RNA id: XR_005051385.1


Basic Information

Item Value
RNA id XR_005051385.1
length 6725
RNA type mRNA
GC content 0.53
exon number 18
gene id LOC110520616
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 77174734 ~ 77245420 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGGTTGTTACTGCGCGGCCCCTGCACATCATTCCACTGTGATGGAAATTAAATGAAGGTGGCTTAACGAACGGATCCAGGCATGCTTTGAAGGATGTAGCCGAGGGAAGCGCCACTACCAGATCCTTTTCCACAGGCTGTGGATTTGTGCCGCTGATGCGAGGACACAGCAATCACTCAGCCGTGCAGAAGCTCCGACAAGAGGACTAATCTCTCCACCTGACTTGTGGAAGCTACAGCTTTTTTTCCTCCCTGCATTATTTATCCCCACCGCTAAAGACAGTGGGACAATGGAGCCAGCTACCTGAAGTAGATGATCAATTTGTAGCCTTGGACGGACAGACCACAGTTTGCTGCGCACATGGATGTGTTTAGCTTTGTGAAGATGCCAAAGCTGTCAGGcCATAGGACCAAGTCATCAGGCTGGCTGCCGCCTGGCACCTGCAGCGCTGCACATGGACCCCCCAATGGATGGGACATGGCCACCAATAGAGACGGGAGAGACTTCTACATCAAcCACGTGTCCCAAAGTAGCTCCTTGGAGGAGGTTCGTCTGGACGGGGACAAGTTTGTACCTCCGGCCCCCCGTAAGGTGGAGATGAAACGAGATCCAGTCCTGGGCTTTGGCTTTGTGGCAGGCAGTGAAAAACCAGTGGTGGTTCGGTCAGtcacaccagGAGGTCCCTCTGAGGGCAGACTGACCCCCGGAGACGAGATCATCATGATTAACGATGAGCTGGTCAGCTCCGCCCCCAGGGAGATGGTCATCGACCTCGTCAGGAGCTGCAAAGAATCCATTGTTTTGACAGTGGTTCTGCCGTACACATCACCCAAATCTGCGTTCATCAGTGCAGCCAAAAAGGCCAAGTTAAAGTCTAATCCAGTGAAAGTCCGCTTCGCAGAGGAGGTCATCATTAACGGTCAAGTCCCGGAATCTGTGAAGGACAACTCTCTACTCTTCATGACAAATGTTCTGAAGGTGTACCTGGAGAACGGACAGACCAAATCCTTTAAGTTTGACAGGAACACATCCATTAAGGATGTCATCTTGACCCTGCAAGAGAAGCTCTTCATTAAGAGTATAGAACACTTCTCACTGATGCTGGAGCACAGACACGAGGGCTCGGCCAGCAGACTCATGCTCCTCCACGAGCAGGAGATGTTAACTCAGGCAACACAGAGACCAGGGGCGCACAAGATGAAATGCTTCTTCCGCATCAGCTTTGTCCCGAAGGACCCCATTGACCTCCTCAGGAGAGATGCAGTGGCGTTTGAATACCTCTATGTTCAGAGCTGTAATGACGTGGTGCTGGAGAGATTTGGGTCAGAGCTGAAATACGACACAGCCCTGCGTCTGGCTGCCTTGCAGATGTACATCCTCACCATTAACACCAAACAATCGCAGAAAGTCTCCCTCAAGTACATTGAGAAGGAGTGGGGTTTGGCACTGTTCCTCCCTCCTGCAGTACTATCCAGTATGAAAGAGAAGAACATCAAGAAAGCCCTAACACACATTCTCAAAACCAACCAGAATCTGGTACCTCCTGGAAAAAAGCTGTCAGCATTGCAGGCCAAGGTCCACTATCTGAAGTATCTCAGTGACCTGAGACTGTATGGAGGGCGGGTGTTTAAATCTATACTGCTGCAAGGCGAGAAGCACACAGAGGTGACTCTACTAGTGGGTCCCAGGTATGGCATCAGTCATGTGATCAACACCAAGACTAACCTGGTGGCGCTGCTGGCTGACTTCAGCCACGTCAACCGCATCGAGATGTACACAGAGGACGAGAAGAACGTCAGGGTAGAGCTACATGTTCTGGATGTGAAGCCCATCACTCTGCTAATGGAGTCCACTGATGCAATGAATCTGGCCTGTCTAACTGCTGGATACTACAGACTACTGGTGAACTCTCGGCGTTCCATCTTCAACGTGGTCAAACCAGGGAATGTAGACAACACCGGCCATGACTCCAGAGTAAAGCAGGTCTACCAGGCCATAGAGTGGACATACAGCGCTTCCTTTAGGGGATGTGAGGAGCACCAGCACCACAACAACCAGCGCTGCACCAGAGAGCCCTCCACCAATAGAGACACAGACTACATGGACCCTGGCTATATCACTGAGATCCAGCAGCCGCCCCAGTACTGCATGCAAATGGCAGAGAGGGTGGATGCCAGAGGGGGAACCAGTGGTCCAacacatccccaaccctacctCTGTGTCCCCAGGCCCAAACCCCAGGACTCCCCCCGCAGTGCCAAGGTCTCCTTCACCTTCGGGGATCCTCTGTTAGACAGTGTGGACCCCCAGAACCTGGGCTACCAGAGGCTGATGGAGGAAGGCCCAGAGGTTCTACACGACCCCATGTATGAGCGACTAGATGAGGATTACAACAGCAGGGATCTCATGGGGATGGCCGGGGAGGGATATCCGTACGCTGACAAAATCTTCGGCAACACCGAGTGCAGTGAGGAGCCGCTGCTGCACGACATCTGCTATGCGGATACCACAGACGCGGACGAGGACGAGGAGGACATCAGCTGCGAGGAGGACATGGGACTGATGGGGGATCTGGACAAGGCTAGGTTCCTCACGCTCTCTGGGTCCAGCGATGACATCATCGACCTGACCTCCCTGCCCCCGCCATGGGAGGGTAAGGACGAGAAAGACAACGAAGATGTGTTGCTTCACTCCCTCAACCTGGCCATCGCAGCCCCGCCCCCAGGCTTCAGGGACCGCTCTGATGAGGACGAGCAGCACGTGGGGGGCCGGGTGCCTGTCAAGAAGAGCCAGGGGACCCGTGATAATATCCCAGTGTCCATCATAGACTCAGTCACCACACAGGTGGAGGAGGGCGTTGAGGGGGCCCTGGACGAAGCTGTTGTGTCCACATTACAGGCCCTGGAAGCCCTGGCAGCTTCTGAGGAGCAGAGCCCAAAACCACAGTCAGAAAATAGCACAGGTATAGAAATATCAAGGGCATTTAGCCCCGAGTCCTCGTCAGACTCTGGCAACGAGACTAACTCCTCTGAGATGACAGAGAGCTCAGAGCTGGTCGCTGCCCAGAAACTGTCTGAAACCCACCTGAGACTGTATGTGGCCACCACTGAGGGCTACCACACTCTGACTGAGGAGAAAATAGAGTTGCCTGTAACACAGTATGAGGACGGGAAGGCCCTGGCCATACAGCACGACCCTCAGGAGAcccagggggaggaggaggaggagaagaagaaagaggaaggGGCCAAGTCCTCGGGTGTGTCATCCACCCAGATCCTATACTCAGAAAGGGGAGAGATGGAGCCAGAGACCAAGGAGACCAAGTACCCCACCGACTACTTTAGCAAACTGCACATGGGCTCTTTGATGTGCAAGCAGCCAGGAAAGCACAGTGACCCTGAGGGCAGGATTCAGGGAGATACCAGTGACTCAAGAGAAAAGCAAAACAGCAAAGTCCACTCAAATAGAGGGGAGCCACCCAAATATAATGCTATTGTAAGGGAATCTCCGTACATGAACCAATTCGAGTTGGGACGAACGCCATATCCGTATCGAGAGAAGCCGCCAAGATATCACCGGCCGCCTGAAAACAAAGTGGTCAACAATCTTTCCCCAGACTGTGTGAATGACTCACAAGCCTCCCTCTCTGGCAGGGTAACAATTAAGGGAGACAAGCAGGACTGGGATGAAAGGAGCCAGTGGTTAGATGCTGATTCACACTCCCATGCCAAAGACCCCCACAGTACCCAGGAAGCCAATTTACCCAGCAGCGAccggcagcagcagcagtcgagGATCCCCTCAGCTGAGCAGGATGTGACGCGGCTATATGAGTACCACCTTAGTAAGCACATGCCATCGTTACAGAGCAGCGAGGGTGTCCACTCCCTCCAGAGCTCACAGTGTTCCTCCATAGACGCTTCCTGCAGTACAGGAAGCAGCAGATGTGTGACGCCCAGGGACTCCCCCCTCTGCGCTGGAGAAAACATGCATCTACTTTCGGAGTGTTCCCTCAAGGGAATGGGCCATATGAATTGGGAGGAGAAGGCGTATGGCACCCAAGGCCAGGCCACACAGCAAGGCAAGGCTAGACATCAGACCATGGACCCCACCCTGCTGAGGAAGATCCACGCAGCCACCAGTGCCGAGCCTGGGTTCGGTACCGTACGAGGAGATGACTGCCACCGGATGCCCAAGATCAAAGAAACCACAGTGTAGCTTGTACACAGCTGGAGATGGCTGGTGGGAAAGACTCCTCCTCAGCTCTCTCTGAGGTAAACGCCGCCGCCACCACCACCAACTCACTACCATCATTTACCAGTAGCAGCAGCATGTCCAGAGTCCAGTGTTCCCAGTGTGCCAAAGCAGCAGGGGTGCCACAGCCCTGAGTCCTTCCCACACTGCACCCAGGCATTCCTCTCAAGCGTACACCCATGTGAACGTATCACAAGCAGCCTCAGGAGTCGGATGTTGAGGAGTAGCTGGAACAGCATCACACCCTGGATCTGGGTGCCTCGAAGCGCTGCTGGAAAAAACAAAAGCCACTCTGAACGGGAGGAGCGcccagagactccagtcacccgatGACCCCACCAAGCCACAGAGGGGAGATTAGCTTTTTCCAAGACACTTTCCAAGAGCTTGTCTCAGGGCTCAGTATGGTCTGTTAGATCAGTTAGCTCTCAGTCCTCTGGCAGGAGGCTTTTCAGAGGCGCCTCCATCTTGCTGCCAGCATCACTGGATGCCAAGCAGCTCCGAGCCATGCCACTACCCAGACTGCACCCCAGGAGGTGGTGGATGAGCCTGGAGGAGGTGCCACGGGCCCTTCACTCAATGCTTCCCCAAGAGGAAGACCAACATGGTTGGGGACGATGTAGATGAAGGTGGAGAAAACCCCATCCCATAGCCGTTCTCTGGAGGTCAAAGAACCCAATCACTCCCTAGCAACCTCAGTGTTGAGGTAGAGAACACaatctctctatacacctctggAGCTGAACCCTCCACTGTGGCTGAACAGCTCAACATGGCCAGTGTTGTGACTGTGAGTGATATGAGTCTGGGAACAATGCTGGCCCATGTGAACTCACTGAAGGGAAGACTTACAGCCTCCCAAAGGGGGtccaagacacacagagagattccCTTTAGATAATGGCCCTGGTGCGCTCCAGTGTAGGTCAGGGGGGGGCCAGAGAGAGGtccagaggtcagaggtcaggtagCCCGACCTGTGGAGATTCAGCCAGCTGCTCTCCATGAAGGCCCTAGAGCGAGGCAGCGCCTGTAGTCACATGGCCCTGGTGCACCCTGCTCACCCTGACTCAGTTTCCACATGCTCTGCTGCTTAACAAAGGCCTGCATGTCACTGGTGGAGGGCTTTAGCCATGAGAGCCGGCAGCGCGAGCTGGTCGCCAAGGTGGATGAGCTGGTCGCCAAGGTCGACAAGCTGGTCGCCAAGGTGGACGAGCTGGTTCGCCAAGGTGGACGAGCTGGTTCGCCAAGGTGGACGAGCTGGTCGCCAAGGTGGACAAGCTGATAGCCAAGGTGGACGAGCTGGTCACTAAGGTGGACGAGCTGGTAGCCAAGGTGGACGAGCTGGTAGCCAAGGTGGACGAGCTGGTAGCCAAGGTGATGAGCTGGAGGTGATGAGCTGGTAGCCAAGGTGATGAGCTGGTAGCCAACGTGGACGAGCTGGTAGCCAAGGTGATGAACTGGTAGCCAAGGTGACGAGCTGGTAGCCAAGGTGATGAACTGGTAGCCAAGGTGATGAGCTGGTAGCCAAGGTGACAAGCTGGTAGCTAAGGTGACGAGCTGGTAACCAAGGTGATGAGCTGGAGGTGATGAGCTGGTAGCCAAGGTGACGAGCTGGTAGCCAAGGTGGATGAGCTGGTAGCTAAGGTGGACGAGCTGGTAACCAAGGTGGACGAGCTGGTAGCCAAGGTGACGAGCTGGTAGCCAAGGTGACGAGCTGGTAGCCAAGGTGGGCGAGCTGGTAGCCAAGGTGACGAGCTGGTAGCCCAGGTGATGAGCTGGTAGCCAAGGTGACGAGCTGGTAGCCAAGGTGACGAGGTCGTCATGAGTTATGTATGCTTGCAACTGCTGAAACGGCTTCGGGCAGTTCCCCCGATGACACATCACTCTACCACCATGTCTGCTATTGTCAATACACCGAGTTGCTCAATTACAACACTCCCTTACAAGTAAACAGAACAACACGGTTGTCTTTCTGATTAGTGATTTCAAAGCCATACATTAGAGACATGGGTTTATTCGACTCAAACCGATGTGAACTGCTGTGACATACCTTTGTCTTTTCTGAATCGTGATGACACTTTTAAAAGAGATTATATTCAGGCCTCTGACCAGAAAAGAATTCCCCTTAGGGTATATACACTGATATTACTTGATAAGTATACTTTTACAAATTGATAATGGGGCGTAATGTGTAGATAGACCTCTATTGGATCTGCATTAtatttgtattcattgtattGAAATATTATTTTACACATGATACATATTATATGACAAAGAGCTCTAGACAAATCAATGTGGAAGAAAATAAATGATATTATGTGATTACAGTCCATTGTGACCTCAATCTTTTTCATTTGCTGAATCCACCGTAGTTTATGAATCTTTGCACATGATCACTGAGTACTTTCCTGTTATTTAGGTAGTCAGCACTGTAACATATTAAAGGTTTAAAACGCTGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU339534 lncRNA downstream 23439 77149992 ~ 77151643 (-) True LOC110520613
TU339605 lncRNA downstream 42020 77132656 ~ 77133062 (-) True G299373
TU339556 lncRNA downstream 136180 77034950 ~ 77038902 (-) False G299327
TU339690 lncRNA upstream 28881 77274301 ~ 77274642 (-) True G299445
TU339691 lncRNA upstream 29280 77274700 ~ 77274906 (-) True G299446
TU339952 lncRNA upstream 197579 77442999 ~ 77446805 (-) False G299676
TU339953 lncRNA upstream 199284 77444704 ~ 77446805 (-) True G299676
TU339969 lncRNA upstream 223661 77469081 ~ 77474433 (-) True G299690
XM_021598013.2 mRNA downstream 1845 77164642 ~ 77173237 (-) True tlr7
XM_021598012.2 mRNA downstream 10636 77152248 ~ 77164446 (-) True LOC110520614
XR_002473013.2 mRNA downstream 23203 77149891 ~ 77151879 (-) False LOC110520613
XM_036975240.1 mRNA downstream 72394 77084253 ~ 77102688 (-) True LOC110504825
XM_036975239.1 mRNA downstream 72396 77084253 ~ 77102686 (-) False LOC110504825
XM_036975248.1 mRNA upstream 281050 77526470 ~ 77538361 (-) True LOC110520620
LOC118944720 mRNA upstream 321936 77567356 ~ 77569192 (-) True LOC118944720
XM_021598023.2 mRNA upstream 327739 77573159 ~ 77577004 (-) True LOC110520621
XM_036975251.1 mRNA upstream 587027 77832447 ~ 77843970 (-) False pknox1.1
XM_036975253.1 mRNA upstream 587027 77832447 ~ 77843970 (-) False pknox1.1
TU339219 other downstream 387351 76782843 ~ 76787731 (-) True G299024
TU338309 other downstream 1008681 76166003 ~ 76166401 (-) True G298192
TU338234 other downstream 1118076 76055121 ~ 76057006 (-) True G298131
TU338161 other downstream 1212008 75960547 ~ 75963074 (-) True G298065
TU336182 other downstream 2935287 74239187 ~ 74239795 (-) True G296315
TU340463 other upstream 591062 77836482 ~ 77839215 (-) True pknox1.1
TU340453 other upstream 599247 77844667 ~ 77850766 (-) False LOC110520626
TU340455 other upstream 599247 77844667 ~ 77850766 (-) True LOC110520626
TU340551 other upstream 683066 77928486 ~ 77983204 (-) True G300200
TU340609 other upstream 789065 78034485 ~ 78035018 (-) True G300251

Expression Profile