RNA id: XM_036975231.1


Basic Information

Item Value
RNA id XM_036975231.1
length 10239
RNA type mRNA
GC content 0.50
exon number 32
gene id LOC110520604
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 76520204 ~ 76857463 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cTGTAGCtagtactactagtactactagtgCACAGTGCTCATAGTcatgttttttcttttttcttcacTTTCAAGCCTGCCTTTTCCTGAACAGCGGGAAAACAGTTCGATGTGGGATTATGCATGGGGTTTAGTGGAAAACGGGAACAAAATTGGGTGCAAGACATGGAGTGTGAAATTTAGAGTGACCTGTTTATAGAATGCGTAACCGTTTTATAAAAGTGCTAGCGATATCGCGTACTATTTGAATAATTTCATCAAATTAGCAGGAACACAGGAGCGCAGTTTTACCTGCTTCAGTAAAGGGCCTGTGAGAATTCACTATGCGGAGTGAAAAACGTAGCTCTGAAATATTACGTTTTTGAATGGGTCCACGCGACTCTGATCTGAAGTTGCCTGGATGGGATGCACAGTGAGTTTCATCTGTTGTGAAGACGACCTCCTACAGATTTCTCCCCACCAACATGACAAAAAGAAAGAGAACAAGAAACTGTTGAAAAAGCCTGAGGAGTTTGAGGGGATCCATTCACACACCTTTCGGGTGAAGACGTTCAAGAAGAGCAAGCACTGTGGCGTGTGCAAACAGACCGTCAGCCAGGAGGGGCTAATTTGCAAAGTGTGCCGGCTGACTTGCCACAAGACATGTGAAGTGAAGGCACCTGGTAACGACATCCCCCTGAAGCATGTAGAGACCTTGGGCTCCACAAAGTCCTCCAAGAGTATGGAGTCTCCACGCATACCATCAAGGAGTGTGAGTCTGCTACAGGCCCTGGAAGAGAACTATGAGTTGGACCTGGTCTACATCACTGAGAGGATCATCTCAGTCTCCTTCTCCAGCTCTGCGGATGAGAACAGCTACTCTGCAAACCTCCGCGAGGTGGCTTCCATGCTGCGCTCCAAACACCAAGACAACTACCTGCTCTTCAACCTCAGCGAGAAACGCTGTGACATCAACCAGCTCAACCCAAAAGTGTTGGACTTTGGCTGGCCGGACCACCACGCGCCTGCCCTGGATAAGATCTGCACTATCTGTAAGGCTATGGACAGTTGGCTGAGTGCAGACAGTCACAATGTAGTAGTGATACACAACAAGGGGAACCGAGGGCGAACAggagtggtggtggcagcatacaTGCATTACAGCAACATATCAGCCAGTGCCGACCAGGCCCTGGACAGGTTCGCCATGAAGAGGTTCTATGAAGACAAAGTACTTCCTGTGGGTCAGCCGTCTCAGAAGAGGTATGTACAGTACTTTAGCGGCCTTCTTTCTGGGAATATTAAGATCAACAACAAACCCCTGTTCCTTCACCACGTCATCATGCACGGCATCCCCAACTTTGAGTCCAAAGGAGGTTGTCGCCCTTTCCTCAAGATCTATCAGGCCATGCAGCCAGTCTACACATCTGGGATCtatagTGTCCAGGGCGACAGCCAGACCAGTGTCTGCATCACCATTGAGCCAGGCCTGCTGCTGAAGGGGGACATTCTGCTGAAGTGTTACCACAAGCGCTTCCGAAGCCCACAGCGGGATGTGATCTTCCGGGTGCAGTTCCATACATGCGCTGTGCACGACTTGGGAATCGTCTTTGGGAAGGATGAGCTCGACGAGACCTTCAAAGATGACAGATTCCCAGATTTTGGAAAGGTGGAGTTTGTTTTTTCCTTTGGTCCAGAAAAAACCAATGGGATGGACCACTTGGAGAATGGGCCCACTGTCTCAGTGGACTACAATACCCAAGATGCTCTAATCCGCTGGGACTCCTATGAGAACCTCGACCAGCATTGTGAGGAGACTATGGATGACGTCATACACACCCAGGGCCCTCTGGACGGCAGCCCCTATGCTAAAGTCCGCAAGAAGGAGTCCATCGAGGATGCAGTCACTGCCAACGACCTCCTGCCCACCGCCACCGAACACGTCCTACCCACGGTTGACCACGCCCTGTCGGTGAGCAGCGACTCAGGCAACTCCACCGCCTCCATCAAGACCGACCGCACTGATGAGCcagccccagcagcagcagccccaCCAGTGAGCCAGCCGCCAGCGGCCCAGGAAGAGGCCCCAGTCTCGGGCACGGTCCTGGCCGTCCAGCTCATCAGTCCCCAGGAGAAGCAGGACCTGGAGCAGCTGCTCAGTGGCCTGGAGGGCCCCATGCATTGCCAGGACTACCTGTCCTCTCCATCGGGCGGAGGGATGGGGATAGGACTAGGGGGAGGGGGAATACTACACCTGGTGCCTGCCCAAGTTCATGTGAATGGCCACAACAGCAGCATGGACAGAGAAACAGATATTCTGGATGACGAGGTGGAACTGCCCACCAGCCAGGAAGGTAACAGCATGGACAGCTTGGGCACTCTGTCATCCGTGGAAGGGAGAGCCACGCCAGCAGACCTCTACTACCAGGCTGAGACGGTTATCAACGGGCATGACAAGGTCCCCTATCTAGAGAGGAGCATCCCAGACAGGCCCCCGGAAAACATTGTCATAAATGTCGCAATAGGCTCACATGATGTGGCTGACCAGGTTCCCGTCACCTTAGTGCGAAGCCTCTGCTCAGCTCAGGATGGGACAGGTGAGTCAGTTCCCCCTGCGAGCGATTACATTATCAGCCAGAATGGAAACCTGTATTGCTCACAGTCATTCGGTGCAGACCAGAATCCCCTCCCTCGAGCGCCAGCACGCAACACCAGCAGCCGTAACGCCGTCCAACGTGGGCTCAACGTGTGGCAGCAATATGGCGTCCCAGAAGAGCCGGTGATGGACGGGGTGTATTTTggctctcctccaccctccatgcCTCTACAGAGCCACCACAGCATGCCCCACTTCCCCCACCAGCAGACTGCCTCACAGCAGGAGATTGAGCAGTCCATTGAGGCGCTCAACCTGCTGATGCTGGACCTGGACCCCGGACGCCTGTTGGGGAAAGTGCCAAAGTCCCAGAGTGTCCCGGGAGATAACAAGGAGGTGGTGACCACACAACCATCCTTTTCCCAGTCCCTGGCCAGGCCCTCCTACCAGGCTGACTCAGCTATCTCAGGAAGCCCTGCACCCAGCCTAGCTCAGGTCATGCTGAGGTCCTCCCCTTTCCAGCCGTCCACGTCTCCAGAGCCCTCTGCCATCCAGAGACCAACAGCCATCTACCACCCTGGTCCCTCTGTAGCCCCCATCCCTGGCTTCCCCACTGAACCTTCTAGCCAAGGGGCAGCCAGAACCAGCTCTCCCACCCAGGTCCCCAGTAGCGTGGGCCAGCTGCAGCTGAAACCCATCAACGTGTACCCCCCCAGCATCGTGTACCCGTCCCTGTCCTCTGAGCTCCGGGAGCCCCAACAGAGCCCCAGTGCCACGTTCTCATCACCCAATCCCAGCGATGCAGAGCCTGATGAAGCGTTCAACGTGGAGGGCCTAGTAGCCCAGCGTGTGTCAGAGTACTCGGCCCGAATGCAACGCCGACTCACGTCTCCTCAGTCTGAGCAccgtcactccctctccctctctgGTGTCCAGTCTTGTGGGACGTCATTGGACGAGGCATCGGCCCCGCCCCATCACCGCACCACTAGTGAGAGACAATGCATCAACGGCCACGACGAAAGCTCTTCCTACCAACCCCCGGTCCGCTCCCCTATTCGTTGCGTCTCACCGGAGTTCGTCAACACCATAGCGCTGAATCCCGGGGGGCGTCCCAAGGAGAGACACATCCACAGCTACAGAGAGGCCTTTGAGGAGTTGGATGGAGGCCAAATCAGCCCCACGCCCACTGTTGGTGGTGAGGTGTTCCCCCATACCCCTGCCTTCCCCGTCTCACCGCAAACCCCTTACTTCAACCTGTGCCAAGCTCGTTCCCCTCCAGGTCTGATGAagacccctctctctgccttggGCCTCAAACCCCACAACCCAGCTGAGATCCACCTCAACCAGAGTGGATCAGAGCCGTTGAGCTACGTGGAGTCAGTGGCCAGATCCGCTGTGGCCGGTGGGGGACCAGCAGGACCCCCCGTGACCCTCACCCCCCCAGGATGGACCTTGGCTAGGCAGACGAACCCTGACCCCTCCCCAACCCTCAACCCCCTATTGTCTAGCTGCAGCCCCATCCACAGATCAGAGGGAGAACACCCGTTGGCTGACAGCAGTGCGATCATCCCCTCGCAAGCGTCCATTGACTCCAGCTTACGCTCCTTTCCTTCCGAGGGCACGTATCCCATCCACTCCCCCACCCCTATCCCCATTGCCACTCCCACCCCATACCTCCAGGCCCTGGGCTCCCCATCTCCCTTCCTTCAAGCCCTGGGAACCCCCACCTCCTCCTACCTGAGCTCCACCTACCCCACCCTGTCTTACCTGTgttcccccaccaccacaccctcCTGGGACCTGGGTCACAGTGGCCATATGGGGAGCTATGTCTCCCCGGACCCCAGCCCCCCCCCCGCTCCAGCCAGAGGCATCTGCCCGGGAAACCTTGTGGCCATCCTCCCCTCGTTAAGATCAAGAAGTCTCCACACACTGCATCGTGACCCCAACACCTCATCTAGCATCCCCTCCCTTCAACATCGGCAACAGCCCACCAATCAGTGCAGCCCTGTCATGGGCCACCAGCCCGGTCCGGCCAATGGCTTTGTGGAGTTTGGGATCACTGGGATGGTAATGACAGGCAGTCCCGTGTTGGGCCGCCACCACTATAACCCATGTGTGTCCCAGGGGACACAGTCTAGCCCAGTGCTGAGCCAACAACCGTCCCTGATGCAGGCCTCCCAGGACAGCCCCATGCTCAGTTGCCAGCCCTCCCTCACCTACAGCCAACCCATCCAGTCCAGTATCCAGAGTAGTCCGGTGCTGAGCCGACATCCATCCCTCACCTACAGCCAACCCATCCAGTCCAGTATCCAGAGTAGTCCGGTTCTGGGCCGACATCCATCCCTCACCTACAGCCAACCCAACCAGTCCAGTATCCAGAGTAGTCCGGTTCTGGGCCTACATCCATCCCTCACCTACAGCCAACCCATCCAGTCCAGTATCCAGAGTAGTCCGGTGCTGAGCCGACATCCATCCCTCATTCACCAGCAGGGCAATGGTAGTAGTCCTGTGCTGGGCCGACACCCGTCCCTCGGCCAGATGTCACAATGCAGTCCAAGTCTGGACCGACACCCAATGCTGCATAGTAGCGGCTACACCACCCCGGACGAAAGGCAGGGCACCCTGTCCCGTCAGAGCTGCTCCTCTGGGTACAACCCGCCCTCCACGCCCTCCTTCCATGTCTCCAACGCGGGCTATCTGGACGAGGGGATAATGATGGGGGTACGGCAGGGCAGTCCGGCCCCACAGGCTCAGCCCCAGCTACCGGAGAAGAGGCGAATGTCCATTGGGGAGAGGCCCAACGGGGGGCTCTCGTACGGGACACTGAATGGGAAAGTGTCCTCCGCCATGTCGAGTGGAGGCAGCACGCCCAGCACTAGCTACTTTCATACACTGCCAGACTTCTCCAAGCTTAACATGACTGATGGGAGTCCAGAGACCAGGCTGAATGTAAAGTTCGTTCAGGATACGTCCAAGTTCTGGTACAAGCCTGATATCTCCCGTGAACAAGCCATCGGCCTGCTGAGAGAGAAGGAGCCAGGGGCCTTTGTCATCCGGGACAGTCACTCCTTCCGAGGGGCCTATGGCCTGGCCATGAAGgtggcctctcctcctcctcctactgctCAGCATTCCAAGAAAGCTGGTGACATCACTAACGAGTTGgtgaggcacttcctgattgagaCGAGTCCTAAGGGAGTGAAACTGAAAGGATGTCCCAACGAACCTTACTTTGgttgtcTGTCAGCTCTGGTGTACCAGCACGCCATGACTCCACAGGCCCTGCCCTGTAAACTGGTCATCCCTACCAGAGATCTCCACCAGGATGTCCCAGATATCGCCACGCCAACCAACCAGGCTGACTACCTCCTGAAACATGGAGCAGCATGCAATGTGCTGTACATCAACTCGGTGGACATGGAGTCTCTGACGGGACCTCAGGCCATCGCCAAGGCGATCTCGGAGACGATGGCCGCCGCGTCCCCACCCACCGCCACCGTTGTGCACTTCAAGGTGTCGCCCCAAGGCATCACCCTGACGGATAACCAGAGGAAGCGTTTCTTCCGGCGCCACTACCCTATCAACACTGTCACGTTTTGTGATGTCGACCCTCAGGAGAGAAGGTGGAATAAACCTGATGGGGGCACAGCCAAGTTTTTTGGGTTTGTGGCTCGGAAGCAAGGAAGCACAACTGACAACGTCAGTCACCTCTTTGCCGAGATGGACCCCGATCAGCCCGCCAGCGCCATCGTCAACTTTGTCTCCAAAGTGATGAGCGGCTCACAGAAACGATGAGCTGACCTTTTGGCGACCCCTGGCTTTTAGTTATTTTGGGTTGTTGTTCTTTTTAACTACGGAGGGAATATATTTCCTTTTTTTTAGTTTGTATTCTAAGTTTAATCTTAGGTTTCACCTCTTTCCTTCTGATCTCGTcttttacctgtgtgtgtgtgtgtgtgtctttgtttctTCTTGGAAGGACTCCTTCGTGGTGCGAACTAGGGGGGATAGAGGAAGTGCAGTTTGTGGGGTGTGGCTGTGTAAGCTGTTGAATGTTGGCTATGGGAGGCCATTGTGATCTCTCTAGCAGGGCAGCACAAGAACAGGAAGAGGAAATCATGTCAGTGATGATGTCAGTGAGTGTGATGCATGAAAAAGAGAAGAAGTAGTAAAGTTGTGTGATGTAAAGAAGGGTGTGAAGCTGTCGGGTTTTGGACTGTTCAACCAAAGATTTTTAAGAAGCAGCAATGTCACTGAAGGTATGTTTGAAACaatatttggtaaaaaaaaaagaaaaatggcTACTTTatcaaaacatttacattttatgtTCTTTCTATATACAAGtaaatactgtatttattttattcctAAAAAGTTTGCATCTTTGCTTTCTTCGCAAACCGTATTCAAAGAAATTTTTGCATGCTGGCGAGTTTAATCAATGTAAATATCACAGAGTAAATCTCTTGGTAGGGCGTGGGTGACTTGGATGACTTGGGGCCTAAAAATGTTGTTGGATTTTTTTTTAGAGCTTTCTGTagagaaagaaaataaagaaaaaagcaCAGTTGTTCTCTTCAGAACAACAGAAAACATCTGACTTCAGAACATCTGTATTGGTCTCCTCCAACTTCCACTGTTCTCTTCAGAACAACAGAACACATCTGAATTCCACTGTTCTCTTCAGAACAACAGAACACTTCTGACTTTTACTGTTATCTTCCGAACAACAGAACATATCTGACTTCCACTGTTCTCTTCAGAACAACAGAACACATCTGAATTCCACTGTTTTCTTCAGAACAACAGAACACATCTGACTTCCACTGTTCTCTTCAGAACAACAGAACACATCTGACTTCCACTGTTCTCTtcagaacaaacaaacacatcTGACTTGCACTGTTCTCTTCAGAACAACAGAACACATCTGACTTCCACTGTTTTCTTCAGAACAACAGAACACATCTGACTTCCACTGTTCTCTTcagaacaacagaacacaactgacttccactgttctcttcagaacaacagaacacatctgacttccactgttctcttcagaacaacagaacacatctgacttccactgttctcttcagaacaaacaaacacatcTGACTTGCACTGTTCTCTTCAGAACAACAGAACACATCTGACTTCCACTGTTCTCTTCAGAACAACAGAACACATCTGACTTCCACTGTTCTCTTCAGAACAAACGAACACATCTGACTTGCACTGTTCTCTTCAGAACAACAGAACACATCTGACTTGCACTGTTCTCTTCAGAACAACAGAACACATCTGACTTCCACTGTTCTCTTCAGAACAACAGAACACATCTGACTTCCACTGTTTTCTTCAGAACAACAGAACACATCTGACTTCCACTGTTCTCTTCAGAACAAACGAACACATCTGACTTGCACTGTTCTCTTCAGAACAACAGAACACATCTGACTTCCACTGTTCTCTTCAGAACAACAGAACACATCTGAATTCCACTGTTCTCTTCAGAACAACAGAACACATCTGAATTCCACTGTTCTCTTCAGAACAACAGAACACATCTGACTTCCACTGTTTTCTTcagaacaacagaacacaacTGACTTCCACTGTTTTCTTCAGAACAACATAACACATCTGACTTCCACTGTTCTCTTCAGAACAACAGAACACATCTGACTTCCACTGTTCTCTTCAGAACAACAGAACACATCAGCTGTTCTCTTCTGAACAACAGAACACATCAGCTGTTCTCTTCAGAACAACATAACACATCAGCTGTTCTCTCCAGAACAACAGAACACATCTGTATTGGTCTCCTCTGACTTCCAACCTTCTTTTCCCCTCTTCTTTTGAATGGTTGAAGGATGGAGGATAGATAGAAGCTTGTCCAGTTTGGTCCAACTATTCACCTACAAAGGGATATTAGAACCCTGTAATGACGCTGGGAGCCGGCGTCTGTTGTTACCCTTCTAGACCAGCCTGCAAAGCACCCCTCTATGGATACATTTGGTTTTGGCTGATTGGTTCCCATAAgtgccactcctctcctcttcgctGTGCATGTATAAGCATCATGGAAGGTCAGAGTTCACTGCTGATTTTTGAAGAGCGGACGGGCAACGAGAGTCCAGGTTGCTACGACTAAAGCATcaagctctctctcttctccttcggAACATTAAAATTATTCTACCCCTGCAACCGTCCCAGTAAAGATTGAGAGAGTCCACTATCTTTACAGATCAGCCTATCAAACGTGTAACACCCACATCATACCCACAAGTAagctatatacatatacatatacatacatagatatatagatatatataaaacatgtttatttttttgctctgtCACTCTTTTAACTCATATAATAAATTGACATATATAGTCCAACCATAAAGATTACTGAGTGTCGAAAAAATATTATTCTGTACTTTGGCTAAGATTTATAAATCATGAGACTGAACTACATCAATATAAATGGTGTGAAGTGTATGTATTTTAAAGCTTTGCTTTAAAACAATTCACTGCATTACTTTGTTTATGTTATGAGTCTTTGTATAAAGCATCATTTGGTATGGGGGAGAAAGAGCGTCTAGCAAAGTTCTTTGTTGCAAAATTGTgccaacattttaaaaaaaatgtaaaaataaacctGCCTAAAATGGAATGGCCAGAGTTAAGCACTTACACGTCATATGAAATATCAATGCACCTATGTGTAGCTGTGTGTTCACTGCATGTTTGGAGGCCAGATATTCTTTCCGTGACTACTTCCTCTATCTAACATCGCAGGTTTAGTGAAGCACCACCGTATTCAAATCTTAAGCAATTATTCATGTTGTTATGTAGGGCCTACTGCCCTCATGTGGTGAACCAACGTTTGACAACCCATTGTGTTTTTACTCTGGCGTTTTAACTGTGATTTCAGCAATGACCAGCGAAACTCAAATGGCTGAGTATATTATTTTCAGAATATGGAAGACAAGTATTATGTCACTTTTTTTGGCCATTATGATTTTGTGAATGTCCTTACTCAATTGGATTCTGTTTGGAGCAGATTAGTCATACCCCGATGGTCAAATCTACTCCAGTGAAAAAAAAAGAACAAGCATTTACATGTGGCATTCTGTCATGTCAAAATACACACTAAATATTTGCTCGTCCACTTCTGTTACCGCttaatgttttgtttttatgCTCCACTGGGTCTTCTTCCATGACGTCTGTACTCGTTCCATTCTGTTCCAACCGTTCATTCCTCTTCAATGAGAATCCCTCCATTTTAAatgaattgtatttattttttttgatGAGTCTCCACTACTGTAAAACTATATGTGTCGAAAGCATGGTTGATTCTGCATTTTTCTATGAGAAACGTGTGAGAAATGCTTGTCGGGTCAATCCCCCCTCTACCACAAATTGAATGTCAGTCTCACGTTATTTGTCGTGTAAGAAGTCTCTTCTGATGTACATGTGGCCACTTTGAGGAAATAGCCTTAGAATGTGTGCATGAATGTGCTGCGATGCCTGTACAGAAGTGTATGTATTTTCATTTGCTTTATTGTATGGCTTTTGTttctgagaagaaaaaaaacatattaaaagtaatttgtgtt

Function

GO: NA

KEGG:

id description
K18080 TNS; tensin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU338740 lncRNA downstream 29739 76489887 ~ 76490465 (-) True G298608
TU338733 lncRNA downstream 37215 76482790 ~ 76482989 (-) True G298601
TU338720 lncRNA downstream 47414 76472585 ~ 76472790 (-) True G298588
TU338718 lncRNA downstream 48518 76471366 ~ 76471686 (-) True G298586
TU338705 lncRNA downstream 55585 76464316 ~ 76464619 (-) True G298573
TU339445 lncRNA upstream 20931 76878394 ~ 76878649 (-) True G299229
TU339447 lncRNA upstream 21795 76879258 ~ 76879623 (-) True G299231
TU339456 lncRNA upstream 33592 76891055 ~ 76891449 (-) True G299238
TU339457 lncRNA upstream 37276 76894739 ~ 76895279 (-) True G299239
TU339460 lncRNA upstream 42410 76899873 ~ 76901362 (-) True G299242
XR_005039942.1 mRNA downstream 349085 76160117 ~ 76171119 (-) True LOC118944635
XM_036975230.1 mRNA downstream 402051 76102837 ~ 76118153 (-) False LOC110520602
XR_005051382.1 mRNA downstream 402051 76102837 ~ 76118153 (-) False LOC110520602
XR_005051383.1 mRNA downstream 402051 76102837 ~ 76118153 (-) True LOC110520602
XM_036975225.1 mRNA downstream 600512 75854733 ~ 75919692 (-) True LOC110520599
XM_021598002.2 mRNA upstream 8767 76866230 ~ 76869000 (-) True LOC110520605
LOC110520607 mRNA upstream 24027 76881490 ~ 76882509 (-) True LOC110520607
XM_021598009.2 mRNA upstream 221275 77078738 ~ 77082644 (-) False LOC110520611
XM_021598010.2 mRNA upstream 221275 77078738 ~ 77082651 (-) True LOC110520611
XM_036975238.1 mRNA upstream 226790 77084253 ~ 77102682 (-) False LOC110504825
TU338309 other downstream 353803 76166003 ~ 76166401 (-) True G298192
TU338234 other downstream 463198 76055121 ~ 76057006 (-) True G298131
TU338161 other downstream 557130 75960547 ~ 75963074 (-) True G298065
TU336182 other downstream 2280409 74239187 ~ 74239795 (-) True G296315
TU336000 other downstream 2548374 73970482 ~ 73971830 (-) True LOC110520576
TU340463 other upstream 979019 77836482 ~ 77839215 (-) True pknox1.1
TU340453 other upstream 987204 77844667 ~ 77850766 (-) False LOC110520626
TU340455 other upstream 987204 77844667 ~ 77850766 (-) True LOC110520626
TU340551 other upstream 1071023 77928486 ~ 77983204 (-) True G300200
TU340609 other upstream 1177022 78034485 ~ 78035018 (-) True G300251

Expression Profile