RNA id: TU339628


Basic Information

Item Value
RNA id TU339628
length 2298
lncRNA type sense_over
GC content 0.49
exon number 2
gene id LOC110520616
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 77174734 ~ 77245420 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAGACTGCACCCCAGGAGGTGGTGGATGAGCCTGGAGGAGGTGCCACGGGCCCTTCACTCAATGCTTCCCCAAGAGGAAGACCAACATGGTTGGGGACGATGTAGATGAAGGTGGAGAAAACCCCATCCCATAGCCGTTCTCTGGAGGTCAAAGAACCCAATCACTCCCTAGCAACCTCAGTGTTGAGGTAGAGAACACaatctctctatacacctctggAGCTGAACCCTCCACTGTGGCTGAACAGCTCAACATGGCCAGTGTTGTGACTGTGAGTGATATGAGTCTGGGAACAATGCTGGCCCATGTGAACTCACTGAAGGGAAGACTTACAGCCTCCCAAAGGGGGtccaagacacacagagagattccCTTTAGATAATGGCCCTGGTGCGCTCCAGTGTAGGTCAGGGGGGGGCCAGAGAGAGGtccagaggtcagaggtcaggtagCCCGACCTGTGGAGATTCAGCCAGCTGCTCTCCATGAAGGCCCTAGAGCGAGGCAGCGCCTGTAGTCACATGGCCCTGGTGCACCCTGCTCACCCTGACTCAGTTTCCACATGCTCTGCTGCTTAACAAAGGCCTGCATGTCACTGGTGGAGGGCTTTAGCCATGAGAGCCGGCAGCGCGAGCTGGTCGCCAAGGTGGATGAGCTGGTCGCCAAGGTCGACAAGCTGGTCGCCAAGGTGGACGAGCTGGTTCGCCAAGGTGGACGAGCTGGTTCGCCAAGGTGGACGAGCTGGTCGCCAAGGTGGACAAGCTGATAGCCAAGGTGGACGAGCTGGTCACTAAGGTGGACGAGCTGGTAGCCAAGGTGGACGAGCTGGTAGCCAAGGTGGACGAGCTGGTAGCCAAGGTGATGAGCTGGAGGTGATGAGCTGGTAGCCAAGGTGATGAGCTGGTAGCCAACGTGGACGAGCTGGTAGCCAAGGTGATGAACTGGTAGCCAAGGTGACGAGCTGGTAGCCAAGGTGATGAACTGGTAGCCAAGGTGATGAGCTGGTAGCCAAGGTGACAAGCTGGTAGCTAAGGTGACGAGCTGGTAACCAAGGTGATGAGCTGGAGGTGATGAGCTGGTAGCCAAGGTGACGAGCTGGTAGCCAAGGTGGATGAGCTGGTAGCTAAGGTGGACGAGCTGGTAACCAAGGTGGACGAGCTGGTAGCCAAGGTGACGAGCTGGTAGCCAAGGTGACGAGCTGGTAGCCAAGGTGGGCGAGCTGGTAGCCAAGGTGACGAGCTGGTAGCCCAGGTGATGAGCTGGTAGCCAAGGTGACGAGCTGGTAGCCAAGGTGACGAGGTCGTCATGAGTTATGTATGCTTGCAACTGCTGAAACGGCTTCGGGCAGTTCCCCCGATGACACATCACTCTACCACCATGTCTGCTATTGTCAATACACCGAGTTGCTCAATTACAACACTCCCTTACAAGTAAACAGAACAACACGGTTGTCTTTCTGATTAGTGATTTCAAAGCCATACATTAGAGACATGGGTTTATTCGACTCAAACCGATGTGAACTGCTGTGACATACCTTTGTCTTTTCTGAATCGTGATGACACTTTTAAAAGAGATTATATTCAGGCCTCTGACCAGAAAAGAATTCCCCTTAGGGTATATACACTGATATTACTTGATAAGTATACTTTTACAAATTGATAATGGGGCGTAATGTGTAGATAGACCTCTATTGGATCTGCATTAtatttgtattcattgtattGAAATATTATTTTACACATGATACATATTATATGACAAAGAGCTCTAGACAAATCAATGTGGAAGAAAATAAATGATATTATGTGATTACAGTCCATTGTGACCTCAATCTTTTTCATTTGCTGAATCCACCGTAGTTTATGAATCTTTGCACATGATCACTGAGTACTTTCCTGTTATTTAGGTAGTCAGCACTGTAACATATTAAAGGTTTAAAACGCTGCAACCTGATTTTGGTCTCCTTTATTCTTCTGATAACAAATGGCACACAATGTAAAGGTCCCATTTCAATTTTCAATGATCAATTTCAAAATATTTCACAAATGTTGTTTTCTTGTTCTCTAAAGCCAAGCCCCTTTCTGCATGAGTGAAGGGAGCTTACTTCATCTTTCTCATAATTTATACCAAAAACTCTCCTGGACCATGTTTGGTTGAATAACAATGTTTAATTATTTACTGTTTGGAAGCTGGAGAGTGTGTCTGCATGGTGTATTCTAACCTTGCCAGGCACAGACAGCGCTGTTTTTCACTGCAGCCACTAGCTAATGTTCCAGTTGTCCCTGCATGCACACCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU339534 lncRNA downstream 23091 77149992 ~ 77151643 (-) True LOC110520613
TU339605 lncRNA downstream 41672 77132656 ~ 77133062 (-) True G299373
TU339556 lncRNA downstream 135832 77034950 ~ 77038902 (-) False G299327
TU339558 lncRNA downstream 136777 77036846 ~ 77037957 (-) True G299328
TU339555 lncRNA downstream 137281 77033186 ~ 77037453 (-) False G299327
TU339690 lncRNA upstream 96777 77274301 ~ 77274642 (-) True G299445
TU339691 lncRNA upstream 97176 77274700 ~ 77274906 (-) True G299446
TU339952 lncRNA upstream 265475 77442999 ~ 77446805 (-) False G299676
TU339953 lncRNA upstream 267180 77444704 ~ 77446805 (-) True G299676
TU339969 lncRNA upstream 291557 77469081 ~ 77474433 (-) True G299690
XM_021598013.2 mRNA downstream 1497 77164642 ~ 77173237 (-) True tlr7
XM_021598012.2 mRNA downstream 10288 77152248 ~ 77164446 (-) True LOC110520614
XR_002473013.2 mRNA downstream 22855 77149891 ~ 77151879 (-) False LOC110520613
XM_036975240.1 mRNA downstream 72046 77084253 ~ 77102688 (-) True LOC110504825
XM_036975239.1 mRNA downstream 72048 77084253 ~ 77102686 (-) False LOC110504825
XM_036975248.1 mRNA upstream 348946 77526470 ~ 77538361 (-) True LOC110520620
LOC118944720 mRNA upstream 389832 77567356 ~ 77569192 (-) True LOC118944720
XM_021598023.2 mRNA upstream 395635 77573159 ~ 77577004 (-) True LOC110520621
XM_036975251.1 mRNA upstream 654923 77832447 ~ 77843970 (-) False pknox1.1
XM_036975253.1 mRNA upstream 654923 77832447 ~ 77843970 (-) False pknox1.1
TU339219 other downstream 387003 76782843 ~ 76787731 (-) True G299024
TU338309 other downstream 1008333 76166003 ~ 76166401 (-) True G298192
TU338234 other downstream 1117728 76055121 ~ 76057006 (-) True G298131
TU338161 other downstream 1211660 75960547 ~ 75963074 (-) True G298065
TU336182 other downstream 2934939 74239187 ~ 74239795 (-) True G296315
TU340463 other upstream 658958 77836482 ~ 77839215 (-) True pknox1.1
TU340453 other upstream 667143 77844667 ~ 77850766 (-) False LOC110520626
TU340455 other upstream 667143 77844667 ~ 77850766 (-) True LOC110520626
TU340551 other upstream 750962 77928486 ~ 77983204 (-) True G300200
TU340609 other upstream 856961 78034485 ~ 78035018 (-) True G300251

Expression Profile