RNA id: XM_036975204.1


Basic Information

Item Value
RNA id XM_036975204.1
length 2326
RNA type mRNA
GC content 0.51
exon number 17
gene id LOC110504742
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 74165518 ~ 74438687 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGAGGAAGGAGTTGAGGAGGAGGCTATTGCTTTCAGACCCTGCCCCAGGGGCTGAATGGGTGCAAGATGAGAAGTAGAAAGAGACACTCCCTGGGAAGGCCTTTCACTAGGAACCTGTTGCTGCAGATGTCCATTCAAAACCCAGACCCAGCTGAAGAGAGAACGATATATAGAGACCACACTCCTGCACTGAAAATTGAGAGAAGAGCGAGCCAGACTCCATCACTACAAAATTGAGAGAAGAGCGAGCCAGACTCCATCACTAAAAATTGAGAGAAGAGCGAGCCAGACTCCATCActgaaaagagagaaagatagagcaaCCACAGACTCTTTCAACTGAAAAGAGAGAAAAACCTCCACTTTCCTTCTCTGAAAGCCACAGAAAGAAGGAGAGCGACATAGAGAGAGACCCagcctgaaaagagagagagagaacaatgggtGCTATTGTCAGGCCTTAGTCCCTTTCACTGCCGTTTCTCCAGGCTCCAGACTCCTGCAGTAGGCTATCTCTTTACGACAAAATCAACACAAAGTCATCTCCCCAGATCAGAAACCCCCCCAGCAATACTGTACAGAGGGCCAAGGAGGTACTGGAAGAGATCTCTTGTTACCCAGACAACCACGACGCCAAGGAGCTAAGACGGATACTGACCCAGCCGCACTTTATGGCCTTGCTCCAGACCCATGACGTGGTGGCCCATGAGGTGTACAGTGATGAGGCTTTGAGGGTGACCCCCCCGCCCACCTCACCCTACCTGAACGGAGACTCTCCCGAGAACACCAACGGAGACATGGACCTGGAGAACGTGACGAGAGTACGCCTGGTTCAGTTCCAGAAGAACACTGATGAACCTATGggcatcaCGCTGAAGATGAACAATCTGAACCACTGTATCGTAGCCAGGATAATGCACGGAGGAATGATCCACAGACAAGgAACGCTGCATGTAGGAGATGAGATCAGAGAGATCAACAGCATCAGTGTAGCCAACCAGACAGTAGAGCAACTACAGAGGATGCTGAAAGAGATGCGAGGCAGCATCACCTTTAAGATAGTGCCAAGCTACCGGACACAAGGATCTTCCTGTGAGAGAGAGTCCCCCTCCAACTCCAGGCAATCCCCTGCCAATGGCACTGGCCACTCCAGTGTTAACAGTTTTATCTTGGATCTGCCGTCTACCGTCCAACCCAAGAGTCGACAGATGGTCATACCCAGACCTCCAATCAAGGATAAAATGTCCGTCAAGATCTACGTAAGGGCCCAGTTTGAGTATGACCCCTCCAGAGATGACCTCATACCCTGCAAGGAGGCTGGGATTCCCTTCCGGGTTGGTGACATCGTCCAGATCATCAGTAAAGATGACCACAACTGGTGGCAGGGGAAGCTGGAGAACACTAAGAACGCCACCGCAGGGCTCATACCCTCACCAGAACTTCAGGAGtgGCGTGTGGCGTGTATAGCCATGGAGAAGACCAAGCAGGAGCAGCAGGCCAGCTGTACCTGGTTTGGCAAGAAGAAGAAACAGTACAAAGACAAATACCTGGCCAAGCACAACGcagTATTCGACCAATTAGATCTTGTCACGTATGAAGAGGTAGTGAAACTGCCTGCGTTCAAGAGGAAAACACTAGTCTTGTTAGGGGCCCATGGAGTGGGCAGAAGACACATCAAGAACACACTAATCACAAAACACCCCGACAGATTTGCCTACCCAATCCcacatACAACCAGACTTCCTAAGAAGGACGAGGAAAACGGGAAGAACTACTACTTTGTGTCACATGACCAGATGATGCAGGACATCAGTAACAATGACTACCTGGAGTACGGTAGTCACGAGGACGCCATGTACGGCACGCGGCTAGAGACCCTCCGCCAGATCCACGAGCAGGGACTCATCTCCATACTGGACGTAGagccacagGCCCTGAAGGTCCTGCGGACAGCGGAGTTCGCTCCTTACGTTGTTTTCATTGCTGCACCAACCATTACCCCTGGCATCAATGAGgacgAATCATTGCAGCATCTTCAGAAGGAGTCAGAAATTCTCCAGAAGACCTATGCCCATTACTTTGACCAGACCATAATCAACAACGAGAtagatgagaccatcagacaccTAGAGGAGGCTATAGACCTGGTCTGTACCAACGCACAGTGGATCCCTGTGTCCTGGGTCTACTGAGGAAAAAACAcaaagccctcctctcctctcctcctctcctctcctctcctctcctctcctcttctttctcctcctctcctctcctctcctcctctcctctcctctgctttctccccctctcctctcgtcctct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU336133 lncRNA downstream 52219 74110956 ~ 74113300 (-) True G296267
TU336073 lncRNA downstream 155843 74009319 ~ 74009676 (-) True G296213
TU336066 lncRNA downstream 182141 73983102 ~ 73983378 (-) True G296206
TU336060 lncRNA downstream 187571 73977611 ~ 73977948 (-) True G296203
TU336001 lncRNA downstream 200647 73963300 ~ 73964872 (-) False LOC110520576
TU336227 lncRNA upstream 66449 74316651 ~ 74316884 (-) True G296359
TU336230 lncRNA upstream 69479 74319681 ~ 74321048 (-) False G296362
TU336232 lncRNA upstream 69479 74319681 ~ 74320432 (-) True G296362
TU336233 lncRNA upstream 71423 74321625 ~ 74321868 (-) True G296363
TU336234 lncRNA upstream 71857 74322059 ~ 74322265 (-) True G296364
XM_021597965.2 mRNA downstream 58279 74104520 ~ 74107240 (-) True LOC100136284
XM_021597964.2 mRNA downstream 136697 73985901 ~ 74028822 (-) True LOC110520577
XR_005051412.1 mRNA downstream 187968 73977380 ~ 73977551 (-) True LOC118964361
LOC118964353 mRNA downstream 191080 73974330 ~ 73974439 (-) True LOC118964353
XR_005051411.1 mRNA downstream 191904 73973452 ~ 73973615 (-) True LOC118964355
XM_021597975.2 mRNA upstream 223756 74473958 ~ 74475223 (-) True LOC110520583
NM_001124688.1 mRNA upstream 245987 74496189 ~ 74562871 (-) True LOC100136729
XM_021597977.2 mRNA upstream 336457 74586659 ~ 74600282 (-) False LOC110520585
XM_021597976.2 mRNA upstream 336457 74586659 ~ 74645214 (-) True LOC110520585
XM_021597979.2 mRNA upstream 427449 74677651 ~ 74680783 (-) False LOC110520587
TU336000 other downstream 193689 73970482 ~ 73971830 (-) True LOC110520576
TU336013 other downstream 285148 73877719 ~ 73880371 (-) True G296166
TU336010 other downstream 291702 73872973 ~ 73873817 (-) True LOC110520572
TU335922 other downstream 355923 73808482 ~ 73809596 (-) True G296100
TU335928 other downstream 390220 73773154 ~ 73775299 (-) True G296102
TU338161 other upstream 1710345 75960547 ~ 75963074 (-) True G298065
TU338234 other upstream 1804919 76055121 ~ 76057006 (-) True G298131
TU338309 other upstream 1915801 76166003 ~ 76166401 (-) True G298192
TU339219 other upstream 2532641 76782843 ~ 76787731 (-) True G299024
TU340463 other upstream 3586280 77836482 ~ 77839215 (-) True pknox1.1

Expression Profile