RNA id: XM_036975240.1


Basic Information

Item Value
RNA id XM_036975240.1
length 2421
RNA type mRNA
GC content 0.48
exon number 12
gene id LOC110504825
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 77084253 ~ 77102688 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATTTcagccaagagagagaaagagagcgagagtgggaggaagagagagagaggggacctgACATATGGGCCTCAGATCACAGAGACTGCTATCAGGAGAGTGAAAAAgagcaagaaagaaagagagagagcgagaggtctACGtactagaggggagagagagagcgagagagagagagacaacgtgAACTGTACCCAGTCAGAGACATGAATCCCCTCAGCTGGATCGTTGTACTTCTCTTCCTGTTCTACGCTTCCTCTGGGAGCGCCGACGTCAACAGGCACCGCAGACAAGTCCCCACCGGTGGCCAACCAGGTGTGTGTGGCTATGGCAGGAGACTGGTGTGTTGCTATGGCTGGAGAAAGAACAGCAAGGGACAGTGTGAAGCTCAGTGTGAACATGGTTGCAAGCACGGAGAGTGTGCTGGTCCCAACGAATGCAAGTGTTACCCAGGATACACCGGAAAGATGTGCAACCAAGATCTGAATGAGTGTGGCCTGAAGCCTCGCCCCTGTGAGCATCGCTGTATGAACACCCACGGCAGCTACATCTGTTACTGCCTCAACGGATACACTCTGATGCCTGATGGCTCCTGTACCAactcccGGACATGCTCCCTGGCTCACTGTCAATATGGCTGTGAGGATGTACAGGGGGAGATCCGTTGTCTCTGCCCGTCTGCGCGGCTGCAGCTAGGGCCAGACCAGAGAACCTGTGTGGATATTGATGAATGTGTAACAGGAAAGAACCTGTGCCCATACAACAGGCAGTGTGTCAACACGTTTGGCAGCTACTACTGCAAGTGTCAGAATGGCTATGACCTGAAGTATATCAATGGCAAATATGACTGTGTAGACAATGACGAGTGTGCCGCCAACACACACAAGTGCAGCCACCGCGCAGTCTGTCTGAACACTCAGGGATCCTACAAGTGCAAGTCTATCCCAGAGTCCCCAGTGAGGCTGCCAGGGAAGCTGGACAAAGAGCAGATCAAGAACGTCATCCCCGAGCCCAAGGTGACCGTCCCCCCTCAGATCCGCTTGCAGCCCTTCGACTATGACGGGGAGACCTACATGGGTGGCTCAGAGGAGGTGGGCCAGGTGGGCTTTACTGATGtagggaaggaggaagaagaggaagatgaggaggagacagATGTGGACAACAAGCTTAATTCAAGGGGAGATGTTTTCATTCCAGAGGACTTTGAGTCCGTATTTGGTCCTGCAACGGATGTCAAAGAGATCGAAATAGCTCTAGGACAGGAAGAGTTCTTCATGGACTGCAACTTCGATCAGGGCGTGTGTGAGTGGGTGCAAGACAAGGACGATAGCTTTGACTGGAGCGTGTCCTACCATGAAAATGGTATGGAGTACTACATGGCTATGAGTGGTCTTCTGGGAGAGAAGAAGGACCAGGCCAGGCTAAAGCTGCTCCTCAGTGACCGGGCCCAGCAGGGAGGCTTCTGCCTCACCTTCAACTACCGCGTGATGGGCAGCCAGGTGGGCACGCTGCGGGTGCTGTTGAACAACAGCACCGAACTTGTGTGGGAGCAGAGCAGCAGCCGGAGTCAGGATTGGCAGACAGAACTGCTCACTGTAGCCTGGAAGAACCAGGCCCCAGAATCTATCATCTTTGAAGCTGAACGTGGGAATGGAGTTGGGGGAGAGATTGGGCTGGACAACGTGGTGCTGACCTCAGGCTACTGTCAAGGGGAAGACACAGCCATCTTTTAAACTGTGAACTCTGAACCTGTAGAAATCAGTCCAGTGTGGTTGACACAGACCTCAGAGGCAGAGCTAGCATCAGTATCTCCCTTTAGTCTACTCTTTTTGGAGAGCAGACACATCTTCCTAAAACCCAAACTAAGGGTGtatttttttttgctgtactgtacaACAAGTATTAAGAAAAATGTGTATTTGCAGAATGTTTGGGAGTTCAGCCGTCCACATAGGAAAGCGTTGCTGAGGGATTGAGCATCATTGGTATGTGCAGGGATTTCATCTGCAAGTTTACAAGCTTTTCCTTTCATTTGAGCCACCAAGCCAAAGAGAGTAGTGTCCACAAATAAATGATCCACTACATACAGTTCCGTTTTTCAATAATGTTCAcaaatgtttttaaatatattCAATTATTTTCACATAAATGGCAGGATACGGCAGGCTtatctacaacaacaaaaaaacattatatTGTGTTGCTTTTTATTTTTCTAAGTGACATTTTGCAGTTAGctgcaatatataaaaataagaCTTGTGACATGTAGTTAAATGAACCCTAAATGTTAATATCAGGTTCATCAAGAAGTCTTCCCTTGAACCCTACATGCTTTATAATCATAGTACGTGTATGTAACAATGCATAACTGCTGTAAATTGAGCTTTTATAttgtattacatttttaaaaaaaa

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU339556 lncRNA downstream 45351 77034950 ~ 77038902 (-) False G299327
TU339558 lncRNA downstream 46296 77036846 ~ 77037957 (-) True G299328
TU339555 lncRNA downstream 46800 77033186 ~ 77037453 (-) False G299327
TU339557 lncRNA downstream 46800 77034950 ~ 77037453 (-) True G299327
TU339546 lncRNA downstream 62129 77021728 ~ 77022124 (-) True G299319
TU339605 lncRNA upstream 29968 77132656 ~ 77133062 (-) True G299373
TU339534 lncRNA upstream 47304 77149992 ~ 77151643 (-) True LOC110520613
TU339628 lncRNA upstream 72046 77174734 ~ 77177524 (-) False LOC110520616
TU339622 lncRNA upstream 72674 77175362 ~ 77177524 (-) False LOC110520616
TU339633 lncRNA upstream 72674 77175362 ~ 77177524 (-) True LOC110520616
XM_021598010.2 mRNA downstream 1602 77078738 ~ 77082651 (-) True LOC110520611
XM_021598009.2 mRNA downstream 1609 77078738 ~ 77082644 (-) False LOC110520611
LOC110520607 mRNA downstream 201744 76881490 ~ 76882509 (-) True LOC110520607
XM_021598002.2 mRNA downstream 215253 76866230 ~ 76869000 (-) True LOC110520605
XM_036975231.1 mRNA downstream 226790 76520204 ~ 76857463 (-) True LOC110520604
XR_002473013.2 mRNA upstream 47203 77149891 ~ 77151879 (-) False LOC110520613
XM_021598012.2 mRNA upstream 49560 77152248 ~ 77164446 (-) True LOC110520614
XM_021598013.2 mRNA upstream 61954 77164642 ~ 77173237 (-) True tlr7
XM_036975241.1 mRNA upstream 72394 77175082 ~ 77245420 (-) False LOC110520616
XR_005051385.1 mRNA upstream 72394 77175082 ~ 77245420 (-) False LOC110520616
TU339219 other downstream 296522 76782843 ~ 76787731 (-) True G299024
TU338309 other downstream 917852 76166003 ~ 76166401 (-) True G298192
TU338234 other downstream 1027247 76055121 ~ 76057006 (-) True G298131
TU338161 other downstream 1121179 75960547 ~ 75963074 (-) True G298065
TU336182 other downstream 2844458 74239187 ~ 74239795 (-) True G296315
TU340463 other upstream 733794 77836482 ~ 77839215 (-) True pknox1.1
TU340453 other upstream 741979 77844667 ~ 77850766 (-) False LOC110520626
TU340455 other upstream 741979 77844667 ~ 77850766 (-) True LOC110520626
TU340551 other upstream 825798 77928486 ~ 77983204 (-) True G300200
TU340609 other upstream 931797 78034485 ~ 78035018 (-) True G300251

Expression Profile