RNA id: XM_021598012.2


Basic Information

Item Value
RNA id XM_021598012.2
length 3531
RNA type mRNA
GC content 0.42
exon number 2
gene id LOC110520614
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 77152248 ~ 77164446 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAACACATCTGACTAACTATAGCTGCAAGGGGAATTTTAGTTGCACTTCAACGTGTGTTTGAGTAGAGAGGAATTGAGTCAATACACAAGGGACTACATCGATGGAAACAAAAAGAAAATGAACAGTCCTCTGCAGTTTTATTAAACTTTTTTGCTAATTGGTAACTAAACTACCAGGCACAACTTATTTGAAAGGCTTTCAAAATATCACAAGGAATCAACGGTAAACAATATGGCTGCTACCACCTGCTGGTTACAGTTGGCATCATTGTTCCTGTGTCACTTCCTGGTCATAAATACCTCATGTACCTTATGGATGCCATGGCAGTTTCCATGTGACATCAAGGTGGTCAATACTACTAAAACCACAGATGACATCATCTTCAATTGTGAGGAGCGTCGACTGAGAAAGATACCTGATGGCATCACCAGGAATGTGACTGTGCTGGACCTATCAGAAAACAACATCCAGAATGTAACTCATGAATCATTTTCTAACCTGGAGAACCTGACCATTCTCAATCTCAACTGGGTCAACAAAAACCATATAAGTCACATTGCCGAAGGTGCCTTCCAAAATCTGACAAACCTGCAGGACCTAAGGCTTAATGGAAATGGCCTAATTGAAATTCCACAAAACCTCCCACTCAGCCTGGAAATACTCATGCTGGACAATAACAAAATCAATTTCTTGAATATGAGCTACCTCTCTGGTATAACACATGTGAAGGAGCTCTTCTTATCCAAAAACTGCTTCTACTGGAATCCTTGTGAGAATAATTTTACTATAAGAAACGGCACATTCTCAGCATTGATTAACTTAGAAGTTTTGACATTGGCCTTTAATAATTTAACTCAAGTTCCAAAAGAACTTCCCAGTTCTTTAAAAACATTATGGCTTGAATCTAACAAGATACAGTATATTGATAAGGATGATTTCTATGGACTAACCCAtctaaaaacccttgaattacaGGGAAACTGTCCACGATGCTCCAATGCTCCATTTCCGTGTGTCCCCTGTCCCAATATTTTCCTAGATATTCATCCTCATGCATTTCATGGCCTTACAGAGTTACAGACACTGCACCTAGCAGGGAACTCACTCAGTTTCATCAAGAACTCCTGGTTTGAGAGTTTAAACAATCTTAAACAACTGTTCCTTTCTTATAATTTCTTGTCTAAGGCTATGACTGAAGGAACATTTTTTAGCTATCTACCAAAGCTAGAAGTTATGGATTTTTCATTCAATTATGATTTATTAGCCTACCCTGACACCCTACTGCTTTCAAGACAGTTTTCTAAATTGATGTCACTTAGAACACTACATATAGCAGGTTATGTTTTTAAAGAAATCCAGTCAGATACTCTCAGCCCTCTCCATCATCTAAAAAATCTGTCAGCGTTAAACATGGGAATTAATTTCATTGTTCGCTCTAATTCTACCATATTCAGAAAATTCTCACACTTGAAACTAATATACCTCGCAGAAAATAGGCTGTATCCAGTTTCAGTGAGCGATTCACCAGGCCGTGTCTTAGGAAGCAATTCAAAGTCGGAGCTGCACAAGTCACCTCTCACTAGTCACTATTCACATTCAATGGATTTTTCCTTTGAGTTAAAACACGGCCTTGTGAAGCAAGAGTGCTTTGACTCTGGCCGAGTGCTGGTCCTTAGTTCAAATAATATCTTCTTTATTTCTCCAAAGCAATTTGAGGGCTATGGTGACATTGCATGTCTGAACCTATCAAGAAATGGATTTTCTGCAGCACTGAATGGGACAGAGTTCACAACGTTACCAGCCCTAACATATCTGGACCTGTCCTTTAACAAGATTGACCTGGCCTATAACAATGCATTTAAGGAATTACACAAACTACAAGTTTTAGACCTAAGCTACAACAGCCACTATTTTGAAGTGTCAGGTGTGACACATAATTTAAATTTCTTGACAAATCTACCGGCTTTGAAAGTACTGAATATGTCAAACAATAACATTTTTACATTAACAACTAAGCAGATGACAAGCGCATCTTTGAAAGAGCTTCAATTTCGACACAATTTGTTGGCCACATTATGGAAAGAGAGGGACGCCTCATACAACAGACTTTTTAAAAACCTGGTGAATTTAACCTATCTGGATATATCCTTCAACAGCATTGAGAAGATTCCATCAACAGTCTATGACAACTTACCGTATACCCTTCAGAAACTATGCATTAGTCATAATTTACTCACCCATTTTGATTGGGATAAACTGGCTAGTTTCCAACAACTGAATATTCTGGATCTAAGCTATAATTCTTTATATCACATGTCGGCAAATCTCTCCAACTTCACAAATGCACTTCAGATGCTTGACTTGAGCTACAATCGGATTGCTCAACTCTCTGATGGATTTCTTAAGGGTGCTCACCTTCAATTACTTGACCTCAGCCACAACCAACTGACTATCGTCAACGAGACCACCTTCCTATTGGGCCCTGAAAACTACATGAAAACTTTGTCCTTGCAAGGTAATCCATTCCAGTGTACCTGTGACTTATTTGACTTCATCATGTGGATTAAAGATAACAAAGTCGTAGAGATCCCCGGACTGGCCACTGAGTTGATCTGCAACATGCCAGCCGAAACGAGAGGCCAACCAGTGATACTGTTTGACATTGGAGAATGCGTCAATGACGTCAATGCCTTCCTGATTTACTCCCTCTCCGCTTCCTTGATCATGCTCACCATGGTCATCACCATGGCAGCTCATATGTTTTATTGGGATGCTTCCTATATTCTATACTACCTGAGGGCAAAGCTAAAGGGCTACCATTCCTTTGGGTCCGCAACAACAAACAATCTCTATGGTGCCTTTGTTACCTACGACACCAGAGACCTGTGGGTGTCAGACTGGGTGCTGAACCACCTGCGGGTGCAGctggaggagaggcaggagagacacctgcctctctgtctggaggagagagactgggtccCAGGGGTCCCCCTGATAGACAACCTCACCCACAGCATCCGACAGAGCCGCAAGACCGTTTTTGTGCTGACCGAGGCATATGTCAGGACCGGGACCTTCAGAATGGCTGTGTACCTGGCCCACCAGAGGCTGCTGGATGAAAACATGGACGTGATCGTGCTGGTTCTCCTGGAACCTGTACTGCAGCATTCTCACTTCCTCCGTCTGCGGCGGCGTCTGTGTGGGGAGAGTGTTCTGGAATGGACCCGGACTGCAGCCGCAGAGCCCTGGTTCTGGCAGTGCCTGAGGAACGCTGTCAGGTTAGACAACCAGGTGATGTACAACCAGATGTACTCCAGGTACTTCACCAATAAGTAGAGCACAGGCCAGACCAGAGACTCAAGAGGGACCAGGTAGCTTTCTCACACAAACAGACTGAGCAGTTAAACACAACAACTGCAATCCCTTTTTACAATTTATTTTTATATCCCTTTCTGATTGGATGATTCTGTGCATCTGAAATCAacaatatgtaaataaatgttcTATTCATTGCTTTAATGCcaaa

Function

GO: NA

KEGG:

id description
K10170 TLR8, CD288; toll-like receptor 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU339534 lncRNA downstream 605 77149992 ~ 77151643 (-) True LOC110520613
TU339605 lncRNA downstream 19186 77132656 ~ 77133062 (-) True G299373
TU339556 lncRNA downstream 113346 77034950 ~ 77038902 (-) False G299327
TU339558 lncRNA downstream 114291 77036846 ~ 77037957 (-) True G299328
TU339555 lncRNA downstream 114795 77033186 ~ 77037453 (-) False G299327
TU339628 lncRNA upstream 10288 77174734 ~ 77177524 (-) False LOC110520616
TU339622 lncRNA upstream 10916 77175362 ~ 77177524 (-) False LOC110520616
TU339633 lncRNA upstream 10916 77175362 ~ 77177524 (-) True LOC110520616
TU339690 lncRNA upstream 109855 77274301 ~ 77274642 (-) True G299445
TU339691 lncRNA upstream 110254 77274700 ~ 77274906 (-) True G299446
XR_002473013.2 mRNA downstream 369 77149891 ~ 77151879 (-) False LOC110520613
XM_036975240.1 mRNA downstream 49560 77084253 ~ 77102688 (-) True LOC110504825
XM_036975239.1 mRNA downstream 49562 77084253 ~ 77102686 (-) False LOC110504825
XM_036975238.1 mRNA downstream 49566 77084253 ~ 77102682 (-) False LOC110504825
XM_021598010.2 mRNA downstream 69597 77078738 ~ 77082651 (-) True LOC110520611
XM_021598013.2 mRNA upstream 196 77164642 ~ 77173237 (-) True tlr7
XM_036975241.1 mRNA upstream 10636 77175082 ~ 77245420 (-) False LOC110520616
XR_005051385.1 mRNA upstream 10636 77175082 ~ 77245420 (-) False LOC110520616
XM_036975248.1 mRNA upstream 362024 77526470 ~ 77538361 (-) True LOC110520620
LOC118944720 mRNA upstream 402910 77567356 ~ 77569192 (-) True LOC118944720
TU339219 other downstream 364517 76782843 ~ 76787731 (-) True G299024
TU338309 other downstream 985847 76166003 ~ 76166401 (-) True G298192
TU338234 other downstream 1095242 76055121 ~ 76057006 (-) True G298131
TU338161 other downstream 1189174 75960547 ~ 75963074 (-) True G298065
TU336182 other downstream 2912453 74239187 ~ 74239795 (-) True G296315
TU340463 other upstream 672036 77836482 ~ 77839215 (-) True pknox1.1
TU340453 other upstream 680221 77844667 ~ 77850766 (-) False LOC110520626
TU340455 other upstream 680221 77844667 ~ 77850766 (-) True LOC110520626
TU340551 other upstream 764040 77928486 ~ 77983204 (-) True G300200
TU340609 other upstream 870039 78034485 ~ 78035018 (-) True G300251

Expression Profile