RNA id: XM_036975284.1


Basic Information

Item Value
RNA id XM_036975284.1
length 3101
RNA type mRNA
GC content 0.46
exon number 20
gene id LOC110520630
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 77934076 ~ 77964066 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGTCATTTGTAGACCAAAGTGGAGGTTGGGCGACCAGTGTGACTGTGAATGACAGTTCCACGAAGCTCTGTGAAAGAACAAGGAAGTGATAGCTATACCGCCCGAGTTGGACGAGAAACAAGACGGTTCTTTTGAAAATTTCCGCGATTTCAGCCACGGAGAATACAGCTTCTGAGGGGATGTTCCTGCAGCCTCTTGGCCATGTCTCCTGGGCCTTGCATTACGCTCACAGAATGGAGCTGTAGGTCTGCGTGttggtcatcatcatcatcatcgctgtGAGACCTGCCCGTCTGACTGCCCAGTGCCTGTTATCGACAAATCATGGCCCCCGTGCCACCTGGCATCCGTTTCCTGGCATCCTTCAACAGAGATCAGTGGTACAGAGCCTTCACCTTTGGCCTCACCTTCCTGCTGTACACCAGCTTCCACCTGTCCAGAAAACCCATCAGCATtgtcaagAGTGAGCTGCATAAGAACTGCTCAGCTCTCCATGAGCTCTCCACGGCTGGTAGTAGGCAGCTGCCCAGcttccacacagagacagactgcaGCTGGAAACCTTTTGATAAAAGCAACTATAAGCAGCTTCTGGGAGCCATGGACTACTCCTTCCTCTGTGCCTACGCTGTGGGAATGTACCTCAGTGGCATCATCGGCGAGCGCCTGCCTATTCGTCTGTACCTGACGTTCGGCATGCTGATGAGTGGCCTCTTCACCTGTCTGTTTGGTCTGGGCCGCATCTACAACATCCACAACCTCAGCTTCTATATATTTGTCCAGGTGGCCAATGGCTTGGTTCAGACCACTGGCTGGCCCAGTGTGGTCACGTGCATCGGGAACTGGTTTGGGAAGGGAAGGAGGGGTTTGATCATGGGCATATGGAACTCCCATACCTCAGTGGGCAACATCCTGGGCTCTTTGATCGCAGGTTACTGGGTCTCCTCCAACTGGGGCCTGTCCTTCATCGTCCCCGGCCTCGTCATCGCTGCTATGGGCGTCGTCTGCTTCCTCTTCCTCATCGAACATCCAAATGATTTGAAAAGCATCCATGATGTACAGAACCCTGCTTCCAGCAACACTAAGCTGACCAATAGCTGGAAAGGGGTGAATGGACATAACCAGCTCTATCATTCGTACAAACAAGGAGGCAAATCtcagAACTGGGACACAGAGCTGCTGCTCCCTGTACAGCAGGTGGTAGTGGTGAAAAGTGAATCGGAGCCCTCGGCCATCAGCTTCATGGGAGCATTACGCATACCGgGAGTGATCGAGTTCTCTCTGTGTTTGCTGTTTGCCAAGCTGGTCAGCTACACTTTCCTCTTCTGGTTGCCGCTCTACATCACGAAAGCAGctcaCCTAGATGCCAAGAAGGCCGGAGAGCTCTCCACTCTGTTTGACGTGGGAGGAATTGTGGgggGAATCCTGGCTGGGGTCATATCTGATAAGCTGGGAAAGAGGGCCACTACCTGTGCAGTGATGCTGCTGCTGGCTGCTCCTACTCTTTATGGCTTTTCTATGATCAGTGAGTTTGGACTGGGACCCACCATCGGTATGCTGCTGGTGTGTGGAGGGCTAGTGAATGGACCATATGCCCTTATTACAACAGCAGTGTCTGCTGatctgGGAACACACAAGAGCCTGAAGGGCAACTCCAGAGCCCTTTCTACTGTCACAGCCATCATCGACGGCACAGGATCAGTAGGTGCAGCGATAGGTCCCCTCCTGGCAGGAGTGTTGTCGTCACGGGGATGGAACCAGGTCTTCTACATGCTGATGGCAGCTGACTTCCTAGCACTGGTGCTGTTGCTGCGGCTGGTGACAAAGGAGCTGACCTCTGCCAACGTGGTTAAACCTCGTTCTGGCAGCACCACAGTAGAGATGAAAGAGCACTGAGCACTTTGCACTAACTCCAGACAGAGGAGTGAACAGACTGTTCctcagcacagacacacacgctgcATCTTATGccactaacctgtacctccgTCCAGTAACTGAACTGAGCTAGTGTGAAGCAGCACCTCCTTAGAACCGAATGAAAGCCGATTGAAGATTCGGTTACAAGATAATAAGCAAACAACCAAGCCATCCAAAGTTCCTCTGAGCACGTACCACTATAACTTTTGTTTTACTTGTTCTACAGCACACTGGgccttaaatatatatatatatatatatatatatatattttactgtcAGGTCTGCCTTATGGAACCAAAGATTGTGTGGAAATGCATTATAATTTATATGAaatgtattattataatttttttaaagttGCCATTATAATATTCTGTTCTGTGGTGTATTTTCTCTGTAAATGAAGTATATTCAGGTACTGCGATGTTGTATTTGTATACGATCAACAAATGATGTTTATTATGTTTGGTGACTTCAATCCTATGAATGTAACATTTTGTGTTAGAGTTGGTATGTAGAATTTCATACTCAAACTGATGAGGAGGATCAATAATTTCTGAATAAGCTTTTCTTTAGGCAGTGCGATGTTGAAAACGTTAGTGATGATGTTTTATGTAGATGTAGAAAATATCAAATACCATCGTCCCAAACCTTAAATGATCATATAAAAGTGAGTTCATTTATTCTGCCTCTACAATGTGAACATTTTGAATGTGTTCTTTTTTGACTAATGCCTGCTAACTCAAGTCCCGTTTTAGAGTGTAAAAAGCACAAAATGCCAAATGAGTGAAGAAATGTAGGTGATAATCATCTTtataagaaaatatatatattcttaacTTTCATGATGGCACATGCAGAGGCTGTGGTCAATTCCAATTAACTTCCTGTGTTAAACAGAATTCAAGTGGAATAGACCCCATCCAACAACATGTCCATTTTATTTATGTGAAGATAGAGCACATCGTGGAGGAAGATAAAACGTTCATCTAAGTTCTTCAGTGGTAGTACTTGAAATACTGTGTGCCTTTTGTTGTTTTGTCAGGCAGTTGCTTCGTTCAGTGACGTATGTGTGAGCCTTACTTGATCACTATAGCTACATGGTCTTGGTGACAATTGTAGATTTGTAATGACCTcttggtaaataaataaaaaaaatgatggCATGTCTGTATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU340540 lncRNA downstream 22225 77905812 ~ 77911851 (-) True G300190
TU340528 lncRNA downstream 53998 77879119 ~ 77880078 (-) False G300179
TU340529 lncRNA downstream 54318 77879119 ~ 77879758 (-) True G300179
TU340460 lncRNA downstream 64752 77829007 ~ 77869324 (-) True G300125
TU340401 lncRNA downstream 156815 77725339 ~ 77777261 (-) True G300073
TU340565 lncRNA upstream 2388 77966452 ~ 77966723 (-) True G300213
TU340582 lncRNA upstream 33613 77997677 ~ 77998710 (-) True G300230
TU340591 lncRNA upstream 50108 78014172 ~ 78014644 (-) True G300237
TU340783 lncRNA upstream 130017 78094081 ~ 78094333 (-) True G300398
TU340788 lncRNA upstream 137787 78101851 ~ 78124289 (-) True G300402
XM_036975267.1 mRNA downstream 749 77873788 ~ 77933327 (-) True LOC110520629
XM_036975268.1 mRNA downstream 1056 77873788 ~ 77933020 (-) False LOC110520629
XM_036975271.1 mRNA downstream 1216 77873788 ~ 77932860 (-) False LOC110520629
XM_036975265.1 mRNA downstream 1217 77873788 ~ 77932859 (-) False LOC110520629
XM_036975269.1 mRNA downstream 1218 77873788 ~ 77932858 (-) False LOC110520629
XM_021598044.2 mRNA upstream 108527 78072591 ~ 78076780 (-) True LOC110520634
XM_021598045.2 mRNA upstream 120636 78084700 ~ 78096638 (-) False ifngr2a
XM_021598047.2 mRNA upstream 120636 78084700 ~ 78096638 (-) False ifngr2a
XM_021598049.2 mRNA upstream 120636 78084700 ~ 78096638 (-) False ifngr2a
NM_001361111.1 mRNA upstream 120641 78084705 ~ 78096610 (-) True ifngr2a
TU340453 other downstream 83310 77844667 ~ 77850766 (-) False LOC110520626
TU340455 other downstream 83310 77844667 ~ 77850766 (-) True LOC110520626
TU340463 other downstream 94861 77836482 ~ 77839215 (-) True pknox1.1
TU339219 other downstream 1146345 76782843 ~ 76787731 (-) True G299024
TU338309 other downstream 1767675 76166003 ~ 76166401 (-) True G298192
TU340609 other upstream 70421 78034485 ~ 78035018 (-) True G300251
TU340859 other upstream 329719 78293783 ~ 78294220 (-) True G300470
TU341782 other upstream 1139285 79103349 ~ 79107772 (-) False G301283
TU341784 other upstream 1139285 79103349 ~ 79290938 (-) True G301283
TU341779 other upstream 1258034 79222098 ~ 79223310 (-) True G301282

Expression Profile