RNA id: XM_036975286.1


Basic Information

Item Value
RNA id XM_036975286.1
length 1848
RNA type mRNA
GC content 0.52
exon number 9
gene id LOC110520635
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 78112838 ~ 78138524 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCGGATTGTTTATCCGGTGATGTTCCATTGAACCGGGAGCAACTCAACTGGCCACAGCAACTAAAGCTGGGATTGGGAAAATGAACGATCTGTGAAGGTAGTTTTTTTGGGAAAAACGTACCGTTGGATTACTTGTTAAATAATCATTATTCATCATGAAGGTGGGCTTTGCACTCgttctcctctggtctctcccAATAACCAATGTGCTTGCAGAGCTGCCTCAACCTCAGAACCTGACTCTGctcaccctgaacacacagtatGTACTGACGTGGGACTGGGACCAGACGACCACAGGCAACTCTGTTAGCTTCACTGTAGAGTACATGGCGAAGTACAAGATGAAGATGAAGAAGAACTGGAGCCGTGTGTGTGAAAGGACCACACGCACCCGCTGTGACCTCACAGGTTCTAATCTGCGCTACCTGGGCGTGTACGTGCTCCGAGTCCAAGCCAGCGCAGACGGAGTCAACTCGGACTGGGTCAACAAAGACTTCTGCCCTCATAAAAACgTGCTTGCAGAGCTGCCTCAACCTCAGAACCTGACTCTGctcaccctgaacacacagtatGTACTGACGTGGGACTGGGACCAGACGACCACAGGCAACTCTGTTAGCTTCACTGTAGAGTACATGGCGAAGTACAAGatgaagatgaagaagaagaagaaggaggactGGAGCCGTGTGTGTGAAAGGACCACACGCACCCGCTGTGACCTCACAGGTTCTAATCTGCGCTACCTGGGCGTGTACGTGCTCCGAGTCCAAGCCAGCGCAGACGGAGTCAACTCGGACTGGGTCAACAAAGACTTCTGCCCTCATAAAAACgCTTCGTTGGGCCCACCGTCCAGGGTGGAGATGGCTCCTGTGGGGAACCTGCTGAACGTGACCATCTCTGACCCCCTGACCAGCACCCAGCACTCCATGAAGGAACACGTCTTCTACCTGGACTACCGCATCCTGTACTGGAGCCGCTTTGATGACCCTCAGGGTCTGAAGCCTAAAGTGTTGGACTCTAGCAACAACCTGGTGACGCTGCCTGAGTTGGAGGCCTGGACGTGGTACTGTGTCATGATCCAGTCTCGCTACGACTACTACAACAAGACTAGCAGCTACACAGAACCCCAGTGCATGCAGACAGAGGGTGACACCCCGTACGGGCAGATCTTCCTGTACTTCCTGGTCTCCATGATGGTGTGTTTCCTGCTCGTGTTGCTTTCCTCCTACGCCTTCTTCAGGTTCTACAGAGTCCTCAAAAACACCTTTTACCCCTCTATCCAGCTGCCTGCACACATCCAGGAGTACCTCTGTGACTCCTCCCCCGGCTCCGACATGCCCCGCCTCCTCACTGCTGATTCAGAGGCGGAGCTGTGCTGTCATAAGCTGACCATCTGTTCTGAGGTGGTGCTACTGGAGATACACGTCCTTCCTCCCCTCACAGCGCCCCCCTCAGAGCTGGGTCAGGACAGCGACAGGCACATCTGCCAGGACAGCGGAGACTCTGGGATCTGCTCCACAGAGGGAGGCTCCACCCAGCAGGGTCGTAGTTGTGGGGAGCCAATCAGGACAGACCAGGAAGTGGATTCCTGGCAGACACTGGCGCAGGCCaagatggaggagatggggagagacgtCATATCATGAAAGTCCAATATTTTTGGAAACTTGTCTGTTGACATGTTTAACATTTTGGGACTATCAAATACCTAAATCTTTTTTTAATGGATTATTTTATTTATGCAACAGGATGGCATGTTATTCATGTGATTCTGGCCTTTTAGTATACCAGTACACTGTCAGCTGCCTGGGTTGGCCTGGGAATCCCATGTTGCTGTGTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU340783 lncRNA downstream 18505 78094081 ~ 78094333 (-) True G300398
TU340591 lncRNA downstream 98194 78014172 ~ 78014644 (-) True G300237
TU340582 lncRNA downstream 114128 77997677 ~ 77998710 (-) True G300230
TU340565 lncRNA downstream 146115 77966452 ~ 77966723 (-) True G300213
TU340540 lncRNA downstream 200987 77905812 ~ 77911851 (-) True G300190
TU340816 lncRNA upstream 41078 78179602 ~ 78180445 (-) True G300430
TU340822 lncRNA upstream 48898 78187422 ~ 78187992 (-) True G300434
TU340839 lncRNA upstream 116968 78255492 ~ 78255818 (-) True G300451
TU340867 lncRNA upstream 169895 78308419 ~ 78308685 (-) True G300478
TU340868 lncRNA upstream 171001 78309525 ~ 78309808 (-) True G300479
XM_021598045.2 mRNA downstream 16200 78084700 ~ 78096638 (-) False ifngr2a
XM_021598047.2 mRNA downstream 16200 78084700 ~ 78096638 (-) False ifngr2a
XM_021598049.2 mRNA downstream 16200 78084700 ~ 78096638 (-) False ifngr2a
NM_001361111.1 mRNA downstream 16228 78084705 ~ 78096610 (-) True ifngr2a
XM_021598044.2 mRNA downstream 36058 78072591 ~ 78076780 (-) True LOC110520634
XR_005039699.1 mRNA upstream 35676 78174200 ~ 78191666 (-) False crfb4
NM_001281378.1 mRNA upstream 42621 78181145 ~ 78191496 (-) False crfb4
XM_036963669.1 mRNA upstream 42633 78181157 ~ 78191663 (-) False crfb4
XM_036963679.1 mRNA upstream 42633 78181157 ~ 78191666 (-) True crfb4
XM_021598057.2 mRNA upstream 69949 78208473 ~ 78220726 (-) False LOC110520638
TU340609 other downstream 77820 78034485 ~ 78035018 (-) True G300251
TU340551 other downstream 129634 77928486 ~ 77983204 (-) True G300200
TU340453 other downstream 262072 77844667 ~ 77850766 (-) False LOC110520626
TU340455 other downstream 262072 77844667 ~ 77850766 (-) True LOC110520626
TU340463 other downstream 273623 77836482 ~ 77839215 (-) True pknox1.1
TU340859 other upstream 155259 78293783 ~ 78294220 (-) True G300470
TU341782 other upstream 964825 79103349 ~ 79107772 (-) False G301283
TU341784 other upstream 964825 79103349 ~ 79290938 (-) True G301283
TU341779 other upstream 1083574 79222098 ~ 79223310 (-) True G301282
TU341970 other upstream 1311564 79450088 ~ 79450472 (-) True G301452

Expression Profile