RNA id: XM_036975293.1


Basic Information

Item Value
RNA id XM_036975293.1
length 4148
RNA type mRNA
GC content 0.47
exon number 2
gene id LOC110520639
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 78235039 ~ 78241184 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agaaagggatgatttggagaggcagagagggagagagggatgatttggagaggcagagaaagagaaagagagggaggattcAATGGGTGCTTGCGGCCGCATGCGGAACATGATGTCAGAGGAATGTCCTGCACCGCTCCTCATAGCTGACTGGAACAGCagccaccttcctctctctctccctccccgtctcccttTCCTTCAGCATCCGGCCCAGCAGCTGGAGCTTGAAGCTAATGAAGGGAGTggaagggaagaagggagagagacagagggagaggcaaCGTTTGGTGTGACataaagagagggggataagTTGGACTGGGACATTAAAGGAGTGGGAAGGaagggaacagaacagtagtctgtaaAGCTGCACTGAGCTCTATAGTAATGCAAACCTGTGAGTCATGGCTGTGGTCTGTATAggaatggaacagaacagcagTCTATAGAGCTTGGGCTCCGGTAATGTAGACTGGGCTGTGGTCTGTGTACTTAGCAGGGATCCGGTGACTGAAGGATACAGAGGCTACATGGAGCAGTCAGACACCTTAGCACAGAGTGGGAATTTGCTTACAGGCTTCAGGATATCCACTCTGTGAAGATGTAGTCCATTTGGTTTCCGTGGAGATGTCTCTAAACAGGGCCTCCTCTTGTCGCTTCCCTCCTGCCCTGTTGCCGTGGCTACTGTGGACTCTGTGGGTTCTACTCCTCCCCACGGCCGTCCCCACGACCGTCGCCTCGACCACGGGCCCCGGCAACAGCACCCTGCTCTTCAACAGTGCCGCCCACGGCAACAGCCTGCGGAAATGCAGCTGCTCCACCCACATCCAGGATTGTGACGAGGCGTTGGCAAACCTGCTGTGCAGCTGCCGCACCATGTCGCACTCAGAGCTGACCCCTGGGGGCCTGAGGGAGCAGGGTAGCTTGACCATGTGGCTCAGAGAGCCTTGGGTCCTCACAGAGCTACTGaatgggagtgtggtgccagacCTGCGCCTGTCCTACTGTGGACCCGGGTCCCTGGCCATCCCCACCCAGTACCTGGCCCTGTTCGGTCTCCGTAGGCTGAGGGTCCACAGCGCTGCCCAGGGTGCCCCACACCCGGAGCAGGTCCTCACAATCGCCTCTGGGACTGAGGATATAGACGGGATGGGGTCcctagcctccactgacccctcGTCTTCTATCCTCCATGTCTCCTTCCTGGATGTAGCGTTGCTTAATGGCTTATCGTCCCTAAAGGCCTACAGTGTGAGCGCCCCTCCCATGCCCACCCTCTCCCAGTACTTCCCCCACCTGCCCCTGTACCCCTCCACCGCCTTGGACCAGCCCctgtacccctccacccctctggaCCAGCCCCCAGACCCCCAACAGGACTGCATCTTCACCTTCATCTACTAGACCTGTAGGCTCTGAGCAGAGAGCAGGGCTGGGTCAGTCCCTCAGCTAAATAGATCTATGGAAACTAGTCTGGGCTGGATGGATAACACTGAAGTGGTAAGTGCAAGAGCTCCATTCACCCTGATGTTACTGAATGGACTTGATGTGCAGAGAGCTATGCTGCTTTTCAATTTGTTTCTATATAGTGCGTTTCTACGCTGCAGAAAACACTATTCCAATATCCACAAGAAGACTCTggacaagacaagacaaccatctctgagaagaagaaggaggcaTCTTGCAGTATCAATGCAAGAGCAAGGCAGAGAATAAGAGATGGAAAGAGACTGAGAAcgagacagagaacgagacaaGGACGGCATCCGTCTGCTGCCCTAAAGACTAACAGAAAGTTTGTAGGCCTGCTGTTATGAATGCTATCTGACAGTTAGCTTGTAGGCCTGCTGTTATGAATGCTATCTGACAGTTAGCTTGTAGGCCTGCTGTTATGAATGCTATCAGACATTTAGCTTGTAGGCCTGCTGTTATGAATGCTATCAGACAGTTAGCTTGTAGGCCTGCTGTTATGAATGCTATCTGACAGTTAGCTTGTAGGCCTGCTGTTATGAATGCTATCTGACAGTTAGCTTGTAGGCCTGCTGTTATGAATGCTATCTGACAGTTAGCTTGTAGGCCTGCTGTTATGAATGCTATCTGACAGTTAGCTTGTAGGCCTGCTGTTATGAATGCTATCTGACAGTTAGCTTGTAGGCCTGCTGTTATGAATGCTATCTGACAGTTAGCTTGTAGGCCTGCTGTTATGAATGCTATCAGACAGTTAGCTTGTAGGCCTGCTGTTATGAATGCTATCAGACAGTTAGCTTGTAGGCCTGCTGTTATGAATGCTATCAGACAGTTAGCTTTGCCAGCTGCTCTTTTCTTCAGTTATTCGGTGCAGATGGCCTATTAAGGCATGTTGTTTTGAAGCAGGTTACCATGGCTCCCCTATAAATGGGTCTTCCTGGTTGGAACCCTAATGGATCGTCAGGTCATGTGACCGTTCTTAGTTGAACTGTACGGTTGTGGACCCACCTTAAGCTGGACTTGGTTGGGTTTGTAATTCAAGATGAAGCTGAGGTAGAAGCCTTTTGTACTGTTGTGCTCTGGTGACTGGGTCCGTCCGGTCCATGCTGGATTGATTACATCACTGTGTTTCTGGTGTTCTAGAATACAGGGCTTGTCCTGGAACGGCCTTGGTCTCACCCCTATGGTCCACAATATGTCATTCTGCTCATGTCCTAGAATGAGCATGTCTGTACCCTTTTAGTTTTTAAGTAATACCCTGGCCAGGAATTAGACCATGTTAGTAAAAGTTAATACATCTTAcccttggtttaaaaaaaacaaaataattaataagaggggggagaaggaacaTCACAAGAGGTGTTAGGAAATATTTTCTGATCTCCACAACTCAAAAAACAAAATAGCTATATATGTTCTATTTTCAGCTGACATCCGGAGAGAGACATAGTCATATCATTCATCTAAAACCACCCTCACAAACCGACTGCAGCCAACACTTCTGTtctgcgtgtgcgtgtgcctAGGCGTGCAAGTGTACATGCATATTCTTATATACGTCTTGTAAATAATTGTTGAAGATGGGTGACGTGACGCTTCAGTTCCTCTGCCTGCCCTGTGGTGAGCAATGGTGGGTATTTTCTAGATTATGTCACTCCAGAACACACTCACTAATGACAGTTGGGAAATTAAGTTTTCTGGATTAGGTCACTCCAGAACACACTCACTAATGACAGTTGGGAAATGAAGTTTTCTAGATTAGGTCACTCCAGAACACACTCACTAATGACAGTTGGGAAATGAAGTTTTCTAGATTAGGTCACTCCAGAACACACTCACTAATGACAGTTGGGAAACAAAGTTTTCTAGATTAGGTCACTCCAGAACACACTCACTAATGACAGTTGGGAAATTAAGTTTTCTGGATTAGGTCACTCCAGAACACACTCACTAATGACTGTTGGGAAGTGAAGTTTTCTGGATTATTCTACATtgacatgacactacaacattcagACGCATCAGATCCCAACCAGGTCCATGTATTTAAGAGAGCTGGCAATGTTTCATGTGGTTTCTAATTCTACACATTCGGTTATATAGCATTAGTGGAATAGTAAAATATTGCctatgtcatgttaatgaggAGCGAACACATCTCGGATACAATCTCTCAAGCACAGGCTCTCTCTGTAGAGACAAAAACCTGACGCTGGTGCTTCCCATTGGGGAAATTTAGGTCACACCTCTGGGGAACCATTTACTGTGGATTAAACATTTAGGCTAGGTCGTCACAAGATGTGTCGCTCCTCACGCTCACTGTCTGCACCCTAAAGTATATCTCAGTCACTCACAATCCGGGCAGAACGATCCACGAGCCTCCGTAGCAGGGGATGGGTGTTTGTGTTTCATGTCATGTTTATTAACTAGTGTTTGCTACTTTGATTTTAAAGCACCTTTTGATTCAAGCACTTTTTTTCTTCACTGTATCATATCAGGATATTTTTTGAAGGTATATACACTTGAAATTTGAAGTTTCAatagaccttagccaaatacgtttaaactgAGTTTATCACacctcctgacatttaatcatggTAAAAGTTatctgtctaaggtcagttaggatcaccactttattttaagaatgagaaatggcaaaataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU340822 lncRNA downstream 47047 78187422 ~ 78187992 (-) True G300434
TU340816 lncRNA downstream 54594 78179602 ~ 78180445 (-) True G300430
TU340788 lncRNA downstream 110750 78101851 ~ 78124289 (-) True G300402
TU340783 lncRNA downstream 140706 78094081 ~ 78094333 (-) True G300398
TU340591 lncRNA downstream 220395 78014172 ~ 78014644 (-) True G300237
TU340839 lncRNA upstream 15323 78255492 ~ 78255818 (-) True G300451
TU340867 lncRNA upstream 68250 78308419 ~ 78308685 (-) True G300478
TU340868 lncRNA upstream 69356 78309525 ~ 78309808 (-) True G300479
TU340871 lncRNA upstream 76440 78316609 ~ 78316836 (-) True G300482
TU340874 lncRNA upstream 85076 78325245 ~ 78325569 (-) True G300484
XM_036975287.1 mRNA downstream 7613 78219202 ~ 78227426 (-) False LOC110520637
XM_036975288.1 mRNA downstream 7613 78219202 ~ 78227426 (-) True LOC110520637
XM_021598053.2 mRNA downstream 7617 78219202 ~ 78227422 (-) False LOC110520637
XM_036975289.1 mRNA downstream 8516 78219202 ~ 78226523 (-) False LOC110520637
XM_021598057.2 mRNA downstream 14313 78208473 ~ 78220726 (-) False LOC110520638
XM_036975312.1 mRNA upstream 1732460 79972629 ~ 79987627 (-) False LOC110505446
XM_036975302.1 mRNA upstream 1767716 80007885 ~ 80248467 (-) True LOC110504879
XR_005051392.1 mRNA upstream 2068250 80308419 ~ 80335869 (-) False LOC110520643
XM_036975303.1 mRNA upstream 2068252 80308421 ~ 80335869 (-) True LOC110520643
XM_036975322.1 mRNA upstream 2176780 80416949 ~ 80421159 (-) False LOC110520645
TU340609 other downstream 200021 78034485 ~ 78035018 (-) True G300251
TU340551 other downstream 251835 77928486 ~ 77983204 (-) True G300200
TU340453 other downstream 384273 77844667 ~ 77850766 (-) False LOC110520626
TU340455 other downstream 384273 77844667 ~ 77850766 (-) True LOC110520626
TU340463 other downstream 395824 77836482 ~ 77839215 (-) True pknox1.1
TU340859 other upstream 53614 78293783 ~ 78294220 (-) True G300470
TU341782 other upstream 863180 79103349 ~ 79107772 (-) False G301283
TU341784 other upstream 863180 79103349 ~ 79290938 (-) True G301283
TU341779 other upstream 981929 79222098 ~ 79223310 (-) True G301282
TU341970 other upstream 1209919 79450088 ~ 79450472 (-) True G301452

Expression Profile