RNA id: XR_005039699.1


Basic Information

Item Value
RNA id XR_005039699.1
length 1426
RNA type mRNA
GC content 0.48
exon number 9
gene id crfb4
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 78174200 ~ 78191666 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cattaAGCCTAAAGGTTTTTTCCGACATCGACTAAACTTGCTTCAATGGAAACCTGCCCGGGCTTCTTCTGTATTTATATCACTCAGCTTGGTTTCGCTTCCCCGCAATTCTCCGCCCTTTCAGAAAGTACACAATAAACTCTCAAGATCGGCCTGAAGCAAATATAGCGAACATTTCAGTGTCGCTGGACTACACAGAACATCTCTCGGGCAACATGCAATCTACGGTGTTTACTATCTTGTTTGTCAAACTATTATGCTTAACTTTACATGGAATGACAGCAGTGTTAGCTGAACTTCCAAGTCCCAGTAACATCAGAATTACCTCCATCAACATGGGACTAGTGTTGGAGTGGGATCCCCCTCAGAAccacacgggaaacctcacctaCAGATCAGAATACAAGGGGAAGAGCATCAGGAACAGCTACCAGGTTGTATGTTTGGACACAACTGCCCTATGCTGTGACTTCACCAGACATCTAAACAAATTTGGAGTGTACACTTTCCAAGTGAGGgcagaacgagagggagagacatcTCACTGGGTGGAGACTAAGGAGTTTGTCATGGATGAACACAccACTTTAGGCCCTCCCAGTGTGACTCTAGTCTCCAGTGGTGCGAACATTGAAGTGAGCATCGAAGACCCAGTGCTCAGGATCTCTGAGTTTAAAGAGATCTACAATCATGCAACCTTTAACGTCGCCTACTGGAAGGAGGGCCAGGAGAAGAAGGTCACACGGATGAATGGCATCCAACTGCATGAAGTGGTGTTGGAGCTGGAGCAATGGACCAGGTACTGTTTTCAGGTCTGGGTGGTAACCGAAAGGTTCTTCAAACAAAGCCAGCCCAGCAACGTTACGTGTGAGAGCACCGCTAAGGCCAAGGACAGGCCCTGGGTGATGGCCCTGGGGATGTTTGTGGTGATGGCTGTGTCTGTGCCCCTGGTGGTTCTAGCATTCTGGCACTGCTACAGGGTGGTCCGCTTCCTCAGACCCAAGGTCAAGCTGCCTGGACATTTCACAGTGTACCTGTTGGATCCTCAGTGCTCCTCCATCCTGGCCTTGCAGAGCAGCCCCCAGCCTGATGAGGTGTACCATGAGGTCCttccaacctggactcaggggtagacggaacatagtaaacgtaaagcTGTAACAATCAAATGAGTATCATATGTTACCAcagTCTTGTGCGATCACACTCTCTTAGGAACCAGAAGAAGAGAGTGGAGAAACACAAAAGCGTTCCAGCTGACATGGAACAAGACAGCAGGTTCAGCTGGAATGTCATTTTGCTGTGTGATGAGAGACGGAAATACAATTGTGTGCGGTGTGATCATAGAACAGAGGCCATCAGGCTCTACGCTTGTAAACCTCACGGCGAATGTTTATCATTGTTTGttcatttaaatatatttaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU340788 lncRNA downstream 49911 78101851 ~ 78124289 (-) True G300402
TU340783 lncRNA downstream 79867 78094081 ~ 78094333 (-) True G300398
TU340591 lncRNA downstream 159556 78014172 ~ 78014644 (-) True G300237
TU340582 lncRNA downstream 175490 77997677 ~ 77998710 (-) True G300230
TU340565 lncRNA downstream 207477 77966452 ~ 77966723 (-) True G300213
TU340839 lncRNA upstream 63826 78255492 ~ 78255818 (-) True G300451
TU340867 lncRNA upstream 116753 78308419 ~ 78308685 (-) True G300478
TU340868 lncRNA upstream 117859 78309525 ~ 78309808 (-) True G300479
TU340871 lncRNA upstream 124943 78316609 ~ 78316836 (-) True G300482
TU340874 lncRNA upstream 133579 78325245 ~ 78325569 (-) True G300484
XM_036975286.1 mRNA downstream 35676 78112838 ~ 78138524 (-) True LOC110520635
XM_021598045.2 mRNA downstream 77562 78084700 ~ 78096638 (-) False ifngr2a
XM_021598047.2 mRNA downstream 77562 78084700 ~ 78096638 (-) False ifngr2a
XM_021598049.2 mRNA downstream 77562 78084700 ~ 78096638 (-) False ifngr2a
NM_001361111.1 mRNA downstream 77590 78084705 ~ 78096610 (-) True ifngr2a
XM_021598057.2 mRNA upstream 16807 78208473 ~ 78220726 (-) False LOC110520638
XR_002473015.2 mRNA upstream 16807 78208473 ~ 78220726 (-) False LOC110520638
XM_021598055.2 mRNA upstream 17977 78209643 ~ 78220726 (-) True LOC110520638
XM_036975289.1 mRNA upstream 27536 78219202 ~ 78226523 (-) False LOC110520637
XM_021598053.2 mRNA upstream 27536 78219202 ~ 78227422 (-) False LOC110520637
TU340609 other downstream 139182 78034485 ~ 78035018 (-) True G300251
TU340551 other downstream 190996 77928486 ~ 77983204 (-) True G300200
TU340453 other downstream 323434 77844667 ~ 77850766 (-) False LOC110520626
TU340455 other downstream 323434 77844667 ~ 77850766 (-) True LOC110520626
TU340463 other downstream 334985 77836482 ~ 77839215 (-) True pknox1.1
TU340859 other upstream 102117 78293783 ~ 78294220 (-) True G300470
TU341782 other upstream 911683 79103349 ~ 79107772 (-) False G301283
TU341784 other upstream 911683 79103349 ~ 79290938 (-) True G301283
TU341779 other upstream 1030432 79222098 ~ 79223310 (-) True G301282
TU341970 other upstream 1258422 79450088 ~ 79450472 (-) True G301452

Expression Profile