RNA id: XM_036975220.1


Basic Information

Item Value
RNA id XM_036975220.1
length 1988
RNA type mRNA
GC content 0.49
exon number 15
gene id LOC110520594
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 75535014 ~ 75579525 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGGTTGGTGGGTTCTCCTGAAGAGCTGTAGGCTAATTCGTGATGTAACAGGAAGTAGACTAATGCGAATGCCTCCCACAATCTGACAGCGGCTCCAGTCCGACACTTTATTCATTGAGTGTTGATACCCTTTAGGTTTGGTTCACTACCATTGCTGCGGAGGTTGcatttgtggggaaaaaaagcTGTCGCTGGAGTGTTTGGTCGGTTAATGTGACTTTCTAAATCGCGGTAGCATTGGATTGTGAACTAATCGCATCAGTCATTTAGCACCAGGGATACCTCCTTGAGACGTCCTCCTTCTCAACGAATGTCCGGAATGCCTTCACTGGCCTTGTCTTAGTTAGCCTTCTATGCCCAAGGCAAACAATGATCCAGCATGATGAGGCCCGTCCGTTCTGTCCTGCTAAAATGGATGCCGCCTGAGATGTGAGGCCAGGAACGTCCATGATCATATGATCGATAGTCATTAAAGAGGGAGAAATAACCAGAAGAGTGGATCGTTTGATATGCCAAAAAAGAAGATGGATTGTTTTGGGTACTGTTGGATGGTCATCTGTCTCCTACTGGGCACTGCTACTGAGATCTTAGTTGCGGCTAGCCCAGAGGTGAACAGTACCCAGCAGCACCTACAGCTGAATGTCTACCACGATATAGGACTCACCAGGAACAAGATTGTGACAGCCCAGTTCGAGTGCTACCAGAAAATCATGAAGGATAACGACCACAACAAAAtagGGCCAGTGTGTAACCGGACCTGGGATGGATGGCTGTGCTGGGACGACACAGAGGCAGGCTTCACTTCAGAGCAGCACTGCCCTGACTACTTCCAGGACTTTGACCCCTCAGAAATGGTGACAAAAATCTGCAGTGAGAACGGACACTGGTTTCTGCATCCCGACAGCAACCGAACGTGGACTAACTACACGCGATGCAACGAGCACACCAAAGAAGGCAGGATGACTGCCATGAATTTATTCTACTTGGCTCTCATTGGCCACGGCTTGTCACTGATATCCCTATTCATTTCCCTGGGAATATTTTTCAATTTCAAGAGTTTAAGTTGCCAGAGGGTCACTCTCCACAAAAACCTCTTCTTCTCCTTTGTTTTGAACTCGGTCATCACCATCATCTGGTTGACCGCTGTGGCGAATAACCAGGAACTGGTACAAAGAAACCCTACAAGCTGTAAAGTGTCCGTGTTCATCCATCTTTATCTGTTTGGCTGCAACTACTTCTGGATGCTATGTGAAGGGATATACCTGCACACCCTCATCGTTGTTGCCGTGTTCGCTGAGAAACAGCACTTGATGTGGTATTATCTCCTCGGCTGGGgCTTTCCTCTAATTCCAGCATCTATACATGCGATCGCTCGCAGTTACTACTACAATGACAATTGTTGGATAAGCTCCAACACTTCACTCCTCTACATAATCCATGGGCCTATCTGCGCTGCTCTGTTGGTGAACCTGTTCTTCCTGTTGAACATTGTGCGTGTCCTGATCACCAAGTTGAAGGTGACCAACCAGGCTGAGTCCAGCCTCTACATGAAGGCCGTGCGCGCCACCCTGATTCTGGTACCTCTCCTGGGCATCCAGTACGTCCTGTTGCCCTACAAACCAGAGGAACGAGTCTCCTCTGAGATCTACGACTACATCATGCACATCTTAATGCATTATCAGGGGCTGCTGGTGGCCACCATCTTCTGCTTCTTCAACGGAGAGGTGCAAGGTGTTCTGAGGAGACATTGGAAACAGTACCGTATGCAGTTCGGGAGCACCTTGACCCACTCGGATGCCATGCGGTCCGCCTCATACACAGCCTCGTCCATCACCGATGTCCAGGGCTGCTACAGCATCGACAGCAACACAGAACACTTGAATGGCAAAGGGGGCTGCCTTGACATCGAGACCTCCATCTTAAAATCGGAGAACCCGTTTGCCTGAAGAAAGGCTAACTCTGCTGTGTATTTGGGaatggaggggag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU337707 lncRNA downstream 95814 75430744 ~ 75439200 (-) True G297635
TU337705 lncRNA downstream 103147 75428272 ~ 75431867 (-) False G297635
TU337655 lncRNA downstream 184609 75349368 ~ 75350405 (-) True G297587
TU337627 lncRNA downstream 240638 75294083 ~ 75294376 (-) True G297561
TU337605 lncRNA downstream 284685 75249684 ~ 75250329 (-) True G297540
TU337995 lncRNA upstream 293440 75872901 ~ 75873732 (-) False G297907
TU337996 lncRNA upstream 293440 75872901 ~ 75873384 (-) True G297907
TU338147 lncRNA upstream 361590 75941051 ~ 75941296 (-) True G298051
TU338149 lncRNA upstream 364964 75944425 ~ 75944653 (-) True G298053
TU338150 lncRNA upstream 366057 75945518 ~ 75945778 (-) True G298054
XR_005051381.1 mRNA downstream 605209 74915219 ~ 74929805 (-) False LOC118964329
XM_036975210.1 mRNA downstream 642694 74891721 ~ 74892320 (-) True LOC118964328
LOC118964358 mRNA downstream 657312 74877548 ~ 74877702 (-) True LOC118964358
XM_021597979.2 mRNA downstream 854231 74677651 ~ 74680783 (-) False LOC110520587
XR_005051380.1 mRNA downstream 854231 74677651 ~ 74680783 (-) False LOC110520587
XM_021597988.2 mRNA upstream 2571 75582032 ~ 75628907 (-) False LOC110520593
XM_036975222.1 mRNA upstream 2571 75582032 ~ 75628909 (-) True LOC110520593
XM_036975225.1 mRNA upstream 275272 75854733 ~ 75919692 (-) True LOC110520599
trnaa-ugc-5 mRNA upstream 310904 75890365 ~ 75890437 (-) True trnaa-ugc-5
XM_036975230.1 mRNA upstream 523376 76102837 ~ 76118153 (-) False LOC110520602
TU336182 other downstream 1295219 74239187 ~ 74239795 (-) True G296315
TU336000 other downstream 1563184 73970482 ~ 73971830 (-) True LOC110520576
TU336013 other downstream 1654643 73877719 ~ 73880371 (-) True G296166
TU336010 other downstream 1661197 73872973 ~ 73873817 (-) True LOC110520572
TU335922 other downstream 1725418 73808482 ~ 73809596 (-) True G296100
TU338161 other upstream 381086 75960547 ~ 75963074 (-) True G298065
TU338234 other upstream 475660 76055121 ~ 76057006 (-) True G298131
TU338309 other upstream 586542 76166003 ~ 76166401 (-) True G298192
TU339219 other upstream 1203382 76782843 ~ 76787731 (-) True G299024
TU340463 other upstream 2257021 77836482 ~ 77839215 (-) True pknox1.1

Expression Profile