Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU339534 |
| length | 616 |
| lncRNA type | sense_over |
| GC content | 0.48 |
| exon number | 3 |
| gene id | LOC110520613 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_048567.1 |
| NCBI id | CM023221.2 |
| chromosome length | 85311031 |
| location | 77149891 ~ 77151879 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| species | rainbow trout (Oncorhynchus mykiss) |
| id | name | namespace |
|---|---|---|
| GO:0042989 | sequestering of actin monomers | biological_process |
| GO:0005856 | cytoskeleton | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0003779 | actin binding | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU339605 | lncRNA | downstream | 16930 | 77132656 ~ 77133062 (-) | True | G299373 |
| TU339556 | lncRNA | downstream | 111090 | 77034950 ~ 77038902 (-) | False | G299327 |
| TU339558 | lncRNA | downstream | 112035 | 77036846 ~ 77037957 (-) | True | G299328 |
| TU339555 | lncRNA | downstream | 112539 | 77033186 ~ 77037453 (-) | False | G299327 |
| TU339557 | lncRNA | downstream | 112539 | 77034950 ~ 77037453 (-) | True | G299327 |
| TU339628 | lncRNA | upstream | 23091 | 77174734 ~ 77177524 (-) | False | LOC110520616 |
| TU339622 | lncRNA | upstream | 23719 | 77175362 ~ 77177524 (-) | False | LOC110520616 |
| TU339633 | lncRNA | upstream | 23719 | 77175362 ~ 77177524 (-) | True | LOC110520616 |
| TU339690 | lncRNA | upstream | 122658 | 77274301 ~ 77274642 (-) | True | G299445 |
| TU339691 | lncRNA | upstream | 123057 | 77274700 ~ 77274906 (-) | True | G299446 |
| XM_036975240.1 | mRNA | downstream | 47304 | 77084253 ~ 77102688 (-) | True | LOC110504825 |
| XM_036975239.1 | mRNA | downstream | 47306 | 77084253 ~ 77102686 (-) | False | LOC110504825 |
| XM_036975238.1 | mRNA | downstream | 47310 | 77084253 ~ 77102682 (-) | False | LOC110504825 |
| XM_021598010.2 | mRNA | downstream | 67341 | 77078738 ~ 77082651 (-) | True | LOC110520611 |
| XM_021598009.2 | mRNA | downstream | 67348 | 77078738 ~ 77082644 (-) | False | LOC110520611 |
| XM_021598012.2 | mRNA | upstream | 605 | 77152248 ~ 77164446 (-) | True | LOC110520614 |
| XM_021598013.2 | mRNA | upstream | 12999 | 77164642 ~ 77173237 (-) | True | tlr7 |
| XM_036975241.1 | mRNA | upstream | 23439 | 77175082 ~ 77245420 (-) | False | LOC110520616 |
| XR_005051385.1 | mRNA | upstream | 23439 | 77175082 ~ 77245420 (-) | False | LOC110520616 |
| XM_036975248.1 | mRNA | upstream | 374827 | 77526470 ~ 77538361 (-) | True | LOC110520620 |
| TU339219 | other | downstream | 362261 | 76782843 ~ 76787731 (-) | True | G299024 |
| TU338309 | other | downstream | 983591 | 76166003 ~ 76166401 (-) | True | G298192 |
| TU338234 | other | downstream | 1092986 | 76055121 ~ 76057006 (-) | True | G298131 |
| TU338161 | other | downstream | 1186918 | 75960547 ~ 75963074 (-) | True | G298065 |
| TU336182 | other | downstream | 2910197 | 74239187 ~ 74239795 (-) | True | G296315 |
| TU340463 | other | upstream | 684839 | 77836482 ~ 77839215 (-) | True | pknox1.1 |
| TU340453 | other | upstream | 693024 | 77844667 ~ 77850766 (-) | False | LOC110520626 |
| TU340455 | other | upstream | 693024 | 77844667 ~ 77850766 (-) | True | LOC110520626 |
| TU340551 | other | upstream | 776843 | 77928486 ~ 77983204 (-) | True | G300200 |
| TU340609 | other | upstream | 882842 | 78034485 ~ 78035018 (-) | True | G300251 |
