RNA id: XM_036975312.1


Basic Information

Item Value
RNA id XM_036975312.1
length 2632
RNA type mRNA
GC content 0.37
exon number 6
gene id LOC110505446
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 79971886 ~ 79987627 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtagggatttattaaaacatgaataaccaccacgctgcgctttggtccgcttctcttcctcctacaggcgaacgcccttacagaatcacccaccaccaacggaccaagcagcgtgttaacAGACAGGAGCCACAGGAGaggcaacagaggcagcagcagcaggagcagcagcagctgcagtgggagaggctgcaccacctggagaaatggacatgggaggaagaactggacggtggcggtaatgcaccattTATTAGATGCCCACCGCCGTTAAACCTCATTGAAGAAGAAGACAAGACGACTGACGACATGGAAACGTTTGAAGAGGACAGCTTGAACATCATTTTTGGTAAAAAACAAATCGTTGCTGTCAGAGTTGTGATGAGCGTCCCTGATAACGTAAGTGCTGTGCGGACTGCTGTCGTCGTGACGCACGGGACTGGAGGGGACGTCAACCTAAAGCGTTTGGTTTCTCTGGCTCGTGTGCTTGCGTCGAATGGTCTGCTATGTCTTCGCTTCACGTGTAAAGGTTTAAACCTGGTTTACAGAGTGAAAGCTTACAATGCTGTTTTGGAACACTTGAAATATCTTAAGAAATTCACAATCAGACAAATATTCTTTGTTGGACGTTCTCTAGGGGCTCGAGCTGCCTCTGCCCTGGCCAGGCAGCTCAGTGTTCGACCAGAGGATGCAGTAGCAGGCCTCGTCTGTCTGTCCTTCCCCCTACACCCTCCAGGACAGACCCACGGCCATCGCCAGCGGAGTGAGGACCTCCGGGGGTTGCCTACGGAGGTGCCTGTGTTGTTTCTGTCTGGCACTGCAGACAACATGTGTGAGAAGATCCTTCTGGAAGATGTCGTTAAAGAGATGAGATGTCCAACGACTGTTCGCTGGGTTGAAGGAGGCAACCATGGGCTGATAGtgaagggaaggacagaggagtCTGTCCAGGATGAACTCAACGCACATGTCTTATCATGGATTTTGGAACGAATTGCATGAAGCTGACTCTTTGATTCTAAACGAATTACTCTTGATTCTAAACGAACTACTCTTTGATTCTAAATTAATTACTCTTGATTCTAAACGAACTACTCTTTGATTCTAAATTAATTACTCTTGATTCTAAACGAACTACTCTTTGATTCTAAATTAATTACTCTTGATTCTAAACGAACTACTCTTTGATTCTAAATGAATTACTCTTTGATTCTAAACGAATTACTCTTTGATTCTAAATGAATTACTCTTGATTCTAAATGAATTACTCTTGATTCTAAATGAATTACTCTTTGATTCTAAACGAATTACTCTTGATTCTAAACGAATTACTCTTGATTCTAAACGAATTACTCTTGATTCTAAACAAACTACTCTTGATTCTAAACGAATTACTCTTGATTCTAAACAAACTACTCTTGATTCTAAATGAATTACTCTTGATTCTAAATGAATTACTCTTGATTCTAAATGAATTACTCTTGATTCTAAATGAATTACTCTTTGATTCTAAATTAATTACTCTTTGATTCTAAATGAATTACTCTTGATTCTAAACAAATTACCTCTTGATTCTAAATGAATTACTCTTGATTCTAAATGAATTACTCTTGATTCTAAATGAATTACTCTTGATTCTAAATGAATTACTCTTGATTCAAAATGAATTACTCTTGATTCTAAATGAATTACTCTTGATTCTAAATGAATTACTCTTGATTCTAAACAAATTACCTCTTGATTCTAAAATAATTACTCTTGATTCTAAACAAATTACCTCTTGATTCTAAAATAATTACTCTTGATTCTAAACGAACTATTCTTGATTCTAAAATAATTACTCTTGATTCTAAACAAATTACTCTTGATTCTAAAATAATTACTCTTGATTCTAAACAAACTACTCTTGATTCTAAATGAATTACTCTTGATTCTAAATGAATTACTCTTGATTCTAAACAAATTACTCTTGATTCTAAAATAATTACTCTTGATTCTAAACAAACTATTCTTGATTCTAAAATAATTACTCTTGATTCTAAACAAACTACTATTGATTCTAAACAAACTACTCTTGATTCTAAATAAACTACTCTTGATTCTAACCGAATTACTCTTGATTCTAAACGAACTACTCTTTGATTCTAAACAAACTACTCTTGATCCTAAACGAATTTCTCTTGATTCTAAAGTTGTTGTTGCTCCACACATTCCATAGTGTGTTATTAGTGTAATATTATGAATATGTTGTGTTTATAATGTAGAAGAAATAtatacttttatatatatatttttatttattttttgggctAAAGGTATTGACAGATTTGCAGTGAAGAATACACTCTGTGGGGTGCTTCTCTGAAACTGAGCGTTGCCTTCTAGTGGAGTGTGTTCAGGGAAGCCAAACTTCAAATCgagttgtatttgtcacattgcgccgaatacaactgtgAAAGTGTCAAATCCCAATTGAGAGCATACGTCATTTCCAGAAAAAATGttaaattgttgcatctcgttgtgttgttgtcctctggtggctagctagccagctagctaaaattgtccctttcctaaattagccatggatggagataaggatttagacttgtggttttacttagtTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU342659 lncRNA downstream 3182 79968918 ~ 79969447 (-) True G302089
TU342658 lncRNA downstream 6030 79966074 ~ 79966599 (-) True G302088
TU342487 lncRNA downstream 12231 79960129 ~ 79960398 (-) True G301942
TU342422 lncRNA downstream 75292 79897002 ~ 79897337 (-) True G301883
TU342412 lncRNA downstream 84283 79883490 ~ 79888346 (-) True G301873
TU342668 lncRNA upstream 14434 80002061 ~ 80002285 (-) True G302097
TU342653 lncRNA upstream 15941 80003568 ~ 80004718 (-) True G302085
TU342676 lncRNA upstream 31703 80019330 ~ 80019956 (-) True G302101
TU342717 lncRNA upstream 111134 80098761 ~ 80184066 (-) True G302138
TU342736 lncRNA upstream 146340 80133967 ~ 80134321 (-) True G302153
XM_036975290.1 mRNA downstream 1731445 78235039 ~ 78241184 (-) False LOC110520639
XM_036975292.1 mRNA downstream 1731445 78235039 ~ 78241184 (-) False LOC110520639
XR_005051386.1 mRNA downstream 1731445 78235039 ~ 78241184 (-) False LOC110520639
XR_005051387.1 mRNA downstream 1731445 78235039 ~ 78241184 (-) False LOC110520639
XR_005051388.1 mRNA downstream 1731445 78235039 ~ 78241184 (-) True LOC110520639
XM_036975302.1 mRNA upstream 20258 80007885 ~ 80248467 (-) True LOC110504879
XR_005051392.1 mRNA upstream 320792 80308419 ~ 80335869 (-) False LOC110520643
XM_036975303.1 mRNA upstream 320794 80308421 ~ 80335869 (-) True LOC110520643
XM_036975322.1 mRNA upstream 429322 80416949 ~ 80421159 (-) False LOC110520645
XM_021598066.2 mRNA upstream 429322 80416949 ~ 80421217 (-) False LOC110520645
TU342471 other downstream 28195 79944051 ~ 79944434 (-) True G301928
TU341971 other downstream 521659 79450708 ~ 79450970 (-) True G301453
TU341970 other downstream 522157 79450088 ~ 79450472 (-) True G301452
TU341784 other downstream 681691 79103349 ~ 79290938 (-) True G301283
TU341779 other downstream 749319 79222098 ~ 79223310 (-) True G301282
TU342692 other upstream 61994 80049621 ~ 80051285 (-) True G302117
TU343001 other upstream 431723 80419350 ~ 80421145 (-) True LOC110520645
TU343054 other upstream 520308 80507935 ~ 80508297 (-) True G302399
TU343413 other upstream 693359 80680986 ~ 80683186 (-) True G302660
TU343484 other upstream 733090 80720717 ~ 80721681 (-) True G302724

Expression Profile