RNA id: XM_021597988.2


Basic Information

Item Value
RNA id XM_021597988.2
length 2279
RNA type mRNA
GC content 0.40
exon number 6
gene id LOC110520593
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 75582032 ~ 75628909 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGGATGATCAGCTACCATCATCAGTCTTTTAAACAAAAGTTCAAGAAGGTTTCACAGCaactttactgtagtctacttcCCCGACCGCTGACATGTCTTCAATGAATAGCTGGTGGATTACATGCATTGTTTTACTTCATTCCGCTTATTTGGGATCTTGTGATTCAGACTCTGGAATAGCAGATGGAGCCCAGCCTGAGCTCTTCATTTTCCACCAGTCGTGCGCCCTGAAGAAGGACGAAGGGCCCTGCAAGGCATTAAAGGAGCGTTTCTACTTCGACATAGACACGGGCCGCTGTGAGGCCTTCGAGTTCGGCGGCTGCAGAGGCAACGCCAACAATTTTGAGACCTTGGAGGCGTGTGAGGAAATGTGCCTGGTGTCTGTTGACAAGAGTCCCTGTCACCTGGAGGAGGCTCCTGGGCCATGTCGAGGTCTGGTAACTCGCTACTTATTTGACAACCAGAGCCAGGAGTGCAAGCACTTCTACTATGGAGGCTGCTTCGGCAATGCCAACAACTTCAAGAGTATGAAAGAGTGCCAGGCTAGATGCCAGAACCCAGAAAACCCCACTGTGGCCCTTAAATTGGATGTGGCCCCTAAATTGGAGGTCACCGTCCCAGAACCCCATAGCCAGCCTAGTGTGCAGTCTCTCAAAGTAACTGACTTCAATCCTCCGGACTTGTGTCTCAGTCCCATTGACAAGGGCACAACatgtgatggagaggagagaactgagAGGAGATACGTGTACAACCCCAAGACAAAGAGATGTCAGTCGTTGCGCTACAATGGCTGCGGGGGCAACAAGAACAACTTTGTCCACAAGAGACACTGCATGAAGATGTGTATGAAGCCAGATCACCATCACAAAGGGAGGGTCATTCGTATAAAGAAGAAGAACAGCAACATCTTGTTTCGATCTGTCTAAATTAAGGCTTCATATTATACCCTTCCTACTTCCTATTAAACCCTTCCTACTTCCTATTAAACACTTCCTACTTCCTATTAAACCCTTCCTACTTCCTATTAAACCCTTTCTACTTCCTATTAAACCCTTCCTACTTCCTATTAAACCCTTCTTACTAATATTAAACCCTTCCTATTAATGTTAAACCCTTCCTACTTCCTATTAAACCCTTCCTACTTCCTATTAAACACTTCCTACTTCCTATTAATATTAAACCCTTCCTACTTCCTATTAAACCCTTCCTACTTCCTATTAAACCCTTCCTACTTCCTATTAAACCCTTCCTACCTCCTATTAAACACGTCCTACTTCTATTAAACCCTTTCTACTTCCTATTAAACCCTTCCTACTTCCTATTAAACCCTTCTTACTAATATTAAACCCTTCCTACTAATATTAAACCCTTCCTACTTCCTATTAAACCCTTCCTACTTCCTATTAAACCCTTCCTACTTCCTATTAAACACTTCCTACTTCCTATTAATATTAAACCCTTCCTACTTCCTATTAAACCCTTCCTACTTCCTATTAAACCCTTCCTACTTCCTATTAAACCCTTCCTACCTCCTATTAAACACTTCCTACTTCCTATTAAACCCTTCCTACTTCCTATTAAACCCTTCCTACTTCCTATTAATATTAAACACTTCCTACTTCCTATTAAACCCTTCCTACTTCCTATTAATATTAAACCCTTCCTACTTCCTATTAAACCCTTCCCACTTCCTATTAAACCCTTCCTACTTCCTATTAATATTAAACCCTTCCTACTTCCTATTAAACCCTTCCTACTTCCTATTAAACCCTTCCTACTTCCTATTAAACCCTTCCTACTTCCTATTAATATTAAACCCTTCCTACTTCCTTTTAAACCCTTCCTACTTCCTATTAAACCCTTCCTACTTCCTATTAAACCCTTCCTACTTCCTATTAATATTAAACCCTTCCTACTTCCTTTTAAACCCTTCCTACATACACTACTTTTGAATGAGTCTTTATTTATATCATTCTTATTTGACTTTGGTATGTCCTTGTAGTCTTGCAGCAATTGTATCAAAGGCTTGTTTTGGCCTATTGTGTGATGTTGTATTGCTCATTGTAACCTTTTAACACTTTGTAAGAAGATGTTTTTAGTAATATCAcaattgtatacattttttttactgtCACATACCAAATACCAGTCTATAATTGTATTTTTCTTTCTTCCTGAGGACACCAGACAAGTTGTTTTATTGACAAATGATGAACATTCATTATCCCAAAAGCACTGTACATGTAATATCATTCAATAAAGTACATTATCTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU337806 lncRNA downstream 7410 75574201 ~ 75574622 (-) True G297725
TU337788 lncRNA downstream 37163 75544488 ~ 75544869 (-) True G297710
TU337707 lncRNA downstream 142832 75430744 ~ 75439200 (-) True G297635
TU337705 lncRNA downstream 150165 75428272 ~ 75431867 (-) False G297635
TU337655 lncRNA downstream 231627 75349368 ~ 75350405 (-) True G297587
TU337995 lncRNA upstream 243994 75872901 ~ 75873732 (-) False G297907
TU337996 lncRNA upstream 243994 75872901 ~ 75873384 (-) True G297907
TU338147 lncRNA upstream 312144 75941051 ~ 75941296 (-) True G298051
TU338149 lncRNA upstream 315518 75944425 ~ 75944653 (-) True G298053
TU338150 lncRNA upstream 316611 75945518 ~ 75945778 (-) True G298054
XM_036975219.1 mRNA downstream 2507 75535014 ~ 75579525 (-) True LOC110520594
XM_036975220.1 mRNA downstream 2571 75535014 ~ 75579461 (-) False LOC110520594
XM_036975221.1 mRNA downstream 2571 75535014 ~ 75579461 (-) False LOC110520594
XR_005051381.1 mRNA downstream 652227 74915219 ~ 74929805 (-) False LOC118964329
XM_036975210.1 mRNA downstream 689712 74891721 ~ 74892320 (-) True LOC118964328
XM_036975225.1 mRNA upstream 225826 75854733 ~ 75919692 (-) True LOC110520599
trnaa-ugc-5 mRNA upstream 261458 75890365 ~ 75890437 (-) True trnaa-ugc-5
XM_036975230.1 mRNA upstream 473930 76102837 ~ 76118153 (-) False LOC110520602
XR_005051382.1 mRNA upstream 473930 76102837 ~ 76118153 (-) False LOC110520602
XR_005051383.1 mRNA upstream 473930 76102837 ~ 76118153 (-) True LOC110520602
TU336182 other downstream 1342237 74239187 ~ 74239795 (-) True G296315
TU336000 other downstream 1610202 73970482 ~ 73971830 (-) True LOC110520576
TU336013 other downstream 1701661 73877719 ~ 73880371 (-) True G296166
TU336010 other downstream 1708215 73872973 ~ 73873817 (-) True LOC110520572
TU335922 other downstream 1772436 73808482 ~ 73809596 (-) True G296100
TU338161 other upstream 331640 75960547 ~ 75963074 (-) True G298065
TU338234 other upstream 426214 76055121 ~ 76057006 (-) True G298131
TU338309 other upstream 537096 76166003 ~ 76166401 (-) True G298192
TU339219 other upstream 1153936 76782843 ~ 76787731 (-) True G299024
TU340463 other upstream 2207575 77836482 ~ 77839215 (-) True pknox1.1

Expression Profile