Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00029049 |
| length | 2485 |
| RNA type | mRNA |
| GC content | 0.47 |
| exon number | 6 |
| gene id | XLOC_014701 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007130.7 |
| NCBI id | CM002903.2 |
| chromosome length | 48449771 |
| location | 19275813 ~ 19339337 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0048731 | system development | biological_process |
| GO:0050877 | nervous system process | biological_process |
| GO:1902600 | proton transmembrane transport | biological_process |
| GO:0048488 | synaptic vesicle endocytosis | biological_process |
| GO:0043010 | camera-type eye development | biological_process |
| GO:0048513 | animal organ development | biological_process |
| GO:0007275 | multicellular organism development | biological_process |
| GO:0050953 | sensory perception of light stimulus | biological_process |
| GO:0002088 | lens development in camera-type eye | biological_process |
| GO:0048856 | anatomical structure development | biological_process |
| GO:0007600 | sensory perception | biological_process |
| GO:0007601 | visual perception | biological_process |
| GO:0099504 | synaptic vesicle cycle | biological_process |
| GO:0048880 | sensory system development | biological_process |
| GO:0036465 | synaptic vesicle recycling | biological_process |
| GO:0003008 | system process | biological_process |
| GO:0099003 | vesicle-mediated transport in synapse | biological_process |
| GO:0032501 | multicellular organismal process | biological_process |
| GO:0032502 | developmental process | biological_process |
| GO:0001654 | eye development | biological_process |
| GO:0140238 | presynaptic endocytosis | biological_process |
| GO:0006836 | neurotransmitter transport | biological_process |
| GO:0007423 | sensory organ development | biological_process |
| GO:0150063 | visual system development | biological_process |
| GO:0030133 | transport vesicle | cellular_component |
| GO:0043005 | neuron projection | cellular_component |
| GO:0030426 | growth cone | cellular_component |
| GO:0030427 | site of polarized growth | cellular_component |
| GO:0043025 | neuronal cell body | cellular_component |
| GO:0044456 | obsolete synapse part | cellular_component |
| GO:0045202 | synapse | cellular_component |
| GO:0099503 | secretory vesicle | cellular_component |
| GO:0033267 | obsolete axon part | cellular_component |
| GO:0097458 | obsolete neuron part | cellular_component |
| GO:0070382 | exocytic vesicle | cellular_component |
| GO:0044297 | cell body | cellular_component |
| GO:0008021 | synaptic vesicle | cellular_component |
| GO:0036477 | somatodendritic compartment | cellular_component |
| GO:0150034 | distal axon | cellular_component |
| GO:0098793 | presynapse | cellular_component |
| GO:0022804 | active transmembrane transporter activity | molecular_function |
| GO:0005198 | structural molecule activity | molecular_function |
| GO:0005212 | structural constituent of eye lens | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-060503-368 | Predicted to be involved in cell projection morphogenesis and trans-synaptic signaling, modulating synaptic transmission. Predicted to act upstream of or within nervous system development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in synapse. Is expressed in granule cell. Orthologous to human CSPG5 (chondroitin sulfate proteoglycan 5). |
| ensembl_id | ENSDART00000170479 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00029048 | lncRNA | downstream | 254722 | 19016195 ~ 19023360 (-) | True | XLOC_014700 |
| TCONS_00029044 | lncRNA | downstream | 324876 | 18942726 ~ 18953206 (-) | True | XLOC_014699 |
| TCONS_00029043 | lncRNA | downstream | 397958 | 18879002 ~ 18880124 (-) | True | XLOC_014698 |
| TCONS_00030201 | lncRNA | downstream | 414878 | 18860056 ~ 18863204 (-) | False | XLOC_014697 |
| TCONS_00030200 | lncRNA | downstream | 415962 | 18860056 ~ 18862120 (-) | False | XLOC_014697 |
| TCONS_00030203 | lncRNA | upstream | 119714 | 19459051 ~ 19461297 (-) | True | XLOC_014704 |
| TCONS_00030204 | lncRNA | upstream | 171220 | 19510557 ~ 19512337 (-) | True | XLOC_014706 |
| TCONS_00029065 | lncRNA | upstream | 380466 | 19719803 ~ 19721485 (-) | False | XLOC_014710 |
| TCONS_00029068 | lncRNA | upstream | 395339 | 19734676 ~ 19737491 (-) | False | XLOC_014710 |
| TCONS_00030205 | lncRNA | upstream | 395339 | 19734676 ~ 19745732 (-) | False | XLOC_014710 |
| TCONS_00029045 | mRNA | downstream | 252054 | 18989911 ~ 19026028 (-) | False | XLOC_014700 |
| TCONS_00029046 | mRNA | downstream | 252054 | 18991442 ~ 19026028 (-) | False | XLOC_014700 |
| TCONS_00029047 | mRNA | downstream | 252084 | 18991471 ~ 19025998 (-) | False | XLOC_014700 |
| TCONS_00029040 | mRNA | downstream | 422365 | 18847424 ~ 18855717 (-) | False | XLOC_014696 |
| TCONS_00029039 | mRNA | downstream | 422569 | 18846923 ~ 18855513 (-) | False | XLOC_014696 |
| TCONS_00029052 | mRNA | upstream | 2840 | 19342177 ~ 19379084 (-) | True | XLOC_014702 |
| TCONS_00029053 | mRNA | upstream | 98311 | 19437648 ~ 19446529 (-) | False | XLOC_014703 |
| TCONS_00029054 | mRNA | upstream | 100562 | 19439899 ~ 19442983 (-) | True | XLOC_014703 |
| TCONS_00029055 | mRNA | upstream | 157142 | 19496479 ~ 19505167 (-) | True | XLOC_014705 |
| TCONS_00029056 | mRNA | upstream | 209725 | 19549062 ~ 19599372 (-) | False | XLOC_014707 |
| TCONS_00029042 | other | downstream | 416202 | 18861739 ~ 18861880 (-) | True | XLOC_014697 |
| TCONS_00029041 | other | downstream | 422606 | 18854057 ~ 18855476 (-) | True | XLOC_014696 |
| TCONS_00029038 | other | downstream | 436539 | 18841413 ~ 18841543 (-) | True | XLOC_014695 |
| TCONS_00029037 | other | downstream | 439541 | 18838411 ~ 18838541 (-) | True | XLOC_014694 |
| TCONS_00029036 | other | downstream | 443225 | 18834727 ~ 18834857 (-) | True | XLOC_014693 |
| TCONS_00029060 | other | upstream | 370590 | 19709927 ~ 19710042 (-) | True | XLOC_014709 |
| TCONS_00029066 | other | upstream | 389353 | 19728690 ~ 19728755 (-) | True | XLOC_014711 |
| TCONS_00029070 | other | upstream | 482825 | 19822162 ~ 19861512 (-) | True | XLOC_014710 |
| TCONS_00029077 | other | upstream | 804513 | 20143850 ~ 20148449 (-) | False | XLOC_014717 |
| TCONS_00029085 | other | upstream | 912335 | 20251672 ~ 20270141 (-) | False | XLOC_014721 |
