RNA id: XM_036975251.1


Basic Information

Item Value
RNA id XM_036975251.1
length 3997
RNA type mRNA
GC content 0.46
exon number 10
gene id pknox1.1
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 77832447 ~ 77844072 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTTCCGTTCCCTATCAATCAAACCAATCTGGGCCGCACAGAATAATGCTTAGGGCAAAAGCTCGGGAGGTGGGGAGGCCAGTGGAGTTCATGTAGCATTGAATAGATGGCCGGAGCCAAGGAAGATGGAAATTACTCGAGGAAAAAAAAAATGTCGGCGTtttagggagaggaggggggtgggaaAGAAGGATTCTGAAAAAGCAAGGGCGACAGCTAGAAGCAAGGCCCCAGCCAGTGTACCCTCTTCCAGTTGAATCGCGAGTGGCACAGGGGAGGGATAGGCAGCTGTCCCTTGCTTGATTGATTGATGTGGGCAAGATTTTTCGAACTAAAATTAGAAACTaatatttataaatacatttacgAATAGCAATAATATTTTAATACAATGTCAATGCATATGGGATGAAATACGCACTTTATATGCACTTTAATCCAGCAGCATTTTGTCATGTTACTGTATTTTCGCGCAGCTACCTGTGAAAGCGGCAGCTGATCCGTCTCAGACACCGCTGTAAATATGGCGCTTCTGCTTAACTTCACCATTGCAAACTAACGTTTTAAAACAAGGACTCTTCACTTGGTGTTGCGGCCATGAAGAGAGTTAATGCATATTACATTTAGTACACATTTGAGGCTGTTATCGCCTAATTTAGTGGGCAAAAGGAACAATTTTCTATTTATTAGCTAGTAAGCTAACTAGCTAGATAGCTGGTTTATTTACGAAagcaactaacgttagctattttGTTTAGCGACCTTGTCTTGAACAAGTAAACATTCGCAATAAATGTAGTTTAAAGTTCTCTGAAACTGAATTTTTACTTCACTGAATTGTCTCACTCCGACAGCTTTTCCTTCATATGATTGAAAGCTAATCCAATAATTGCTTGCTATTGCTAAACCACCAAGAAGCTCTACTAGTTGGCTTTGTTGCTGCGAGAAATGGCAGCAGTCGGGTTTTAACATGGTGGGTGTGTGCCATCAGTTAGGACCGTGGACATTAACCTGGTTTCACGATAAGACATGTATGATTCGCACCGTTGTCGTATCCTTGCACACGAGCGTAAGTCAAAGACGTGCACAAAGCTGTACATTTCGAATGCAAGCGTATAAACTACATAACATTTAGTTCTCCCCTCATAGCCTTTGTTTCCTAAGCCTTTTATATGTAAATATACATGCATGTTTCATTCTCGTTTTGACGAATACCTTACAGTCAAATAGGTAGCTGCATTGTCGTGTATGTTATTGCACTACAGGGAGTAGATCATCTCTGTCAGAGCAATCCAGCATTGCCATGTTCTATTCATAAACATGGTCAATTAATAAAGTGTAAAAGTGGAATGTAATCGTGTTTAGGCCATTAAAAACATTCTTTATTTCTATGGTTTAGACTACAATAAGGGTCAAATATTTATAGCACTTGGTCTTTCAAAGAGGGAAAAACAATTCAATAGATTTTCACTGTAGTTTTGCAATTTACCTCAACCCTTCTCCTTAGTGCAGTATTAGTCCAATATTGTTTACCAAATACAAATGTCAGTTTTTGTAACTTGTCCTGTTTTCAAATAATCTCCATTTATCATGAAGAGTAATTTATACTATAATAGCCTTTTTTAATTCTCAACAGTGTGTGGACCTATGTGTTTTTCTAGGTCCGCCAACATGATGGCTGCCCAGTCGGATTCCATAGACAAGTACCTGGAGGGAGAGCAGCAGATGCTGGGGTCGGAGCAGGTGGATGGTGACGAGGGTTTGGATGCAGCCTCCAGTCCAACCCCCACTGAGCCCCAGACCCCCATGGATGTAGATAAGGCTTCCATATACCGGCATCCCTTGTTCCCTCTCCTGGCCCTGCTCTTTGAGAAATGTGAGCAGTCGACACAGGGCTCAGACTGTGTCACGTCAGCCAGCTTCGACGTGGACATTGAGAACTTTGTCCGAAGCCAGGAGAAAGAGGGCAAAGCCTTCTTCAGTGAGGACCCTGATCTCGACAATCTGATGGTGAAGGCCATCCAGGTGCTGCGGATCCACCTGCTGGAGCTGGAGAAGGTCAGCGACCTGTGTAAGGACTTCTGCAGCCGCTACATCTCCTGCCTCAAGACCAAGATGAACAGCGAGACGCTGCTGAGTGGAGAACCTGGCAGCCCCTACTCATCTGGACAGGGTTTCTCCCCCACCAAGATCCAGACGTCCAGCTCTTTCACAGGAACCCTCAGTCCCCAGGGGATTGTGGTGCCAGCATCGGCCCTGCAGCAAGGCAACGTCACCGTGACAACAGTCAACCCCACACAGGTTATAGCAGGTATGTCACCCTGGCATACAACAACCACAGGTGGCACAGTCTACCAACCAGTCACAGTAGTCAACTCACAGGGCCAGGTGGTGTCACAGACCCTCTCGCCCCAGACCATACGCATCCAGAACAcacagCTCCAGCTGCAGCTCAACCAGGACCTGAGTTTCTTCAACCACGACGACAGCTCACCCAAGAACAAGCGTGGCGTTCTTCCCAAACAAGCCACCAACGTCATGCGCTCCTGGCTCTTCCAGCACATCGGGCACCCCTACCCCACAGAGGATGAGAAGAAGCAGATCGCTACCCAAACTAACCTGAGCCTCCTCCAAGTCAACAACTGGTTCATAAATGCGCGGAGGCGAATCCTGCAGCCCATGCTGGACGCCAGCTCTTCGGAGACACCCAAAACCAAGAAGAAACCTCCTCCGAACAGGCCGCTACAGCGCTTCTGGCCTGACTCCATCGCCACGGGGATGACCCAACAACAGGTCCAGATGCCAGAtgGAACCACGGTGATGATGAGTGTGGAGGGTCTCCGGAGCCTGACATCAGACGGTGCCACGCTGGCCGTGCAGCAGGTGATGATGGGCGGGCACAGCGAGGACGAATCAGGAGACAGCGGGGACGAGGACGATGATGACGACATGGCTGGGCTGGGCCTGGACAACAGCGACTCCCTGCAGTAGGACACAgatgtactgtatacacacacacaaacacgaagACATACACACTTTAAAACAAACTttaatatgtatatgtgtgtgtgtggtggttaaGACCATCAACTGACCCATTATGTAGGTAGGCTGATAATGATTAAGGTGGGCTGATAATGATTAAGGCGGGCTGATAATGAATAAGGCGGGCTGATAATGAATAAGGCGGGCTGATAATGAATAAGGCGGGCTGATAATGAATAAGGCGGGCTGATAATGAATAAGGCGGGCTGATAATGAATAAGGCGGGCTGATAATGAATAAGGCGGGCTGATAATGAATAAGGCGGGCTGATAATGAATAAGGCGGGCTGATAATGAATAAGGCGGGCTGATAATGAATAAGGCGGGCTGATAATGAATTGCAACACACACTTAGAACCAAATCAGAGCCATTTTTGATGCTCTGCTAAAAATAGGATGGCTCAGAttatgtatgtactgtagataGACTGGTATTGCATCGCAAGTACACAATGTAAGTATACGCTCGCTCGATCGGTttacacagagcacagagcacaagCACTGGACATACGGGATCACTCCTGATGTTCCTTTAATGAATGGAGTGTCTTGTGTGTGAGGAGTTCGATTTCAGAAAGCGTTTTTACCAAGCCATCTGCGTGTGTAGGCCAGTGTTTTTCTCTATAATATCATTGTATTTTCCAAAAGCCCGAGAACGGAAGCAgcaacacaaaaaaatcataaagTGTTAAACACACTCTGAAGCTCCGTTACTAAATGTTGAatgatttcttattttttttaatataatcTCTTGTTGGATGCCAACACTTTCAAGTTGTATCTGTAATGGGTTTTGTTCACTTTGCATGCCTGTGTTTGACTACATGTGCACACTCTGATTAGGACTGGCTTACAGGCAGAGCCCATGGTGTACAGGAAGACCCTATAGGTCCAGAAAAAGCCCATTGGGAGAATTTAAAGTAAAGAGGCTTATTTTTATATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU340401 lncRNA downstream 55186 77725339 ~ 77777261 (-) True G300073
TU340398 lncRNA downstream 151962 77679608 ~ 77680485 (-) True G300070
TU340190 lncRNA downstream 167214 77664529 ~ 77665233 (-) True G299890
TU340146 lncRNA downstream 200455 77631705 ~ 77631992 (-) True G299847
TU340120 lncRNA downstream 217631 77614534 ~ 77614816 (-) True G299821
TU340528 lncRNA upstream 35149 77879119 ~ 77880078 (-) False G300179
TU340529 lncRNA upstream 35149 77879119 ~ 77879758 (-) True G300179
TU340540 lncRNA upstream 61842 77905812 ~ 77911851 (-) True G300190
TU340565 lncRNA upstream 122482 77966452 ~ 77966723 (-) True G300213
TU340582 lncRNA upstream 153707 77997677 ~ 77998710 (-) True G300230
XM_021598023.2 mRNA downstream 255443 77573159 ~ 77577004 (-) True LOC110520621
LOC118944720 mRNA downstream 263255 77567356 ~ 77569192 (-) True LOC118944720
XM_036975248.1 mRNA downstream 294086 77526470 ~ 77538361 (-) True LOC110520620
XM_036975241.1 mRNA downstream 587027 77175082 ~ 77245420 (-) False LOC110520616
XR_005051385.1 mRNA downstream 587027 77175082 ~ 77245420 (-) False LOC110520616
XM_021598030.2 mRNA upstream 696 77844666 ~ 77850842 (-) False LOC110520626
XM_036975257.1 mRNA upstream 696 77844666 ~ 77850842 (-) False LOC110520626
XM_036975258.1 mRNA upstream 696 77844666 ~ 77850842 (-) False LOC110520626
XM_036975259.1 mRNA upstream 930 77844900 ~ 77850842 (-) False LOC110520626
XM_036975260.1 mRNA upstream 961 77844931 ~ 77850842 (-) False LOC110520626
TU339219 other downstream 1044716 76782843 ~ 76787731 (-) True G299024
TU338309 other downstream 1666046 76166003 ~ 76166401 (-) True G298192
TU338234 other downstream 1775441 76055121 ~ 76057006 (-) True G298131
TU338161 other downstream 1869373 75960547 ~ 75963074 (-) True G298065
TU336182 other downstream 3592652 74239187 ~ 74239795 (-) True G296315
TU340453 other upstream 697 77844667 ~ 77850766 (-) False LOC110520626
TU340455 other upstream 697 77844667 ~ 77850766 (-) True LOC110520626
TU340551 other upstream 84516 77928486 ~ 77983204 (-) True G300200
TU340609 other upstream 190515 78034485 ~ 78035018 (-) True G300251
TU340859 other upstream 449813 78293783 ~ 78294220 (-) True G300470

Expression Profile