485881 (-) True XLOC_014687
TCONS_00030200 lncRNA upstream 15643 18860056 ~ 18862120 (-) False XLOC_014697
TCONS_00030201 lncRNA upstream 15643 18860056 ~ 18863204 (-) False XLOC_014697
TCONS_00029043 lncRNA upstream 34589 18879002 ~ 18880124 (-) True XLOC_014698
TCONS_00029044 lncRNA upstream 98313 18942726 ~ 18953206 (-) True XLOC_014699
TCONS_00029048 lncRNA upstream 171782 19016195 ~ 19023360 (-) True XLOC_014700
TCONS_00029032 mRNA downstream 149558 18657230 ~ 18682510 (-) False XLOC_014690
TCONS_00029031 mRNA downstream 149558 18657230 ~ 18682510 (-) True XLOC_014690
TCONS_00029030 mRNA downstream 164938 18657029 ~ 18667130 (-) False XLOC_014690
TCONS_00029028 mRNA downstream 205076 18617757 ~ 18626992 (-) False XLOC_014689
TCONS_00029027 mRNA downstream 205095 18617757 ~ 18626973 (-) False XLOC_014689
TCONS_00029039 mRNA upstream 2510 18846923 ~ 18855513 (-) False XLOC_014696
TCONS_00029040 mRNA upstream 3011 18847424 ~ 18855717 (-) False XLOC_014696
TCONS_00029045 mRNA upstream 145498 18989911 ~ 19026028 (-) False XLOC_014700
TCONS_00029046 mRNA upstream 147029 18991442 ~ 19026028 (-) False XLOC_014700
TCONS_00029047 mRNA upstream 147058 18991471 ~ 19025998 (-) False XLOC_014700
TCONS_00029018 other downstream 413305 18417181 ~ 18418763 (-) False XLOC_014685
TCONS_00028989 other downstream 1173895 17518061 ~ 17658173 (-) False XLOC_014675
TCONS_00028991 other downstream 1305333 17518733 ~ 17526735 (-) True XLOC_014675
TCONS_00028976 other downstream 1621333 17208245 ~ 17210735 (-) True XLOC_014667
TCONS_00028972 other downstream 1832326 16999627 ~ 16999742 (-) True XLOC_014664
TCONS_00029041 other upstream 9644 18854057 ~ 18855476 (-) True XLOC_014696
TCONS_00029042 other upstream 17326 18861739 ~ 18861880 (-) True XLOC_014697
TCONS_00029050 other upstream 442750 19287163 ~ 19339287 (-) False XLOC_014701
TCONS_00029060 other upstream 865514 19709927 ~ 19710042 (-) True XLOC_014709
TCONS_00029066 other upstream 884277 19728690 ~ 19728755 (-) True XLOC_014711

Expression Profile

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