RNA id: XM_036975283.1


Basic Information

Item Value
RNA id XM_036975283.1
length 3429
RNA type mRNA
GC content 0.46
exon number 20
gene id LOC110520630
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 77934076 ~ 77964066 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGACGTCATTTGTAGACCAAAGTGGAGGTTGGGCGACCAGTGTGACTGTGAATGACAGTTCCACGAAGCTCTGTGAAAGAACAAGGAAGTGATAGCTATACCGCCCGAGTTGGACGAGAAACAAGACGGTTCTTTTGAAAATTTCCGCGATTTCAGCCACGGAGAATACAGCTTCTGAGGGGATGTTCCTGCAGCCTCTTGGCCATGTCTCCTGGGCCTTGCATTACGCTCACAGAATGGAGCTGTAGGTCTGCGTGttggtcatcatcatcatcatcgctgtGAGACCTGCCCGTCTGACTGCCCAGTGCCTGTTATCGACAAATCATGGCCCCCGTGCCACCTGGCATCCGTTTCCTGGCATCCTTCAACAGAGATCAGTGGTACAGAGCCTTCACCTTTGGCCTCACCTTCCTGCTGTACACCAGCTTCCACCTGTCCAGAAAACCCATCAGCATtgtcaagAGTGAGCTGCATAAGAACTGCTCAGCTCTCCATGAGCTCTCCACGGCTGGTAGTAGGCAGCTGCCCAGcttccacacagagacagactgcaGCTGGAAACCTTTTGATAAAAGCAACTATAAGCAGCTTCTGGGAGCCATGGACTACTCCTTCCTCTGTGCCTACGCTGTGGGAATGTACCTCAGTGGCATCATCGGCGAGCGCCTGCCTATTCGTCTGTACCTGACGTTCGGCATGCTGATGAGTGGCCTCTTCACCTGTCTGTTTGGTCTGGGCCGCATCTACAACATCCACAACCTCAGCTTCTATATATTTGTCCAGGTGGCCAATGGCTTGGTTCAGACCACTGGCTGGCCCAGTGTGGTCACGTGCATCGGGAACTGGTTTGGGAAGGGAAGGAGGGGTTTGATCATGGGCATATGGAACTCCCATACCTCAGTGGGCAACATCCTGGGCTCTTTGATCGCAGGTTACTGGGTCTCCTCCAACTGGGGCCTGTCCTTCATCGTCCCCGGCCTCGTCATCGCTGCTATGGGCGTCGTCTGCTTCCTCTTCCTCATCGAACATCCAAATGATTTGAAAAGCATCCATGATGTACAGAACCCTGCTTCCAGCAACACTAAGCTGACCAATAGCTGGAAAGGGGTGAATGGACATAACCAGCTCTATCATTCGTACAAACAAGGAGGCAAATCtcagAACTGGGACACAGAGCTGCTGCTCCCTGTACAGCAGGTGGTAGTGGTGAAAAGTGAATCGGAGCCCTCGGCCATCAGCTTCATGGGAGCATTACGCATACCGgGAGTGATCGAGTTCTCTCTGTGTTTGCTGTTTGCCAAGCTGGTCAGCTACACTTTCCTCTTCTGGTTGCCGCTCTACATCACGAAAGCAGctcaCCTAGATGCCAAGAAGGCCGGAGAGCTCTCCACTCTGTTTGACGTGGGAGGAATTGTGGgggGAATCCTGGCTGGGGTCATATCTGATAAGCTGGGAAAGAGGGCCACTACCTGTGCAGTGATGCTGCTGCTGGCTGCTCCTACTCTTTATGGCTTTTCTATGATCAGTGAGTTTGGACTGGGACCCACCATCGGTATGCTGCTGGTGTGTGGAGGGCTAGTGAATGGACCATATGCCCTTATTACAACAGCAGTGTCTGCTGatctgGGAACACACAAGAGCCTGAAGGGCAACTCCAGAGCCCTTTCTACTGTCACAGCCATCATCGACGGCACAGGATCAGTAGGTGCAGCGATAGGTCCCCTCCTGGCAGGAGTGTTGTCGTCACGGGGATGGAACCAGGTCTTCTACATGCTGATGGCAGCTGACTTCCTAGCACTGGTGCTGTTGCTGCGGCTGGTGACAAAGGAGCTGACCTCTGCCAACGTGGTTAAACCTCGTTCTGGCAGCACCACAGTAGATCTCCCAGACCacccaatgatgtatataaaccctggattgctggtGCTTTAGTATGGGCCATTTGAATCCACCAGTCGGCCATATTGGCGCTCCACAGTAGGAGCAGTCTTCCATGTGAACGCATGGCAttgtacagtatttcaattaaatgtttcaaagaCAAAATTACAAGGATTTAAGTATTGTTTTTGCTGTAGTGGAGACAATAACGCTAGTAATCTCAAAGAATTAaaatttaagaaatgtttttttaatagattttttttattttttatatttagctttagctcacataatataatttaaaagtgtGCATTATGGTGTATGTAATAGATGTTTTTACAATGGTGGGGGAATACCAAGATGGAGGAATGGTGGCTTCAAAACAGCGCCCACTATTAGTCATCTAGTgtgttatttatatttatatatatgtatatgtatatgttattGGAACCACCTCATGCACTGCAACACCTTCAATTCCTTCAAATACAAAATGAAGGAATATCTACTAGACATTCCATACAATGACTCATCCCAATAACCTCTGCCATATGTCCATAATAATTATGCTGATTcgtgattttgactggctgagaaaagctgcatgCCTGTCTGTCTTGTCCAGAATCCCGACccctacacgttcattactatggcacagctggagatcgaatttcaatattgaaacaatgttgcaaatgtcagagagagagaaagcaaggtttatacaaatctccactaTTGTAAACCAACTGCTAGTCTGaaagaaatgggagataatgtctcaatgctttttatagtggagctcaagtttataaattgcctggctgggctgatgagacagtggattgcacagtgagatggaacagagtaaatagccATTTCAGCATCAtggatttagctggtggtaacttgtggaatagacactgggcTGGAATGTGTTTTTAACCAATAGTCCTCCAGGGTGAGACCCCACCCTTTGTATAAATCCCATTATTAACTGAGTGGTTCGAGCTTGAAAGCTGATTGGCTGACGGCTATGGTacatcagaccatataccacgggtatgacaaaccatttatttttactgttctaattaccttggtaaccagtttatagtagcaataaggcacctctgagtttgatatatggccaatataccacggctaagggctgtatcaagGGATTCCGcattgcgtcgtgcctaagaacagcccttaaccgtggtatgttggccatataccacaccccctcgtgccttattatTAAATAACCTTCTGCCTATCTTTGTcccgtaataataataataataattgttattATTTAATTTGAACCTCCTTTCTCTTTTTTTAAAATCTGGTTCATCATGTTTTAATTTATTCTTTCTGTAAATCTATTTGTTTCTTATATCAGGATACTTTTTGGATTTTGTTCTATAAACATTTGAAAGTGAGAAGTGCCTTAACGAGCAtctcttgtttgtttttttacctcatgcaaataaataaatcatagtCCCTGATCAAAGTCtgtttttc

Function

GO: NA

KEGG:

id description
K13783 SLC37A1_2; MFS transporter, OPA family, solute carrier family 37 (glycerol-3-phosphate transporter), member 1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU340540 lncRNA downstream 23461 77905812 ~ 77911851 (-) True G300190
TU340528 lncRNA downstream 55234 77879119 ~ 77880078 (-) False G300179
TU340529 lncRNA downstream 55554 77879119 ~ 77879758 (-) True G300179
TU340460 lncRNA downstream 65988 77829007 ~ 77869324 (-) True G300125
TU340401 lncRNA downstream 158051 77725339 ~ 77777261 (-) True G300073
TU340565 lncRNA upstream 2386 77966452 ~ 77966723 (-) True G300213
TU340582 lncRNA upstream 33611 77997677 ~ 77998710 (-) True G300230
TU340591 lncRNA upstream 50106 78014172 ~ 78014644 (-) True G300237
TU340783 lncRNA upstream 130015 78094081 ~ 78094333 (-) True G300398
TU340788 lncRNA upstream 137785 78101851 ~ 78124289 (-) True G300402
XM_036975267.1 mRNA downstream 1985 77873788 ~ 77933327 (-) True LOC110520629
XM_036975268.1 mRNA downstream 2292 77873788 ~ 77933020 (-) False LOC110520629
XM_036975271.1 mRNA downstream 2452 77873788 ~ 77932860 (-) False LOC110520629
XM_036975265.1 mRNA downstream 2453 77873788 ~ 77932859 (-) False LOC110520629
XM_036975269.1 mRNA downstream 2454 77873788 ~ 77932858 (-) False LOC110520629
XM_021598044.2 mRNA upstream 108525 78072591 ~ 78076780 (-) True LOC110520634
XM_021598045.2 mRNA upstream 120634 78084700 ~ 78096638 (-) False ifngr2a
XM_021598047.2 mRNA upstream 120634 78084700 ~ 78096638 (-) False ifngr2a
XM_021598049.2 mRNA upstream 120634 78084700 ~ 78096638 (-) False ifngr2a
NM_001361111.1 mRNA upstream 120639 78084705 ~ 78096610 (-) True ifngr2a
TU340453 other downstream 84546 77844667 ~ 77850766 (-) False LOC110520626
TU340455 other downstream 84546 77844667 ~ 77850766 (-) True LOC110520626
TU340463 other downstream 96097 77836482 ~ 77839215 (-) True pknox1.1
TU339219 other downstream 1147581 76782843 ~ 76787731 (-) True G299024
TU338309 other downstream 1768911 76166003 ~ 76166401 (-) True G298192
TU340609 other upstream 70419 78034485 ~ 78035018 (-) True G300251
TU340859 other upstream 329717 78293783 ~ 78294220 (-) True G300470
TU341782 other upstream 1139283 79103349 ~ 79107772 (-) False G301283
TU341784 other upstream 1139283 79103349 ~ 79290938 (-) True G301283
TU341779 other upstream 1258032 79222098 ~ 79223310 (-) True G301282

Expression Profile