RNA id: XM_021598049.2


Basic Information

Item Value
RNA id XM_021598049.2
length 2019
RNA type mRNA
GC content 0.44
exon number 7
gene id ifngr2a
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 78084700 ~ 78096638 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGGACAGGAGAAGGGAAGTTAGTTTCTCTCAGATTCTGGGAATTGAATGTAGGTTTCGTTGAAGGTTGTTACTAATATAGTGATCTATAATAGTATGTTGCAATCCCATAAATGATCCTGATCTACTGAAATGTTGCGTCTGAACGGCGTTTTGTTGTTTTGGACTCTCTGTCATGTCCTCAGACAAGCATGGTCTGAGGATGAGCTGTCATCTCCACGGGACGTGCGCGTTGACTCTGCTGTGCATTGGAGCCCCGTCACAGACAGGCCAGGGATAAAGTACACGGTTCAGTACAGGACTGACCGCGAGAAGTGGCACAACATTTCGGGCTGTGTTCAGACCGAGCTCACCACCTGTAATATACAGTCTGGATGTGTGATGGCGCGAGTCCTGGCTCAGGAAGGGAACCGCACGTCCAGACCCGTCGAAGCCTGTCGACATGCTGATTCTTGCAGCCCTGAAGTCCAGTTGACCTCCAAGGAAGGACTTCTGATGGTCCACATGGTAAAGAACAACCGTCTACTGGAGGATAACGGAGGCCATTTTGAATACAACGTTCAATATGGCCGAGACGGGGAGGAGCTCAAAGATCTTTACACCCCCACATCCCGTATGACCATCAAACATCTGGATGTGGGCCGGAGGTACTGTGTACAGGTCCGGTATTTATGTTACCAAAAACCCTTTGGAAACCCCAGCGTTCAACATTGTGAGTCCATCCAAGAGTCAGAAAGGACAAAGAAAAAGAAGATTGTGGCGATTGGTGTGACCTCTACCATCCTGTTGGGTGTCTTGGTAGTGGGCCTTATGCTCTTCATCTACAGGCACCATAAGAAAATCAAACAGTTCCTTCAGCCCCCACTACGGTTACCAGACCACTATTGTGAGTACCTGTCAGGGGTGTTCCCCCAGCAGGCCCTGTCCCTCACAACCAGTCCCTGTGAAGAACGCCATGATCTCATCTCCATCATCTGCCTTGAAGAGGACCTGATTCCTGAGTCTGACAGAGAACAGGATTATGACTCATCTAATGGACTGGATTTCTTAGATCATTATGAATGATCCTGTTTGAGATGAACTTGATAGCGTCAGAACATTaactaggggcggcaggtagcctagtggttagcgtgttgggtcagtaaccgaaaggttgctggatcgaatccccgagctgacaaggtgaaaatatgccgttctgcccctgagcaaggcagttaacccactgttccccggtaggccatcattgtaaataagaagttgtgaACTCTAGTGAACTGATTTGCTTAGTGAAATAGTTTTATAGTAGGCCTGGCTATTGCACTGTTTCCACTCCAAAGGCTTTGCTTAGCATCAGCTACCAACATTATTGTTGATCAAAAGAAAACTATTTTACTATAAAGTAAACATCTGTGGGTATTTCAGTTTGCTCTGCAACCGGGGCCAGAGAAAGGTGCTTGTGTCTCAGTAATTACACCTACCCAGTAGCTGGATATTCATTGGATAATAATAGGTGCAATCAGGTAGTCCAGCTAAAAATAGAACCGCTTTCTAAATCATTTTAGGAAAGTGCTGAGGCTTTCTGGAAAAGTAAGAAAGTGTCCTTGGGCCAGGACTTAAATTGGGGATTTTTTGTTTGTTACATTACTGCTGTATATTACAAATCTGTACATTTCACACTACTTCtaagtataaaaaaaaataattagaaTGTTTAATGGGGTACTTTGGGATTTGAGCAATGCTAACTACCGTTAATGACCGTAGTGCAATGACCGGGAAGTtcatgggtatctgctagcaggTAATGTTACGAaccaattaaattacattttccctggggtgtactgtatgtatgttcaAATGTCTTACGTGTAAAAGTGTGTTGAGACCTATATGCTGTCACTTTATACGTTCTCCTCGTACTAATtgaatttattttttatatcGATTGTATTTCTTCTGTCAAATCCTTTTTATTACTTCATGCTGTTAATAAACGTTTGGACACAGTAaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU340591 lncRNA downstream 70056 78014172 ~ 78014644 (-) True G300237
TU340582 lncRNA downstream 85990 77997677 ~ 77998710 (-) True G300230
TU340565 lncRNA downstream 117977 77966452 ~ 77966723 (-) True G300213
TU340540 lncRNA downstream 172849 77905812 ~ 77911851 (-) True G300190
TU340529 lncRNA downstream 204942 77879119 ~ 77879758 (-) True G300179
TU340788 lncRNA upstream 5213 78101851 ~ 78124289 (-) True G300402
TU340816 lncRNA upstream 82964 78179602 ~ 78180445 (-) True G300430
TU340822 lncRNA upstream 90784 78187422 ~ 78187992 (-) True G300434
TU340839 lncRNA upstream 158854 78255492 ~ 78255818 (-) True G300451
TU340867 lncRNA upstream 211781 78308419 ~ 78308685 (-) True G300478
XM_021598044.2 mRNA downstream 7920 78072591 ~ 78076780 (-) True LOC110520634
XM_036975283.1 mRNA downstream 120634 77935312 ~ 77964066 (-) True LOC110520630
XM_036975284.1 mRNA downstream 120636 77934076 ~ 77964064 (-) False LOC110520630
XM_036975267.1 mRNA downstream 151373 77873788 ~ 77933327 (-) True LOC110520629
XM_036975268.1 mRNA downstream 151680 77873788 ~ 77933020 (-) False LOC110520629
XM_036975286.1 mRNA upstream 16200 78112838 ~ 78138524 (-) True LOC110520635
XR_005039699.1 mRNA upstream 77562 78174200 ~ 78191666 (-) False crfb4
NM_001281378.1 mRNA upstream 84507 78181145 ~ 78191496 (-) False crfb4
XM_036963669.1 mRNA upstream 84519 78181157 ~ 78191663 (-) False crfb4
XM_036963679.1 mRNA upstream 84519 78181157 ~ 78191666 (-) True crfb4
TU340609 other downstream 49682 78034485 ~ 78035018 (-) True G300251
TU340551 other downstream 101496 77928486 ~ 77983204 (-) True G300200
TU340453 other downstream 233934 77844667 ~ 77850766 (-) False LOC110520626
TU340455 other downstream 233934 77844667 ~ 77850766 (-) True LOC110520626
TU340463 other downstream 245485 77836482 ~ 77839215 (-) True pknox1.1
TU340859 other upstream 197145 78293783 ~ 78294220 (-) True G300470
TU341782 other upstream 1006711 79103349 ~ 79107772 (-) False G301283
TU341784 other upstream 1006711 79103349 ~ 79290938 (-) True G301283
TU341779 other upstream 1125460 79222098 ~ 79223310 (-) True G301282
TU341970 other upstream 1353450 79450088 ~ 79450472 (-) True G301452

Expression Profile