RNA id: TU336468


Basic Information

Item Value
RNA id TU336468
length 1727
lncRNA type sense_over
GC content 0.42
exon number 4
gene id LOC110520587
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 74677651 ~ 74680783 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCAATGGAATATGGCACAATCATCCAACACGTCTGACGGGGATATTAATACTTGTGAAACTGCCAATTGTTCGCCTCTTGTACATAAAGTGCTCTACTTTGTGTCTCCCGCCCCAAGACCCAGAGAATGAGGACACATATGAGGTGGTCGACCTGACACAATATGCTAGGCGTCAACAATGGTGGGGCTGCCTATTTGGTGGGAACAATTCGGGTCCTATGGCTGAGAAGTATTCGGTAGCCACACAAATAGCACTGGGTGGTGTGAGTGGCTGGTGTGCGGGATATCTTTTCCAGAAGGTGGGGAAGATCGCAGCCACCGCTGTGGGTGGAGGATTCCTGTTGTTACAGATAGCCAACCACAGTGGCTATGTGCAGGTGGACTGGAAGAGAGTGGAGAAGGATGTCAACAAAGCCAAGAGGCACCTGAAGAAGAAAGCCGACAGGGCTGTACCAGAGCTCAACTCTTTTATCGACCAGTCCACAGAGTTTGTGAAGACAAACATTATCGTCACCAGTGGATTCTTTGGAGGCTTCTTGCTTGGGCTGGCATCCTAAGAACACAACAGGGGCCTGCAGTTTTATATAAGAATCACTTGAGAGGTCTGGCTGTGAAGTGAAATGCCCTTTTAAAAACGTGGTGGGAACAACAAGAACAGATGCACAGCACAATATATCAAATTGAGCCAATTACACAACCCGCAAAAAAGGTAATGTAGTTGtaaatactctgtaatgtgtaCTTACTATGCTGTTTCACAATACCTACCTGTCTATCTACCATGTAATTGCATGGTTTTAGCACCACCTGATAGAAACTGGAATCAAGATATCCTGCTGCTCCACCATATAAACAAAACTGTGTTTCTAGCTAGGCTTTAGCCCCCAACTCAAGGCTATTGGGTACAACCCAAAAGCCAGTGGGTCCTGTGGGAAACGCTGGTCTACAAAACAGTTATTAATTAAAATGCGATAAGAGCACACAGGTGGTGCGACCCTGTAAATGGGATCCAGTGTTCCTGGCTCACTCTGATTCATATATTCATCATATGAACGATAGAAACATACTCACTTCCAATGGCTTTGAGCTGCTGCTGGAGATGGACGTATGtacatatgtaaaaaaaaaaaaaaagaataggaAGATGCAAAACACTGCGATTGATGCTGTATTTATTCAGATCGACTGTGTGGTCTTCAGCAGAACTTCATgcatgtgtacagtatatgtacagtgtACTGTTGCACTTGTTACACATACACACCTAATTGGGCTGCAATGCGGGAACTTATTGATTACATTTGGGTCTAGTTCTTTCGAGTGTTTTCTGGTCAATATAGTCCTACTCCGCAAGTATACCCAAGTCATGCAGTGCACCATGTTTGCACAATATATGCCCTTTTCATTCATTCAAATGAGTTAATACTTCAATCATTTTATATTTATTGATTTAGGATTACCATGACTATCTTTCTTTTGCCTTTACGAGCGGTGCAATATTTGCTTGGAGGTAATTTAGCCTCTTTTGTGTTTTCTCCTTCACAGGAAAGCAATTTACCTTTGTTATTGAATTACAATgctgttgtagtttgtgtatatatTCTTAATATAAAAGACCAAATGCAACCAACAATCATGGCTTTCTTTATTTCAAATGAAAGAATAGGCCTATGTCTGTGTCAAGTTTagctttaaaaaacagattaaaaaaacattGTATCACAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU336412 lncRNA downstream 12682 74664929 ~ 74665246 (-) True G296521
TU336449 lncRNA downstream 29939 74647692 ~ 74647989 (-) True G296553
TU336426 lncRNA downstream 64717 74608492 ~ 74613211 (-) True G296532
TU336383 lncRNA downstream 152088 74523065 ~ 74525840 (-) True G296494
TU336369 lncRNA downstream 177394 74497822 ~ 74500534 (-) True G296481
TU336529 lncRNA upstream 76825 74757136 ~ 74761777 (-) True G296622
TU336536 lncRNA upstream 82940 74763251 ~ 74764088 (-) True G296625
TU336562 lncRNA upstream 107268 74787579 ~ 74787789 (-) True G296646
TU336566 lncRNA upstream 108346 74788657 ~ 74788872 (-) True G296650
TU336689 lncRNA upstream 120474 74800785 ~ 74887034 (-) True G296760
XM_021597976.2 mRNA downstream 32714 74586659 ~ 74645214 (-) True LOC110520585
XM_021597977.2 mRNA downstream 77646 74586659 ~ 74600282 (-) False LOC110520585
NM_001124688.1 mRNA downstream 115057 74496189 ~ 74562871 (-) True LOC100136729
XM_021597975.2 mRNA downstream 202705 74473958 ~ 74475223 (-) True LOC110520583
XM_036975204.1 mRNA downstream 427726 74165519 ~ 74250202 (-) True LOC110504742
LOC118964358 mRNA upstream 197237 74877548 ~ 74877702 (-) True LOC118964358
XM_036975210.1 mRNA upstream 211410 74891721 ~ 74892320 (-) True LOC118964328
XR_005051381.1 mRNA upstream 234908 74915219 ~ 74929805 (-) False LOC118964329
XM_036975220.1 mRNA upstream 854703 75535014 ~ 75579461 (-) False LOC110520594
XM_036975221.1 mRNA upstream 854703 75535014 ~ 75579461 (-) False LOC110520594
TU336182 other downstream 438133 74239187 ~ 74239795 (-) True G296315
TU336000 other downstream 706098 73970482 ~ 73971830 (-) True LOC110520576
TU336013 other downstream 797557 73877719 ~ 73880371 (-) True G296166
TU336010 other downstream 804111 73872973 ~ 73873817 (-) True LOC110520572
TU335922 other downstream 868332 73808482 ~ 73809596 (-) True G296100
TU338161 other upstream 1280236 75960547 ~ 75963074 (-) True G298065
TU338234 other upstream 1374810 76055121 ~ 76057006 (-) True G298131
TU338309 other upstream 1485692 76166003 ~ 76166401 (-) True G298192
TU339219 other upstream 2102532 76782843 ~ 76787731 (-) True G299024
TU340463 other upstream 3156171 77836482 ~ 77839215 (-) True pknox1.1

Expression Profile