RNA id: XM_036975302.1


Basic Information

Item Value
RNA id XM_036975302.1
length 8385
RNA type mRNA
GC content 0.51
exon number 26
gene id LOC110504879
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 80007885 ~ 80248467 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCGGATCCGGGCAAGCGGGCATAGGTTCCGGAAGGCATGCGTCCAAAACTGAGAGGATCCTGTTCCGGCAGCATAAATCTGAATTATAGGACTTGTCGTATTGCTAAACAAGCAACAACCTTAGTGGTTTCCCCATCCACATTTACTCAGAGTCAAGTTTGGTTTCCCCATGTGTGGAAGCCTGATGAATATGAATAGGCTATTCACACAAACCCACGTTTTTAAGATAGGGCGGTTCCATAAACCAGCAGGCGAAGTTTATTATTTCCCCGTTGCTTTTATTCAACATACCATTCGGTACGTATTGGCTGAGAACCGTAATCCAATCGCTTGCGAGCAAGGGCGGGGAGATGAAGGAAACCAAGAGGCGGGGCCAGAGTAAAGTTTTCCAGTACCACGGACAGGGCTAGACTGCAGGGAATcaaggctgggaggagaggggctgTCAACAACCGCGACAAATCGTCTTGACGACTTCATTTCACCTGATTCCACTCTCGTTTACCTGTTCCTCTTCTTGGTTCGCACGATGGTTGACTTTATTTTCGCGTTTTGATGCCAAGAGAGTGGAAGCGAGCTGCATTGTCTCTCTGCGTAGATCTGCCTCACTCTCCATTCTGCCAAAAACAGTGCGATTTTTGTTTGAAGCATTGTTTAGGTAGTATATTGGTAACTGTTTGATCATTTAGCTGGTTATCTGTATAGTTAGTCGCTCATAATTGTTGCAGTTAATTGATTTACATTTTTCAGTTTGTCTTATGCCGTTATGCTTTATTGTAATGCGGTTTTAGCAGGCTAAAGAAACATGAAGTTTCTTAGGTGAAATCCTTACTGTGGCATACTCTGGTGCGCAATAGACCTCCATTAGCAATTGGCTAGTCTCTTTTACCAATAAGCATCCCCATCAAACCAAGATAAACAATTTTGTGGACGGAAGCCTAAGTGCACGATGAGGTCCCTCCAGGACTTTTTGAATTGCACTTAAAaaggagagcgaaggagagagagagagagagagagaggctacaggAAGCGACGCCTGCCAACCCTCAAAAACACCAAACATACTCGCCTCATCTTAGCCTTTGAAAAGAATTACAACTCTTGATCAGGTTGCTAGAATATTTTGATATAGACGTTCTTATTTCTCAGTAAACTAAAGGAAGATGAAGAAGTTTCGGAAGGTACTGGATGGcctgtcttcctcctctcagGGGGCTGTCGCGTCCCCGTCATGCAGCAGAGCAGCCGGTACCCCGCCCACTCCACAGGATATCCATGTCCAGGAGACGCTACTCTCGGAAAACTTTCACATATGCAagACGGTACGCCATGGCTTCCCCTACCAGCCCACCTGCCTGGCATTCGACCCCGTCCAGAAGATCCTAGCCATCGGCTCCAGAACAGGAGGCATACGGATACTGGGCCGGCCTGGTGTGGACTGCTACAGCCAGCATGAGAGTGGAGCCGCTGTTCTCCAGCTACAGTTCCTCATCAATGAGGGAGCTCTGGTCACAGCATGTGCAGATGACACACTGCACCTGTGGAACCTTCGCCAGAGACGCCCAGCCATCCTGCACTCGCTCAAATTCAACAGGGAGAGGATCACGTTTTGCCACATCCCCTTCCAGAGTAAATGGCTGTACGTGGGCACAGAGCGTGGCAACACGCACATCGTCAACATCGAGTCCTTCGTTCTGTCTGGATACGTCATCATGTGGAACAAGGCCATAGAGTTAGCAACTAAAGCCCATCCAGGACCCGTAGTCCATCTGAGTGACAGCCCGAAGGATGAATGCAAGTTGCTGATAGGGTTTGAAAGTGGAACAGTAGTACAGTGGGACCTCCGGGCCAAGAAGGTTGACTTCAGAATCTACTATGATGAAGCTATCCATTCTGTGAGCTGGCACCATGAAGGGAACCAGTTCATGTGTAGCCACTCAGACGGCAGCTTGACTATGTGGAACCTGAGGAACACAGCCAGGCCTATTCAGATCACATATCCTCAtgGGAAGAtactgaaggaagggaggaaggagtcGTGTAAGCCCATCCTCAAGGTGGAATACAAGACCTCCAGAAACAGCAACGAGCCCTATGTCATCTTCTCTGGGGGTCTGTCATACGACAAGGCTGGGGGACGGAGGCCCACCCTGACCATCATGCATGGCAAGGCCATCACGGTGCTGGAGATGGACCACCCTATCGTAGAGTTCCTGGTGCTCTGTGACACCCCATACTGCAACAAGATCCAGGATCCGTATGCGGTGGTGCTGCTTCTAGAAAAGGACTTTATCATGGTTGATCTGACACAGAGCAaTTTCCCCATCTTTGAGACCCCATACCCCATGGACATCCACGAGTCTCCTGTCACCTGTACAGCCTACTTCGCCGAGTGCCCCCCGGATATCATCCCAGTCCTCTACTCCGTAGGAGCCAAGCAGAAGAAGACCGGCTACAGCCACAAGGAGTGGCCAGTGAGTGGCGGTACGTGGACATTAGGCTCACAGACCTACCCAGAGGTTATCGTCACAGGACACGCAGATGGAACCGTAAAGTTTTGGGACGCATCTGCTATTACACTGCAGATGCTGTACAAGCTGAAGACGTCTAAGGTGTTTGAGAACCCCAATGCGGGTGAAGGCCGGGCGGTCGAGCAGGTAGAGGAGGACCCTTACGCCATTCAGATGGTCCGCTGGTGCCCGCAGAGCCGTCTCTTCTGTGTGGTGGGCATCTCTGCCCACGTCATCCTCTACCGCTTCAGCAAACACGACGCCAACGCAGAGATAGTGTCTCTAGAAGTGCGTCTGCAGTTTGATTCAGAGGACATCATCTCCCTGTCAGAGACAGACCAGTGTTTCTCAGACCCCAGTTCCCACTCCCCCCAGATGCCCGGTAGCCCCAGCAACGGATCACAAGACAGCCTCCACTACCGCAAGGTGAAGAGTCGTCCAGTGCGCATGCCCCCGGGGTACCAGGCTGAGTTGGTGATGCAGCTGCAATGGGTGGATAGAGAGCCCCCCCAGCAGATCACCAGCCTGGATATCAACTCTGCCTATGGCCTtCTAGCGTTTGGGAGCTGCaatggtctagtggtggtggactACATTCAGAAGACCATCCTGATGTGTGTGAGCACGTTGGACCTGTACGGAGCTGCTGACCCCTACCAACGCCTCACACGCTCCCCACGCAAAAACAGACAGTCCACCTCAGGCCTAACGGAACTGTCCGACAACCAGGTGTCCATGGACATGGAGAGAAGCAAGTCACCCACCTCAGATCATGTCAATGGACATTGCACTAGCCCCACCTCTCAGCCATGCTCCTTGGGGAAGTCTCGCCTTCCAGGGGCTCCTGAGGGCCCGCGGCTCCCCCGGAGAGGCCCCGGCCGACCACCCTTCCGCAAGGCCCAGTCTGCCGCTTGCATGGAGATCTCTTTGCCAGTTTCCTCCCTCACGGAAGAAAGCAGGGAGAATTCGTTCAGCTTCTCGCGGAGCTCCAGTGTGTCAAGTATCGGCCGCGACACCAAGGAAGCGGTGACCACGCTGCAGTTCGGAGAGTCCTACGGTCGTAAAGGTGACTCCGTGCCCACCGCCTGCCTGTGGGTGGGCACCAGCCTGGGCGTGGTCCTCCTACTGCCCATATCCATccccacagagaaggagaggctgGAGGAGCCTGTCACCATGGGGCCCAGCGgtaCCGTCCTGATGCTGAAGGGCTCAGTGCTAAGCTTTTCCTTCCTGGACTGTGGgggcactcttatccagagtcccTACGAGGTTTGGCGGGAACCCAACGTCCCCGAGGACCCCGACGAGCCCCGCAGGCGCAAGCTGGTCAACTTATCCCCGCTGTCTTCCCAGGAGGCATGTGGGGACGGTCACCTGGCCGTGGTGTGTTCTGAGAAACAGGCCAAGGTCATCCTCATGCCTACCCAGGCCGTCCTGTTCACACACAACGTCACAGAGTCGTCCTTCCTCCTGCGTGCCGACGTCGTCTCCGTCTGCAACAGCGTCTGCCTGGCCTGCTTCTGCGCCAATGGACACGTCATGACCCTCAGTTTGCCCAGTCTTAGACTCCTGATGGATACTAACTACTTTCCCCTGACGGACATGCGTATCGCCCGTACCTTCGTCTTCACCAACGGCGGTcaggctctgtacctgagctctccTACAGAGATACAACGCATCGCATACAGCCAAGAGATGACGGACAACCTGCAGGACATGCTGGGGGAGCTGTTCACTCCAATAGAAACACCAGAGGCCCAGAACCAAGGATTCCTCAAGGGATTCTTCGGGGGCAACGCCCAGACCTTCGACAGAGAAGAGCTGTTTGGGGAGGCAGCAGCGGGAAAGGCCTCTCGGAGCCTGGCCCAGCACATCCCTGGTCCAATGGGATTGGAGAACGTGAGGGCTGCAGCCGGCGGGGTGGTGGGGGACCTGGCCCGAGCCCGCATCGCcttggagcagagaggagagagactgggagagctgGAGGAACGCACCACCCTCATGATGAAAAGTGCAGAGACGTTCTCAACACACGCCCACCAGGTAATGCTGAAACATAAGGACAAGAAATGGTATCAACTTTAAAGTAGGACAGCAGGCCACGACTGCTGGTGCTTTGTTGGGACATGGACCATCACTctacagctgagagagagacagagagagggagagagagaaagagagagagacagcgagagagagaaattactTTGTATTTATGGGCCTCTCTGTAGGACGTCTGTACATCATTGTCACAAGACTTGGACAGAGGGCAGAGGTCACTGAGATGGACACAGACCAGGAAGTAAGTtggtaagacaggggaacccaggAAGTGGATGATGACAgttcatcagtgtgtgtgtgtgtgggtgggttacCCAGATCTTGCTGTGTAGATACTCTTAACGTTATGAAACCAACAAGACTGAATTAAACAAAATGGATGACTACTGATAACAAACAACTGCCATATCATAAGGCAGCATGCTACTGTAagaaataataaatataaaatgtattgaaCAATATAATATAAACAAAAGAAAGTGTGAtttcaaaaataataatactttttgaaatattaaaaatatatatatatataaacatgaaAATGTATACCTGTATTGCTATAAAGCCAAAAGTTTTTTATGTTGtcttctttatatatatatatattattctttATCTCTTTAGGTTTTCTGAACACATATCGTTGCTGTATCAACACTTTATTTCCCCAATATTGTACTCGTGATGATATTTGTGTGCCGTCAGATCTCCTGGGTCTAAACAGTGAGAGAAACAAGACACGAGTCTTTCAAAACGTATCACTACACACATTGAGAGACGTATCACTACACACATTGAGAGACGTATCACTACACACATTGAGAGACGTATCACTACACACATTGAGAGACGTATCACTACACACATTGAGAGACGTATCACTACACACATTGAGAGACGTATCACTACACACATTGAGAGACGTATCACTACACACATTGAGAGACGTATCACTACACACATTAGGAGACGTATCACTACACACATTGAGAGACGTATCACTACACACATTGAGAGACGTATCACTACACACATTGAGAGACGTATCACTACACACATTGAGAGACGTATCACTACACACATTGAGAGACGTATCACTACACACATTGAGAGACGTATCACTACACACATTGAGAGACGTATCACTACACACATTGAGAGACGTATCACTACACACATTAGGAGACGTATCACTACACACATTGAGAGACGTATCACTACACACATTGAGAGACGTATCACTACACACATTGAGAGACGTATCACTACACACATTCTGAACCACTACATTTCACCAACATTCATTTCATTCTGTTTGGATGTTGCTACTGACTTGACCTGTtagctaaatatatatatatacatttcagCCACATGATGGGAATAGATGTGTAATGTGTGAATGGTAATAAGTTGTGTTGGCTGTGCTGACAGTGGTGACAGTGGTGTGTGTTGGCTGAGGGGCCGTGGTGATAGTGGTGTGTGTTGGCTGAGGGGCCGTGGTGATAGTAGCCTGTGTTGGCTGAGGGGTCGTGGTGATAGTGGTCTATATTGGCTGGGGGACCGTGGTGATAGTGGTTTGTGTTGGCTGAGGGGCCCGTGGTGATAGTGGTCTTTGTTGGCTGAGGGGCTGTGGTGATAGTGGTGTGTGTTGGATGAGGGGTCGTGGTGATAGTGGTCTTTGTTGGCTGAGGGGCCGTGGTGATAGTGGTGTGTGTTGGCTGAGGGACCGTGGTGATAGTAGCCTGTGTTGGCTGAGAGGTCGTGGTGATAGTGGTTTGTGTTGGCTGAGGGGCCCGTGGTTATAGTGGTGTGTGTTGGCTGAGGGGCCGTGGTGATAGTGGTTTGTGTTGGCCTGAGGGTCCCGTGGTGATAGTGGTGTGTGTTGGCTGAGGGGCCGTGGTGATAGTGGTCTATATTGGCTGAGGGACCGTGGTGATAGTGGTTTGTGTTGGCTGAGGGGCCCGTGGTGATAGTGGTCTTTGTTGGCTGTGGTGATAGTGGTGTGTGTTGGCTGAGTGGCCTGTGGTGATAGTGGTCTTTGTTGGCTGTGGTGATAGTGGTGTGTGTTGGCTGAGGGGTTGTGGTGATAGTGACCTTTGTTGGCTGAGGGGCCATGGTGATAGTGGTGTGTGTTGGTTGAGGGACCGTGGTGATAGTGGTCTATATTGGCTGAGGGACCGTGGTGATAGTGGTTTGTGTTGGCTGAGGGGCCCGTGGTGATAGTGGTGTGTGTTGGCTGAGGGGccgtggtggtagtggtgtgtgatGGCTGAGGGGCCGTGGTGATAGTGGTGTGTGTTGGCTGAGGGCCCGTGGTGATAGTGGTGTGTGTTGGCTGAGGGGCCCGTGGTGATAGTGGTGTGTGTTGGCTGAGGGCCCGTGGTGATAGTGGTGTGTGTTGGCTGAGGGGCCCGTGGTGATAGTGGTGTGTGTTGGCTGAGGGGccgtggtggtagtggtgtgtgatGGCTGAGGGGCCCGTGGTGATAGTGGTGTGTGTTGGCTGAGGGGCCCGTGGTGATAGTGGTGTGTGTTGGCTGAGGGCCCGTGGTGATAGTGGTGTGTGTTGGCTGAGGGGCCCGTGGTGATAGTGGTGTGTGTTGGCTGAGGGGCCCGTGGTGATAGTGGTGTGTGTTGGCTGAGGGCCCGTGGTGATAGTGGTGTGTGTTGGCTGAGGGGCCCGTGGTGATAGTGGTGTGTGTTGGCTGAGGGACCGTGGTGATAGTGGTGTGTGTTGCCTGAGGGCCCGTGGTGATAGTGGTGTGTGTTGGCTGAGGGGCCCGTGGTGATAGTGGTGTGTGTTGGCTGAGGGCCCGTGGTGATAGTGGTGTGTGTTGGCTGAGGGCCCGTGGTGATAGTGGTGTGTGTTGGCTGAGGGCCCGTGGTGATAGTGGTGTGTGTTGGCTGAGGGCCCGTGGTGATAGTGGTGTGTGTTGGCTGAGGGGCCCGTGGTGATAGTGGTGTGTGTTGGCTGAGGGGCCCGTGGTGATAGTAGCCTGTTATTAAGTGTGTTTAtatttataataaaaaaatattattcacGTGCCATATAATCAATACTGGCTAAGCCCTTTACTTTAAACTAGCAAATAGTTAGTCTATGTGGTAATAatgatgtttgctgtagatgagATTGGGTGAGACCAGCTTTTCGGTCTGGTCATTGATAGGTCGTCTTTCGTTGTCCACTGAGTTTCCGGTTCTTTTGACAGAATTCTGatattcttcttttttttttctccctgtaTTGTTCTGTTGGTGTTTTGTGTGGTTCTTCACTGGAAATCTTCTGCCTGACTCTGTCATATCGTGTATGAGTTTGTTGAGTCATTGAGTGACTCACACACGCCCAtgtaaagacaaaaaaaaaacgtacTCTTTCTTCTGCCTGAAAGCAACTCAACTTGAATGAAGCCCACGGACGGAGGAGTGTATCATGAACATGTTATTGTGGATGGCTGGGGAGTCCCTCAGGACTGGTACTCTTTTTTTAATAAGAGTAAGCCTAGATAGAAGACTTTGAGTTACAGTCTGGTCCATTTAAACACTACCACCAATCCAGAACAGAGGTATCCTTCGTTTCGGTGCGTTTGTCTGCTGGATCCAGTCTAGTAGTAGCCTACCGTCGTCAGCCTTGCTGTGTCAGTCGTCACTGGCACCTATAGTAAACAGGCCTTCTATGTCACATATAAGGAATTCAGACTGGTATGAATTTGAagcaaatatatttatattattttgtTCTACTTGTATTTTGTCTTGATGACCTTAAATGTATCCCATCTTA

Function

GO: NA

KEGG:

id description
K08518 STXBP5, SRO7_77; syntaxin-binding protein 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU342653 lncRNA downstream 3167 80003568 ~ 80004718 (-) True G302085
TU342668 lncRNA downstream 5600 80002061 ~ 80002285 (-) True G302097
TU342657 lncRNA downstream 23846 79973789 ~ 79984039 (-) True LOC110505446
TU342656 lncRNA downstream 34956 79971886 ~ 79972929 (-) False LOC110505446
TU342659 lncRNA downstream 38438 79968918 ~ 79969447 (-) True G302089
TU342825 lncRNA upstream 42040 80290507 ~ 80290741 (-) True G302231
TU342833 lncRNA upstream 46519 80294986 ~ 80295215 (-) True G302238
TU342838 lncRNA upstream 47114 80295581 ~ 80296022 (-) True G302241
TU342843 lncRNA upstream 47686 80296153 ~ 80298185 (-) True G302242
TU342844 lncRNA upstream 50331 80298798 ~ 80299002 (-) True G302243
XM_036975312.1 mRNA downstream 20258 79972629 ~ 79987627 (-) False LOC110505446
XM_036975290.1 mRNA downstream 1766701 78235039 ~ 78241184 (-) False LOC110520639
XR_005051392.1 mRNA upstream 59952 80308419 ~ 80335869 (-) False LOC110520643
XM_036975303.1 mRNA upstream 59954 80308421 ~ 80335869 (-) True LOC110520643
XM_036975322.1 mRNA upstream 168482 80416949 ~ 80421159 (-) False LOC110520645
XM_021598066.2 mRNA upstream 168482 80416949 ~ 80421217 (-) False LOC110520645
XR_005051394.1 mRNA upstream 168482 80416949 ~ 80421217 (-) False LOC110520645
TU342471 other downstream 63451 79944051 ~ 79944434 (-) True G301928
TU341971 other downstream 556915 79450708 ~ 79450970 (-) True G301453
TU341970 other downstream 557413 79450088 ~ 79450472 (-) True G301452
TU341784 other downstream 716947 79103349 ~ 79290938 (-) True G301283
TU343001 other upstream 170883 80419350 ~ 80421145 (-) True LOC110520645
TU343054 other upstream 259468 80507935 ~ 80508297 (-) True G302399
TU343413 other upstream 432519 80680986 ~ 80683186 (-) True G302660
TU343484 other upstream 472250 80720717 ~ 80721681 (-) True G302724
TU343486 other upstream 473271 80721738 ~ 80722623 (-) True G302725

Expression Profile