RNA id: XM_021598044.2


Basic Information

Item Value
RNA id XM_021598044.2
length 2077
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC110520634
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 78072591 ~ 78076780 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCTGCAAAAAAAAAGAGGCTTTCCAGGGCCTGGTAGATATTTCACTGATATGTTGAAAGAATCCGGGCAACACCCTATTACCAAACCCACGCATCCTGTACAGACTTGTCACTCATTCTTCCTGCTCCCGCGTCGAAACAAAATGGCGACGGGTGGTTTATCTCGGGAGCATTTtatctgctctgtctgtctcgatGTCTTCTCCAACCCCGTCACTATTCCCTGTGGACACAACTTCTGCCAGGGATGCATACAGTCCTACTGGAACAAAGGGGAGTGCAGCTGCCCTCTGTGTATGAGAAAGTTCGCTGAGAGACCTGAGCTGGCCATGAACCATGTTCTAGACGCCCTGTCCAACACTCTCAGATTGGCGGAGCCACATCGTAAACCAGCGAAAATCTCCATTCTTCCCAGGAAAATGGCAGGGAAGTGTACATCTATAGTTGAAGAACTGGCCCAGCCAAGGGATGTGAACACATTATGTGGTGAACATGGTCaacctctgtctctgttctgcctGGATGATAAGGCTCTGATCTGCGCTCAATGTGACTCTCTGGGTCATAAGACCCACAAAACCACACCTGCAGAGGAACAGATCCCCCAAATGAAGCAGAGAGTGCTGAAAGAGCTGCTTGCCAAAAAGAACAATGTGTGCATGGTAAAGACGGAGATTCTCAAAGCCAAGAACACCATGGAGTCATTCAAGATCTCTGCCAGTCTACAGAAACAAGAACAGCAGACAAATTTCATCATGCTGATCTCAGCCATCACAGAGGAGCAGAAACAACTGCTGACCTcaatggaggagaaagagaaagagatgctGCTGAAAACAGAGAGTGAGGTTCAGAAGATGGAGAAGAGATTCAAGAGCTTGGAGGATGAGGTCACTGGGATGGAGCTCGCATTGCAGGGTGAAGAACCCGGGAGGTTGCTTCAGGATTACAATGCCCTGCAGAAAGGCTCAGTTGATGCATCTCCATACTGTGTCAGTCTGGACCCAGAGGAGAGACTTGTTCAGGCAGGAGAACTCAAAGAGAGGCTCCACAAGGAGATTGACAGGATCTGGAAGGACCAAGGTTCTGGCGCTAGGACAGCTTTACGTGTAGATCCCACAGCCTGTCGGTGTTCACTGTCAACACTGAAACAATATGAAAAGACCATCACCTTGGATCCCAATTCTGTCGGGAGACATATCTGGCTATCTCTGGACATGACCAGTGCTAGGAACACATACCCACACATCCAGCCCCACACCCTGCACCCAGAGCGACTCAAACGGAGTGAAATGGTGAGGGGTGCTCAAGGCTTCAGTAGAGGCTGTCACTACTGGCAAGTGCACTTTAAGAATCTTCCCAGTGGATCACAGGAGGACTCGTATTGTGAGGTTGGGGTGATGTACAAGGAAAACGCTGGCGAAATGAAGGAGAGTTGGCACATACGGTTTTCCACCTCTCAGACTACGCTATATGCAAATTCAGGTAAAAcagttcataccataaccactgGTAACAACTCTCTTAGCAGCATTCATGTGTATTTAGACTGTGACTCTGGAATCCTTGCTGTGTACGGTAATGTATCGAGTACTGTAGTAAATATACATAAAATTAACTTAGTTTACTCTTTCAACACCAAATTCAGTGAACCTCTGTACCCCATGTTTGTAATCCCTAAAGGGGCAGATATTAGGTTCAATTAGGGGACCCAGAATGATGAATATACCCATCTGTAGATTTGTAGTCATGGAAAAGTTGCATAATCTAAATTGTTAAGTTGGAATGCAATCTGTTTTTTGTACACTGTTATAAGAAAAAGTAAAACGGCACAATTGATAGTTGTGTACTTATTAAGCACGATGCTTGCTGTGACCGCACAGGAAATGGGACTTTACCTCATTGACGTATTAAAAGATCAATATCTTGTTTTTGCTTTTTGTTGGTACAATTTTTATCATAGATTTTCTGTAATGTCAGATTGCTGGGTGGGTGAGGGTTTAAACACTCAAAAATGTGCACTTGATGAAATTGATGGATTGAAATATCAATAAAAATGCAACGTAACAAAAAACGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU340591 lncRNA downstream 57947 78014172 ~ 78014644 (-) True G300237
TU340582 lncRNA downstream 73881 77997677 ~ 77998710 (-) True G300230
TU340565 lncRNA downstream 105868 77966452 ~ 77966723 (-) True G300213
TU340540 lncRNA downstream 160740 77905812 ~ 77911851 (-) True G300190
TU340528 lncRNA downstream 192513 77879119 ~ 77880078 (-) False G300179
TU340783 lncRNA upstream 17301 78094081 ~ 78094333 (-) True G300398
TU340788 lncRNA upstream 25071 78101851 ~ 78124289 (-) True G300402
TU340816 lncRNA upstream 102822 78179602 ~ 78180445 (-) True G300430
TU340822 lncRNA upstream 110642 78187422 ~ 78187992 (-) True G300434
TU340839 lncRNA upstream 178712 78255492 ~ 78255818 (-) True G300451
XM_036975283.1 mRNA downstream 108525 77935312 ~ 77964066 (-) True LOC110520630
XM_036975284.1 mRNA downstream 108527 77934076 ~ 77964064 (-) False LOC110520630
XM_036975267.1 mRNA downstream 139264 77873788 ~ 77933327 (-) True LOC110520629
XM_036975268.1 mRNA downstream 139571 77873788 ~ 77933020 (-) False LOC110520629
XM_036975271.1 mRNA downstream 139731 77873788 ~ 77932860 (-) False LOC110520629
XM_021598045.2 mRNA upstream 7920 78084700 ~ 78096638 (-) False ifngr2a
XM_021598047.2 mRNA upstream 7920 78084700 ~ 78096638 (-) False ifngr2a
XM_021598049.2 mRNA upstream 7920 78084700 ~ 78096638 (-) False ifngr2a
NM_001361111.1 mRNA upstream 7925 78084705 ~ 78096610 (-) True ifngr2a
XM_036975286.1 mRNA upstream 36058 78112838 ~ 78138524 (-) True LOC110520635
TU340609 other downstream 37573 78034485 ~ 78035018 (-) True G300251
TU340551 other downstream 89387 77928486 ~ 77983204 (-) True G300200
TU340453 other downstream 221825 77844667 ~ 77850766 (-) False LOC110520626
TU340455 other downstream 221825 77844667 ~ 77850766 (-) True LOC110520626
TU340463 other downstream 233376 77836482 ~ 77839215 (-) True pknox1.1
TU340859 other upstream 217003 78293783 ~ 78294220 (-) True G300470
TU341782 other upstream 1026569 79103349 ~ 79107772 (-) False G301283
TU341784 other upstream 1026569 79103349 ~ 79290938 (-) True G301283
TU341779 other upstream 1145318 79222098 ~ 79223310 (-) True G301282
TU341970 other upstream 1373308 79450088 ~ 79450472 (-) True G301452

Expression Profile