RNA id: XM_036975248.1


Basic Information

Item Value
RNA id XM_036975248.1
length 2449
RNA type mRNA
GC content 0.42
exon number 4
gene id LOC110520620
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 77526470 ~ 77538361 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tatgtgtgtgtgtgtgtatgtgtgtatgtgtgtatgtatgtatgtatgtatgtatgtatgtatgtatgtatgtatacatacatatgtgTGTAAATAAATAAGAATTAGCCTCTAATCGAATGATGGTGTACCTCACACCTCTCAACATACATGTgtaatagagtaccacagtatgagtcaaaatacccataaaacctagcggtcaaatagggaaatggttccaatcgtttttgcACCCTTAATTTCTCCAATAGGGGATTTTAAAAATACTTAAAATAAGGGTCgagtttcgtgtaggcttaccatTGCTTGACGTTTTGATCTCtttaggacaaggtgacttttatcaatatattcgcctgtatttaccccccaaaaatgaaatgctaaaatgattggaaccatttccctgtttgactgttAGGTttcatgggtattatgacacctccactgtggggctctatgggCCCTTTTTAAGACTTAAAATCTAAACGTGGTCAAAGAGACACATTCTTACGTTTtggaaagaagaggaggatgtcttGGGTTCTCGATCTTCTGAGAGATTTCCACTTAACCTCCCAAAGTAGTGTCCATCACTCCAAGCTGTTCTGATGATGCACTCTGAGGAAGGCCAAACTCTATTTTAACTTAAGGTTGTTGGAATGGGAACTTCAGAAGGTCCTGAAGAAAGGCAATCAGAACCGATTTTTTTCAGGTAAGAGTCAAATTTTCATGTACTCACTAAAACACCTTGATACATTAAATAGTTACAACTATTATAATCTTAACTAATATGAGATGGTGAGTATAGTGATTTTGAACTCTCAGACAAAAATGGCAATACTGGTTTTTTTTTCTTGTGTATTTAAGGTCAGATCAAAACCATCTCCTACAGACTGTCCAATGAGGTTTGGACTTTCCGAGAAGAGTCTCACTTCCCTAAGATGGACATCATGAACTCCTCAGATATCTTCACCCTCCAGGGGGAGACGGACAGGCAGCACAGAGAGAGGAGAATACATTTGCTTCTGAGGTTCTATCCAAATGGCAAACCCTTCATCACGTTATATCCAGACGGAACAGGTAATGTGTTGTATCTTTTTATTTAAGAGACTCGGGCACCAGGCAATTGTACAACAGCTTAGCAATAAGTTCCTTAGTGAAAACAAAGCTATCCATCTGGGAATGTTGCTATCATCATCTCCTCTGTGGAGGCTGCTGACTTCACCTATATAATCATGGAGGACAAGGATTTAGAGCCAAACTTTGAGGCCATGTTTACAACCAGAGGCCAGTCTACGTGCTACCACCCCAATGGACTTATATGggtgaACCTGACTCAGCTGGGAGGCTCCTGCTGCAGTGAGACCGGGGCTCTGAGACGACGCTGGACCTGGCTGGACCTTGAGCCTCACATCCAAGCCCCTCCCTTCCAGCCCATCTGTCTGGTCCTAGGTAGCCACGTCAGCCTCCGCATCCAGTCCCAGGAACGCATCTACCTCACATTCTCCTCTCACCAAAGCAGAGTACGTTTCAACGTGGGCTCCAAACTCAAGCTAACCCATCCGGAAGGCCTAGTGATGCCGGGGCCAGACATCCTGCAACAACATCTCCAAATGAAAAGCCTGGAGATTTACACTCTGCTGGACCGGATGCAGACCTGCATGGCCTACCAGCACTCGGCCAATCCCCACAACATTAAGCCCCAGTACAGCCTCGTTGCCCAGATGCAGAGACTCAAGAGACAGATGGAAAAACAGAGTTCACCCAAAAACACCAAAGCTCTCATGGCCTCTAAGGACTTATAACAACTGACAACTCAAAGCCTGTGTTGTTCTAGAATTCATATTGTTGCTATGAAACCAAGGCATTTAGCATTTTATTCTAATTAGAAATAAATGCAGTAGCCATGTGTAGCTATGCTAAAATATTAGAAAAGACTGGTCATGTTTCTTGTCAGATACATTTTGAATAGATTTAATGGTTGGCCCATTGTGCAAATTAAGAAATTAGTCAGCAGTCTAAGGAAAATGATGAATGAGGCACCTCACTCTTCAATCACAAGTAGGCCTAGAAGATTCAGTTGAGGTCCCAACAACCCTTGAACCCACCAACCCAGCCGTTTAATGTTGCTGGTCGGCTGTACAGCTGCCACGCGACTTGAAGGATGTGTAGTGATGCAGGAAACCTACAAACGGGGTAATAATGTTTTGACTAACTAGTTTTATACTGACTCGGTGCAGGTATCATAGCTAACTCCGAATCTTCAATAGAAATAGGCCACGGTAGACAGAACCTTAATTACTCATCTGTGCAGCAGCCTGAAGGTCAACTGATTGACCATGACATTTCTGAACAGTCTCTTCAGAGGAGCTGTGTCTGCGATGTTATGCCCACGGCATTTACATAATTTAAGTAAAAATAAATCTTGTGAGTTAATTTAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU339977 lncRNA downstream 49065 77476623 ~ 77477405 (-) True G299695
TU339969 lncRNA downstream 52037 77469081 ~ 77474433 (-) True G299690
TU339974 lncRNA downstream 52444 77472579 ~ 77474026 (-) True G299693
TU339971 lncRNA downstream 56326 77469787 ~ 77470144 (-) True G299691
TU339952 lncRNA downstream 79665 77442999 ~ 77446805 (-) False G299676
TU340093 lncRNA upstream 44682 77583043 ~ 77583359 (-) True G299794
TU340094 lncRNA upstream 45927 77584288 ~ 77584549 (-) True G299795
TU340095 lncRNA upstream 47089 77585450 ~ 77585707 (-) True G299796
TU340108 lncRNA upstream 70215 77608576 ~ 77609089 (-) True G299809
TU340110 lncRNA upstream 72912 77611273 ~ 77611547 (-) True G299811
XM_036975241.1 mRNA downstream 281050 77175082 ~ 77245420 (-) False LOC110520616
XR_005051385.1 mRNA downstream 281050 77175082 ~ 77245420 (-) False LOC110520616
XM_021598013.2 mRNA downstream 353233 77164642 ~ 77173237 (-) True tlr7
XM_021598012.2 mRNA downstream 362024 77152248 ~ 77164446 (-) True LOC110520614
XR_002473013.2 mRNA downstream 374591 77149891 ~ 77151879 (-) False LOC110520613
LOC118944720 mRNA upstream 28995 77567356 ~ 77569192 (-) True LOC118944720
XM_021598023.2 mRNA upstream 34798 77573159 ~ 77577004 (-) True LOC110520621
XM_036975251.1 mRNA upstream 294086 77832447 ~ 77843970 (-) False pknox1.1
XM_036975253.1 mRNA upstream 294086 77832447 ~ 77843970 (-) False pknox1.1
XM_036975254.1 mRNA upstream 294086 77832447 ~ 77843970 (-) False pknox1.1
TU339219 other downstream 738739 76782843 ~ 76787731 (-) True G299024
TU338309 other downstream 1360069 76166003 ~ 76166401 (-) True G298192
TU338234 other downstream 1469464 76055121 ~ 76057006 (-) True G298131
TU338161 other downstream 1563396 75960547 ~ 75963074 (-) True G298065
TU336182 other downstream 3286675 74239187 ~ 74239795 (-) True G296315
TU340463 other upstream 298121 77836482 ~ 77839215 (-) True pknox1.1
TU340453 other upstream 306306 77844667 ~ 77850766 (-) False LOC110520626
TU340455 other upstream 306306 77844667 ~ 77850766 (-) True LOC110520626
TU340551 other upstream 390125 77928486 ~ 77983204 (-) True G300200
TU340609 other upstream 496124 78034485 ~ 78035018 (-) True G300251

Expression Profile