RNA id: XM_036975287.1


Basic Information

Item Value
RNA id XM_036975287.1
length 3987
RNA type mRNA
GC content 0.45
exon number 8
gene id LOC110520637
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 78219202 ~ 78227426 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atacagttttctgttcccaaaactagaatctgttgtAAACAGAGTGGACTACGTTTTGTAGACTTTAACATTTGCCAAAGTTgtaaaaaaatgcattgtttagAAGGAACGCAAAGACGAATTtagttattgcacacgcgcacttcacCGAGTAGGGTTCCCTAACATGAATATGCAGATATCTGCTAGAACCGGCGAATAGGATCTCATCTCAAtatgactcatttgttcccattGCAAATGGCAGGCcctggtctatcttggtttagttaaaGAAATATTTGCCCCATTGCCTTTTGGGGGCGTTCGACCTGGTTATCATGTGATTTCACAAAAACGAGTGACGTTTGGAAAACACAAGTGACCGGAAGAATTACTAGTATTCACAGCACGGTCAGACTGTTTATGTGTTTACATGTCTATTTTCTCTTCTGCTTTTACCCACGGCGGGAAATATCACGTTCTTTGAAAGGGATTCATCAAGGAAGGCATATCTTCAGAACATTGACCAACAATGGACCAGTCCTCTCGATAATTTTTTTAAAGGTTTTAGGAATAACAAGATATGAAATATTTCCTTCTAACTATTTACTTGATGTTGCAGTGTTTTTATGCCCTGTGTACCCTCCCTGCTCCGGTCAATGTTACCATCGATTCTCTCAACTTCCACCATGTTCTCCGCTGGATCCCTGGGCCAGGCACACCACCCGGGACCATGTACAAGATCTTACACAGagaaaacaacatgaCCCTACAGCTACAGCATCAAACCAACATGACAAATCAGAAGCTGGATCTGAAGTACCCCAAAGAAGAATACAGATTGTGTGTTCAGGCTTCCCACGAGCTCTTAGAGTCGCCCCTGACCGTGATCACCTTCACCCCCTACACACAGACTGTTATTGGTCCTCCGACATTGTCTTTGGATGGATGTGGCAATTGTCTGGTAATCAACATCACACTGCCTGAGATGGAAACCATTCAAAATGTCTATGGGAGCACCGTATCCTTTCAGATCGACtggaagagagcaggagagactCGGATCAAAGAGACCCGTACAACTCATTTAAGTTATATGCTGGAGAACTTGAAGGTGGGCGCAGAGTACTGTGTGAGGGTGCATACGATGATCACCACCAACCAAAAAACACAGCTTTCTGAGTGGAAGTGTGCACACACCAGTATTGTGGAGGCTAACAGAGTGCACCTTGGATTGGGGTATAACCATGACTTGTCCCCCCCAGTCCCTGCTGTTGTAGCTGGGGTGTCGGTTCTCCTCATTGTGAGTGGGGCAGGCCTGATGGTTCTCATGTTTGTCTTGTTCTACACGGGGTTCTTGTGCAAGTTGAAGACCCACCTGCCTAGATCACTGACTGACCTGGTTGAGGGCTACCTAGTCACCCCAGAGAGAACAGTTCCTGACCTGGTCTCCATATCCTCTGAGCCAGAGCAACAAGGGAAGGCCCTCACAACAAAAGCACACCACAACAGAGAGAACTCAAACCGagcaggggaggaagaggaggaggaggaggatgaagagaaggaggggggaaacGGCACGGTCTACATGGACCGCGATGCGGGGCTCTCCTTTGATAGCAGCTCCAGCACCATACAGTCCCAGGAAGCATCAGGGGCTAATGTTGCCCTTCTTAACGTAGCAGGGCATTCTGGGGGGTTGAGTTTTGAGACAGcagctgaggaggaagaggaagttcCTGTGGGTGTGGTGGTGCTTGGAGGTCAGGGTCAGAGCGAGGTCAAAGGTGAACTAACGAAGGTCATTTCCAGCCTAGACGGAGATCAACCCAGACCTCTGGGACTTGTAGGgttgggtggagaggaggagaaagagatgagggaggtggagaaagagatgagggaggagaccTCTGGTAACGTCAATCTGTTCTCTGTGACTCTGGGGGCTttaaagagggaggaggaggaggagcatgaGACAGATGTTTTATTAGGCTGTTCCAAACAGGAGCAGAAGCCTCTACTTCCCATAGACTCCTTACAGAGGACATTAGGACTGGACAGCATGGGATCACAGGGTGAGATACAGGAAGATACAGGCCTAGTACTGACACCGTCACGGGCAGACTGCACACACAAATACTTTGAATATTCAGATAGACATGCTGTCAGCTGTACAAAGACATACTCTGACTGCCTGGTAACGCACACTGGCACTGTGCAGTCTCACAatgagacagaggaagaggaagaagaagactTCTCAGGCTATATGGGACATTGATGCGTGCGTGCGTAGCGTGGTTCATTCTGCGTTGTGTACTTTTAATTAGGACGCTGCCACAACTGAAGGTCTGCTAGTTGAATTATTTTGATTTGCCCTGCACatgaagagacaacacacattgtGTTAACCCTTGGCGCAGTCCTAGCTCTCAGACACCTGCACatgaagagacaacacacattatgttaacccttggcaCAGTCATAGCTCTCAGGCACCTTGCTAGCCGAAGGTCAGGCAAAGGAGAACAATAAGGGGGTATGGAAATACAGATAACCCGCGACAggccaaaccaaaatatacaacatTTATTATCAAATTATTAACATCCCCTCTAGACCTGGCCTATTTGAATTGGTCCTTGTGTGCAACTTGGTGCATAATCTAGGGGAACAACATCGCACTGCTACACATGCGTTCCGTGTAGGCCTACAGTGTAAGTGTTTTAGCCGATAATTGCACAGCTATTCCACTTGGTTGGATATGCCTTCTATCACGTCCATTCCTTCCCAAATATTGTCTTCTGTTGAGAATGTGTGTAAAACAAAGGTATTCACACTTTCCCGATCCTCACCCCAAAACGGATGACAGCCTTAAAATGTCTCTACGTGTTATCAGGATTCTGTTCATTCAGATACACTTAATTTTTGAAATGATCTTTCTCAAAAACGTTTGTATATTGTCAAATACTATAGCATGTACtattcatttgtatttttttttgttatttggtGACATTAATGCAGTTCCTCCAGCccgactttgaataccactgatGTGTCCGTTTCATTCATTGTAATGTACGTGCAATTTTATGAAAGAAGAATTAGAGCTCAATGATCAAATCGTGACCCGGTTTTTGTGTAGAATGTGTGTTTTTTAGGCTATTGTTTCTAAAAGTTATTATGTGGGAAATTCCTTGATACGTCGAGACTTGTATGTCATGTTAAAGTACACTGCTCTCTAAAAAAAAGAAATGCTTAGTGTGAAACAATGTCCCCCAGGAAAAGCCAATCCGTTCTTATAAAGATCTGTGGATGGTTGCTCAACATTGTCGTCATTTCCAGCAGCAGCGTTgttatgccgcgttcaaaacaactgggaactcggaaaaatacGAGGTCGATGATCTTCATGTGAGAAAATCTGatctctagaaagaggcccgggTTTCCgatttggaattccgagttggatgacggTTCGAAATGATTTTCCCAACCGTAACTCGTTTTTTAACGCCTGTAAatcggagatttccgagttcccagttgattTGAACGCGGCAAAAACCTTTTTGTATTTCTACAAGCTGGCAAGGCAGCAGTTACGGAAAGCACCCCAATTGTGGCAGAGGACTGGCTCTTCTTGTTTGACTTTCTGTTGCCAACCAGGCAGAAATGTCATCTCATAACGGTAGCTATGTTTTATTGTAATTGCATTATGCTTGGCGTTATCAAAGGATATCCACTGTTTGGCCTAGGCTTTGTTAGCGAGAAGCTAACGGACTCGTGGTATTAGTGGAACCGACAGCTAACTGTTGTTTTACTAGCGGTTATCGTGTTTTGTTCTTACTATCTCTCTGCACGTTTAGTTTGGGTAATGTTGATGTAGCTAGTTGGCAGGGGTGTAAAAAAGACTAAGTACCACTTAACGTTACCCCCATAAAACTACTTATCTGCtttactattttttattttttgacaactttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU340822 lncRNA downstream 31210 78187422 ~ 78187992 (-) True G300434
TU340816 lncRNA downstream 38757 78179602 ~ 78180445 (-) True G300430
TU340788 lncRNA downstream 94913 78101851 ~ 78124289 (-) True G300402
TU340783 lncRNA downstream 124869 78094081 ~ 78094333 (-) True G300398
TU340591 lncRNA downstream 204558 78014172 ~ 78014644 (-) True G300237
TU340839 lncRNA upstream 28066 78255492 ~ 78255818 (-) True G300451
TU340867 lncRNA upstream 80993 78308419 ~ 78308685 (-) True G300478
TU340868 lncRNA upstream 82099 78309525 ~ 78309808 (-) True G300479
TU340871 lncRNA upstream 89183 78316609 ~ 78316836 (-) True G300482
TU340874 lncRNA upstream 97819 78325245 ~ 78325569 (-) True G300484
XR_005039699.1 mRNA downstream 27536 78174200 ~ 78191666 (-) False crfb4
XM_036963679.1 mRNA downstream 27536 78181157 ~ 78191666 (-) True crfb4
XM_036963669.1 mRNA downstream 27539 78181157 ~ 78191663 (-) False crfb4
NM_001281378.1 mRNA downstream 27706 78181145 ~ 78191496 (-) False crfb4
XM_036975286.1 mRNA downstream 80678 78112838 ~ 78138524 (-) True LOC110520635
XM_036975293.1 mRNA upstream 7613 78235039 ~ 78240169 (-) False LOC110520639
XM_036975291.1 mRNA upstream 7613 78235039 ~ 78241044 (-) False LOC110520639
XM_036975290.1 mRNA upstream 7613 78235039 ~ 78241184 (-) False LOC110520639
XM_036975292.1 mRNA upstream 7613 78235039 ~ 78241184 (-) False LOC110520639
XR_005051386.1 mRNA upstream 7613 78235039 ~ 78241184 (-) False LOC110520639
TU340609 other downstream 184184 78034485 ~ 78035018 (-) True G300251
TU340551 other downstream 235998 77928486 ~ 77983204 (-) True G300200
TU340453 other downstream 368436 77844667 ~ 77850766 (-) False LOC110520626
TU340455 other downstream 368436 77844667 ~ 77850766 (-) True LOC110520626
TU340463 other downstream 379987 77836482 ~ 77839215 (-) True pknox1.1
TU340859 other upstream 66357 78293783 ~ 78294220 (-) True G300470
TU341782 other upstream 875923 79103349 ~ 79107772 (-) False G301283
TU341784 other upstream 875923 79103349 ~ 79290938 (-) True G301283
TU341779 other upstream 994672 79222098 ~ 79223310 (-) True G301282
TU341970 other upstream 1222662 79450088 ~ 79450472 (-) True G301452

Expression Profile