RNA id: TCONS_00029043


Basic Information

Item Value
RNA id TCONS_00029043
length 817
lncRNA type lincRNA
GC content 0.36
exon number 2
gene id XLOC_014698
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 18879002 ~ 18880124 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tggtatttaccctgtaagtacaggtaacaaggaggtaacaagagaggaacaaagcttcactttaatttacaaccctcaaatgtggtatttaccctgtaagtacaggtaacaaggaggtaacaagagaggaataaagcttcactttaatttacaaccctcaaatgtggtatttaccctgtaagtacaggtaacaaggaggtaacaagagaggaacaaagcttcactttaatttacaaccctcaaatgtggtatttaccctgtaagtacagggaacaaggagggaacaaatactgtatttaccctttaactacagggaacaaagagggaagaagctgaactttaacatactagtgtatacttgaacactaagaacagagtaaactacagcagcagtttttattgtttgaagaccaaattactagatttttctataaagcatcagctatacatttactgaaatgcaacagttagcccccctgtgcaacagcagtaaagatgcgagcctgttttaatctgcattgaaccctgacggtaggcctatgtcatgcaaagttatttgttgatagtgagttatggagacattgatggctttggtgagatcgacgagtaaacataaggtaagtagtgtatggaaatatatgttatattgaattgcagatttaaaatacatacagtatacaataagggttcataatttcacaggttgtaaaccttttattcattaaacaccctatataaaacccaagcactgaataagagtactaatgtactcacgcaggtgcatatacagtacatttgcagatagcaataggttgtc

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000169190

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030201 lncRNA downstream 15798 18860056 ~ 18863204 (-) False XLOC_014697
TCONS_00030200 lncRNA downstream 16882 18860056 ~ 18862120 (-) False XLOC_014697
TCONS_00030197 lncRNA downstream 34589 18832068 ~ 18844413 (-) False XLOC_014693
TCONS_00030199 lncRNA downstream 34589 18832068 ~ 18844413 (-) False XLOC_014693
TCONS_00030198 lncRNA downstream 34589 18832068 ~ 18844413 (-) False XLOC_014693
TCONS_00029044 lncRNA upstream 62602 18942726 ~ 18953206 (-) True XLOC_014699
TCONS_00029048 lncRNA upstream 136071 19016195 ~ 19023360 (-) True XLOC_014700
TCONS_00030202 lncRNA upstream 395689 19275813 ~ 19279866 (-) False XLOC_014701
TCONS_00030203 lncRNA upstream 578927 19459051 ~ 19461297 (-) True XLOC_014704
TCONS_00030204 lncRNA upstream 630433 19510557 ~ 19512337 (-) True XLOC_014706
TCONS_00029040 mRNA downstream 23285 18847424 ~ 18855717 (-) False XLOC_014696
TCONS_00029039 mRNA downstream 23489 18846923 ~ 18855513 (-) False XLOC_014696
TCONS_00029032 mRNA downstream 196492 18657230 ~ 18682510 (-) False XLOC_014690
TCONS_00029031 mRNA downstream 196492 18657230 ~ 18682510 (-) True XLOC_014690
TCONS_00029030 mRNA downstream 211872 18657029 ~ 18667130 (-) False XLOC_014690
TCONS_00029045 mRNA upstream 109787 18989911 ~ 19026028 (-) False XLOC_014700
TCONS_00029046 mRNA upstream 111318 18991442 ~ 19026028 (-) False XLOC_014700
TCONS_00029047 mRNA upstream 111347 18991471 ~ 19025998 (-) False XLOC_014700
TCONS_00029049 mRNA upstream 397958 19278082 ~ 19339337 (-) False XLOC_014701
TCONS_00029051 mRNA upstream 407679 19287803 ~ 19339285 (-) True XLOC_014701
TCONS_00029042 other downstream 17122 18861739 ~ 18861880 (-) True XLOC_014697
TCONS_00029041 other downstream 23526 18854057 ~ 18855476 (-) True XLOC_014696
TCONS_00029038 other downstream 37459 18841413 ~ 18841543 (-) True XLOC_014695
TCONS_00029037 other downstream 40461 18838411 ~ 18838541 (-) True XLOC_014694
TCONS_00029036 other downstream 44145 18834727 ~ 18834857 (-) True XLOC_014693
TCONS_00029050 other upstream 407039 19287163 ~ 19339287 (-) False XLOC_014701
TCONS_00029060 other upstream 829803 19709927 ~ 19710042 (-) True XLOC_014709
TCONS_00029066 other upstream 848566 19728690 ~ 19728755 (-) True XLOC_014711
TCONS_00029070 other upstream 942038 19822162 ~ 19861512 (-) True XLOC_014710
TCONS_00029077 other upstream 1263726 20143850 ~ 20148449 (-) False XLOC_014717

Expression Profile

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